RNA–Protein interactions for RNA: ENST00000536990.5

SYNE1-234, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 3,003 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-234ENST00000536990 LINC01556Q5JQF7 62 aa7.57□□□□□ -1.2
SYNE1-234ENST00000536990 C11orf45Q8TAV5 145 aa7.57□□□□□ -1.2
SYNE1-234ENST00000536990 RMI2Q96E14 147 aa7.57□□□□□ -1.2
SYNE1-234ENST00000536990 TM2D3Q9BRN9 247 aa7.57□□□□□ -1.2
SYNE1-234ENST00000536990 SNURFQ9Y675 71 aa7.57□□□□□ -1.2
SYNE1-234ENST00000536990 C4orf26Q17RF5 130 aa7.56□□□□□ -1.2
SYNE1-234ENST00000536990 KRTAP24-1Q3LI83 254 aa7.56□□□□□ -1.2
SYNE1-234ENST00000536990 TENM3Q9P273 2699 aa7.54□□□□□ -1.2
SYNE1-234ENST00000536990 F8WDY8 70 aa7.54□□□□□ -1.2
SYNE1-234ENST00000536990 SYCNQ0VAF6 134 aa7.54□□□□□ -1.2
SYNE1-234ENST00000536990 SERP1Q9Y6X1 66 aa7.54□□□□□ -1.2
SYNE1-234ENST00000536990 KCNQ1DNQ9H478 68 aa7.53□□□□□ -1.2
SYNE1-234ENST00000536990 ANK2Q01484 3957 aa7.53□□□□□ -1.2
SYNE1-234ENST00000536990 F8WEM9 126 aa7.53□□□□□ -1.2
SYNE1-234ENST00000536990 IGKV4-1P06312 121 aa7.52□□□□□ -1.21
SYNE1-234ENST00000536990 Q8N9L7 120 aa7.52□□□□□ -1.21
SYNE1-234ENST00000536990 CMYA5Q8N3K9 4069 aa7.52□□□□□ -1.21
SYNE1-234ENST00000536990 BPY2O14599 106 aa7.52□□□□□ -1.21
SYNE1-234ENST00000536990 NREPQ16612 68 aa7.52□□□□□ -1.21
SYNE1-234ENST00000536990 SERTAD4-AS1Q5TG53 156 aa7.52□□□□□ -1.21
SYNE1-234ENST00000536990 STAB1Q9NY15 2570 aa7.52□□□□□ -1.21
SYNE1-234ENST00000536990 DNAH10OSP0CZ25 163 aa7.51□□□□□ -1.21
SYNE1-234ENST00000536990 HRCT1Q6UXD1 115 aa7.51□□□□□ -1.21
SYNE1-234ENST00000536990 Q8N377 158 aa7.51□□□□□ -1.21
SYNE1-234ENST00000536990 C7orf33Q8WU49 177 aa7.51□□□□□ -1.21
SYNE1-234ENST00000536990 IGLV5-48A0A075B6I7 105 aa7.49□□□□□ -1.21
SYNE1-234ENST00000536990 NDUFC1O43677 76 aa7.49□□□□□ -1.21
SYNE1-234ENST00000536990 NKAPP1Q8N9T2 125 aa7.49□□□□□ -1.21
SYNE1-234ENST00000536990 ERC2-IT1O76042 136 aa7.49□□□□□ -1.21
SYNE1-234ENST00000536990 DEFB105AQ8NG35 78 aa7.49□□□□□ -1.21
SYNE1-234ENST00000536990 C3orf84H3BNL1 204 aa7.48□□□□□ -1.21
SYNE1-234ENST00000536990 TMEM254Q8TBM7 123 aa7.48□□□□□ -1.21
SYNE1-234ENST00000536990 OCR1Q9BZK8 76 aa7.48□□□□□ -1.21
SYNE1-234ENST00000536990 FBN1P35555 2871 aaKnown RBP7.47□□□□□ -1.21
SYNE1-234ENST00000536990 KRTAP4-16G5E9R7 235 aaPredicted RBP7.46□□□□□ -1.21
SYNE1-234ENST00000536990 TLX1NBP0CAT3 122 aa7.46□□□□□ -1.21
SYNE1-234ENST00000536990 PLA2G2DQ9UNK4 145 aa7.46□□□□□ -1.21
SYNE1-234ENST00000536990 FLNBO75369 2602 aaKnown RBP7.46□□□□□ -1.21
SYNE1-234ENST00000536990 LINC00588Q9Y4M8 146 aa7.46□□□□□ -1.22
SYNE1-234ENST00000536990 Q9BRP9 147 aa7.46□□□□□ -1.22
SYNE1-234ENST00000536990 DNAH3Q8TD57 4116 aa7.46□□□□□ -1.22
SYNE1-234ENST00000536990 Q6ZRX8 168 aa7.45□□□□□ -1.22
SYNE1-234ENST00000536990 MRAPQ8TCY5 172 aa7.45□□□□□ -1.22
SYNE1-234ENST00000536990 DHRS4-AS1Q9P1J3 65 aa7.45□□□□□ -1.22
SYNE1-234ENST00000536990 A0A1W2PNM2 257 aa7.44□□□□□ -1.22
SYNE1-234ENST00000536990 NOTCH1P46531 2555 aa7.44□□□□□ -1.22
SYNE1-234ENST00000536990 MAST4O15021 2626 aa7.44□□□□□ -1.22
SYNE1-234ENST00000536990 IGLV5-37A0A075B6J1 123 aa7.44□□□□□ -1.22
SYNE1-234ENST00000536990 RPL37AP8A6NKH3 93 aa7.44□□□□□ -1.22
SYNE1-234ENST00000536990 ATP5EP56381 51 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-234ENST00000536990 TNP2Q05952 138 aa7.44□□□□□ -1.22
SYNE1-234ENST00000536990 IGLV1-50A0A075B6I6 118 aa7.44□□□□□ -1.22
SYNE1-234ENST00000536990 A0A0U1RQV1 116 aa7.44□□□□□ -1.22
SYNE1-234ENST00000536990 FAM168BA1KXE4 195 aa7.44□□□□□ -1.22
SYNE1-234ENST00000536990 PRB2P02812 416 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-234ENST00000536990 SPRR1AP35321 89 aa7.44□□□□□ -1.22
SYNE1-234ENST00000536990 FP248Q71RG6 208 aaPredicted RBP7.44□□□□□ -1.22
SYNE1-234ENST00000536990 PRYO14603 147 aa7.43□□□□□ -1.22
SYNE1-234ENST00000536990 CASC10Q5T4H9 136 aa7.43□□□□□ -1.22
SYNE1-234ENST00000536990 KRTAP7-1Q8IUC3 87 aa7.43□□□□□ -1.22
SYNE1-234ENST00000536990 A0A1B0GW54 56 aa7.43□□□□□ -1.22
SYNE1-234ENST00000536990 SMIM26A0A096LP01 95 aa7.42□□□□□ -1.22
SYNE1-234ENST00000536990 FUSP35637 526 aaKnown RBP eCLIP7.42□□□□□ -1.22
SYNE1-234ENST00000536990 ST20-AS1Q8NBB2 130 aa7.42□□□□□ -1.22
SYNE1-234ENST00000536990 C1orf137Q5JT78 98 aa7.41□□□□□ -1.22
SYNE1-234ENST00000536990 ETDCA0A1B0GVM5 59 aa7.4□□□□□ -1.22
SYNE1-234ENST00000536990 Q8NBF4 154 aa7.4□□□□□ -1.23
SYNE1-234ENST00000536990 SPRR4Q96PI1 79 aa7.38□□□□□ -1.23
SYNE1-234ENST00000536990 LINC00474Q9P2X8 69 aa7.38□□□□□ -1.23
SYNE1-234ENST00000536990 SMIM29Q86T20 159 aa7.38□□□□□ -1.23
SYNE1-234ENST00000536990 HIGD2AQ9BW72 106 aa7.38□□□□□ -1.23
SYNE1-234ENST00000536990 K7EIL1 84 aa7.37□□□□□ -1.23
SYNE1-234ENST00000536990 DNAH1Q9P2D7 4330 aa7.37□□□□□ -1.23
SYNE1-234ENST00000536990 HUWE1Q7Z6Z7 4374 aaKnown RBP7.37□□□□□ -1.23
SYNE1-234ENST00000536990 LCE6AA0A183 80 aa7.36□□□□□ -1.23
SYNE1-234ENST00000536990 MRPL55Q7Z7F7 128 aaKnown RBP7.36□□□□□ -1.23
SYNE1-234ENST00000536990 DSCR10P59022 87 aa7.36□□□□□ -1.23
SYNE1-234ENST00000536990 FAM30AQ9NZY2 134 aa7.36□□□□□ -1.23
SYNE1-234ENST00000536990 COL6A5A8TX70 2615 aa7.36□□□□□ -1.23
SYNE1-234ENST00000536990 LINC00336Q6ZUF6 198 aa7.35□□□□□ -1.23
SYNE1-234ENST00000536990 NBEAL1Q6ZS30 2694 aa7.34□□□□□ -1.23
SYNE1-234ENST00000536990 FAM229BQ4G0N7 80 aa7.34□□□□□ -1.23
SYNE1-234ENST00000536990 UBE2BP63146 152 aa7.33□□□□□ -1.24
SYNE1-234ENST00000536990 BAHCC1Q9P281 2608 aa7.33□□□□□ -1.24
SYNE1-234ENST00000536990 K7EQZ3 153 aa7.32□□□□□ -1.24
SYNE1-234ENST00000536990 REG3GQ6UW15 175 aa7.32□□□□□ -1.24
SYNE1-234ENST00000536990 LINC00476Q8WZB0 136 aa7.31□□□□□ -1.24
SYNE1-234ENST00000536990 ZCCHC13Q8WW36 166 aaKnown RBP7.3□□□□□ -1.24
SYNE1-234ENST00000536990 PRO0628Q9UI54 55 aa7.3□□□□□ -1.24
SYNE1-234ENST00000536990 A0A0G2JQZ4 141 aa7.29□□□□□ -1.24
SYNE1-234ENST00000536990 A0A1W2PNN7 141 aa7.29□□□□□ -1.24
SYNE1-234ENST00000536990 IGFL1Q6UW32 110 aa7.28□□□□□ -1.24
SYNE1-234ENST00000536990 PSCAO43653 123 aa7.27□□□□□ -1.24
SYNE1-234ENST00000536990 KRTAP1-5Q9BYS1 174 aa7.27□□□□□ -1.24
SYNE1-234ENST00000536990 IGKV2-24A0A0C4DH68 120 aa7.27□□□□□ -1.25
SYNE1-234ENST00000536990 A0A096LNI7 61 aa7.27□□□□□ -1.25
SYNE1-234ENST00000536990 HCG22E2RYF7 251 aa7.27□□□□□ -1.25
SYNE1-234ENST00000536990 C16orf90A8MZG2 172 aa7.26□□□□□ -1.25
SYNE1-234ENST00000536990 UBE2DNLQ8IWF7 75 aa7.26□□□□□ -1.25
SYNE1-234ENST00000536990 IGLV8-61A0A075B6I0 122 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms