RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 COX17Q14061 63 aa7.16□□□□□ -1.26
CLIP1-210ENST00000538120 Q8NDZ9 215 aa7.16□□□□□ -1.26
CLIP1-210ENST00000538120 LINC01556Q5JQF7 62 aa7.16□□□□□ -1.26
CLIP1-210ENST00000538120 DNAH9Q9NYC9 4486 aa7.16□□□□□ -1.26
CLIP1-210ENST00000538120 CCKP06307 115 aa7.15□□□□□ -1.26
CLIP1-210ENST00000538120 Q8N814 137 aa7.15□□□□□ -1.27
CLIP1-210ENST00000538120 A0A0U1RQV1 116 aa7.14□□□□□ -1.27
CLIP1-210ENST00000538120 EPM2AB3EWF7 344 aa7.14□□□□□ -1.27
CLIP1-210ENST00000538120 UPK3BQ9BT76 320 aa7.13□□□□□ -1.27
CLIP1-210ENST00000538120 DNAH1Q9P2D7 4330 aa7.13□□□□□ -1.27
CLIP1-210ENST00000538120 MGAM2Q2M2H8 2515 aa7.13□□□□□ -1.27
CLIP1-210ENST00000538120 SERP2Q8N6R1 65 aa7.13□□□□□ -1.27
CLIP1-210ENST00000538120 LINC00167Q96N53 147 aa7.13□□□□□ -1.27
CLIP1-210ENST00000538120 DNAH10OSP0CZ25 163 aa7.12□□□□□ -1.27
CLIP1-210ENST00000538120 Q6ZRU5 148 aa7.12□□□□□ -1.27
CLIP1-210ENST00000538120 LINC00588Q9Y4M8 146 aa7.12□□□□□ -1.27
CLIP1-210ENST00000538120 GVQW2A0A096LPI5 108 aaPredicted RBP7.12□□□□□ -1.27
CLIP1-210ENST00000538120 C6orf99Q4VX62 202 aa7.11□□□□□ -1.27
CLIP1-210ENST00000538120 C15orf56Q8N910 161 aa7.11□□□□□ -1.27
CLIP1-210ENST00000538120 C6orf48Q9UBA6 75 aa7.11□□□□□ -1.27
CLIP1-210ENST00000538120 TRAV23DV6A0A075B6W5 121 aa7.1□□□□□ -1.27
CLIP1-210ENST00000538120 HIGD2BQ4VC39 106 aa7.1□□□□□ -1.27
CLIP1-210ENST00000538120 LAMTOR3Q9UHA4 124 aa7.1□□□□□ -1.27
CLIP1-210ENST00000538120 JMJD7-PLA2G4BH0Y9G9 81 aa7.09□□□□□ -1.27
CLIP1-210ENST00000538120 TMEM256-PLSCR3K7ERE1 68 aa7.09□□□□□ -1.27
CLIP1-210ENST00000538120 M0R2N4 97 aa7.09□□□□□ -1.27
CLIP1-210ENST00000538120 Q75L30 129 aa7.09□□□□□ -1.27
CLIP1-210ENST00000538120 DSCR8Q96T75 97 aa7.09□□□□□ -1.27
CLIP1-210ENST00000538120 MUC7Q8TAX7 377 aa7.08□□□□□ -1.28
CLIP1-210ENST00000538120 BRK1Q8WUW1 75 aa7.08□□□□□ -1.28
CLIP1-210ENST00000538120 DYNC2H1Q8NCM8 4307 aaKnown RBP7.08□□□□□ -1.28
CLIP1-210ENST00000538120 IGKV2D-24A0A075B6R9 120 aa7.08□□□□□ -1.28
CLIP1-210ENST00000538120 NDUFC2-KCTD14E9PQ53 114 aa7.07□□□□□ -1.28
CLIP1-210ENST00000538120 KRTAP19-1Q8IUB9 90 aa7.07□□□□□ -1.28
CLIP1-210ENST00000538120 PRR15Q8IV56 129 aa7.07□□□□□ -1.28
CLIP1-210ENST00000538120 CAMK2N2Q96S95 79 aa7.07□□□□□ -1.28
CLIP1-210ENST00000538120 S100A7L2Q5SY68 101 aa7.06□□□□□ -1.28
CLIP1-210ENST00000538120 LINC00575Q6W349 94 aa7.06□□□□□ -1.28
CLIP1-210ENST00000538120 KRTAP9-2Q9BYQ4 174 aa7.06□□□□□ -1.28
CLIP1-210ENST00000538120 KRTAP4-12Q9BQ66 201 aa7.06□□□□□ -1.28
CLIP1-210ENST00000538120 COL7A1Q02388 2944 aa7.05□□□□□ -1.28
CLIP1-210ENST00000538120 B9D2Q9BPU9 175 aa7.05□□□□□ -1.28
CLIP1-210ENST00000538120 Q6ZQT0 140 aa7.04□□□□□ -1.28
CLIP1-210ENST00000538120 UBL5Q9BZL1 73 aa7.04□□□□□ -1.28
CLIP1-210ENST00000538120 XAGE1AQ9HD64 81 aa7.04□□□□□ -1.28
CLIP1-210ENST00000538120 SMIM26A0A096LP01 95 aa7.04□□□□□ -1.28
CLIP1-210ENST00000538120 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.04□□□□□ -1.28
CLIP1-210ENST00000538120 CASC10Q5T4H9 136 aa7.04□□□□□ -1.28
CLIP1-210ENST00000538120 SERP1Q9Y6X1 66 aa7.04□□□□□ -1.28
CLIP1-210ENST00000538120 RBM3P98179 157 aaKnown RBP7.03□□□□□ -1.28
CLIP1-210ENST00000538120 C8orf87E5RJ46 101 aa7.03□□□□□ -1.28
CLIP1-210ENST00000538120 ATP5EP2Q5VTU8 51 aa7.03□□□□□ -1.28
CLIP1-210ENST00000538120 IGLV6-57P01721 117 aa7.02□□□□□ -1.29
CLIP1-210ENST00000538120 C20orf197Q8N268 126 aa7.02□□□□□ -1.29
CLIP1-210ENST00000538120 Q6ZQY7 126 aa7.02□□□□□ -1.29
CLIP1-210ENST00000538120 RBM12B-AS1Q9P1G2 102 aa7.01□□□□□ -1.29
CLIP1-210ENST00000538120 SYCNQ0VAF6 134 aa7.01□□□□□ -1.29
CLIP1-210ENST00000538120 APLNQ9ULZ1 77 aa7.01□□□□□ -1.29
CLIP1-210ENST00000538120 STAB2Q8WWQ8 2551 aa7□□□□□ -1.29
CLIP1-210ENST00000538120 KRTAP9-6A0A140TA67 174 aa7□□□□□ -1.29
CLIP1-210ENST00000538120 HAMPP81172 84 aa7□□□□□ -1.29
CLIP1-210ENST00000538120 Q6ZRP5 223 aa7□□□□□ -1.29
CLIP1-210ENST00000538120 LINC01547P58512 204 aaPredicted RBP7□□□□□ -1.29
CLIP1-210ENST00000538120 LYSTQ99698 3801 aa6.99□□□□□ -1.29
CLIP1-210ENST00000538120 TRBV7-6A0A0J9YX20 115 aa6.99□□□□□ -1.29
CLIP1-210ENST00000538120 TRBV10-3A0A0K0K1G6 114 aa6.99□□□□□ -1.29
CLIP1-210ENST00000538120 Q6ZVQ6 151 aa6.99□□□□□ -1.29
CLIP1-210ENST00000538120 KRTAP1-5Q9BYS1 174 aa6.99□□□□□ -1.29
CLIP1-210ENST00000538120 PLECQ15149 4684 aaKnown RBP6.99□□□□□ -1.29
CLIP1-210ENST00000538120 LOC110117498A0A087WWA1 95 aa6.99□□□□□ -1.29
CLIP1-210ENST00000538120 DNHD1Q96M86 4753 aa6.98□□□□□ -1.29
CLIP1-210ENST00000538120 DNAH10Q8IVF4 4471 aa6.97□□□□□ -1.29
CLIP1-210ENST00000538120 SCXQ7RTU7 201 aa6.97□□□□□ -1.29
CLIP1-210ENST00000538120 RMI2Q96E14 147 aa6.97□□□□□ -1.29
CLIP1-210ENST00000538120 CSMD3Q7Z407 3707 aa6.97□□□□□ -1.29
CLIP1-210ENST00000538120 TLX1NBP0CAT3 122 aa6.95□□□□□ -1.3
CLIP1-210ENST00000538120 M0R378 163 aa6.95□□□□□ -1.3
CLIP1-210ENST00000538120 SNURFQ9Y675 71 aa6.95□□□□□ -1.3
CLIP1-210ENST00000538120 PRKDCP78527 4128 aaKnown RBP6.95□□□□□ -1.3
CLIP1-210ENST00000538120 H7BZZ5 65 aa6.94□□□□□ -1.3
CLIP1-210ENST00000538120 DNAH7Q8WXX0 4024 aa6.94□□□□□ -1.3
CLIP1-210ENST00000538120 FP248Q71RG6 208 aaPredicted RBP6.93□□□□□ -1.3
CLIP1-210ENST00000538120 DIRC1Q969H9 104 aa6.93□□□□□ -1.3
CLIP1-210ENST00000538120 TRAV7A0A075B6U4 112 aa6.93□□□□□ -1.3
CLIP1-210ENST00000538120 ZNF73O43830 326 aaPredicted RBP6.93□□□□□ -1.3
CLIP1-210ENST00000538120 TRBV7-4A0A0J9YYF1 115 aa6.92□□□□□ -1.3
CLIP1-210ENST00000538120 UBE2DNLQ8IWF7 75 aa6.92□□□□□ -1.3
CLIP1-210ENST00000538120 STARD9Q9P2P6 4700 aa6.91□□□□□ -1.3
CLIP1-210ENST00000538120 COX7BP24311 80 aa6.91□□□□□ -1.3
CLIP1-210ENST00000538120 ELOF1P60002 83 aaKnown RBP6.9□□□□□ -1.3
CLIP1-210ENST00000538120 KRTAP7-1Q8IUC3 87 aa6.9□□□□□ -1.3
CLIP1-210ENST00000538120 VPS13DQ5THJ4 4388 aa6.9□□□□□ -1.3
CLIP1-210ENST00000538120 CXCL6P80162 114 aa6.9□□□□□ -1.31
CLIP1-210ENST00000538120 KTN1-AS1Q86SY8 53 aa6.9□□□□□ -1.31
CLIP1-210ENST00000538120 Q8N9L7 120 aa6.9□□□□□ -1.31
CLIP1-210ENST00000538120 FAM168BA1KXE4 195 aa6.89□□□□□ -1.31
CLIP1-210ENST00000538120 NUPR2A6NF83 97 aa6.89□□□□□ -1.31
CLIP1-210ENST00000538120 C7orf33Q8WU49 177 aa6.89□□□□□ -1.31
CLIP1-210ENST00000538120 KLKP1Q107X0 134 aa6.89□□□□□ -1.31
CLIP1-210ENST00000538120 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms