RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 PCNTO95613 3336 aa1.48□□□□□ -2.17
SKA3-207ENST00000536239 SDK1Q7Z5N4 2213 aa1.47□□□□□ -2.17
SKA3-207ENST00000536239 TECTAO75443 2155 aa1.47□□□□□ -2.17
SKA3-207ENST00000536239 GVQW2A0A096LPI5 108 aaPredicted RBP1.47□□□□□ -2.17
SKA3-207ENST00000536239 INSP01308 110 aa1.47□□□□□ -2.17
SKA3-207ENST00000536239 ACYP2P14621 99 aa1.47□□□□□ -2.17
SKA3-207ENST00000536239 CMC4P56277 68 aaPredicted RBP1.47□□□□□ -2.17
SKA3-207ENST00000536239 WFDC13Q8IUB5 93 aa1.47□□□□□ -2.17
SKA3-207ENST00000536239 ABCA4P78363 2273 aa1.47□□□□□ -2.17
SKA3-207ENST00000536239 GOLGB1Q14789 3259 aaKnown RBP1.46□□□□□ -2.18
SKA3-207ENST00000536239 CENPFP49454 3210 aa1.46□□□□□ -2.18
SKA3-207ENST00000536239 MGAQ8IWI9 3026 aa1.46□□□□□ -2.18
SKA3-207ENST00000536239 TRGV1A0A0A0MS02 117 aa1.46□□□□□ -2.18
SKA3-207ENST00000536239 NUPR2A6NF83 97 aa1.46□□□□□ -2.18
SKA3-207ENST00000536239 G3V318 75 aa1.46□□□□□ -2.18
SKA3-207ENST00000536239 DEFB113Q30KQ7 82 aa1.46□□□□□ -2.18
SKA3-207ENST00000536239 LUZP6Q538Z0 58 aa1.46□□□□□ -2.18
SKA3-207ENST00000536239 KRTAP26-1Q6PEX3 210 aa1.46□□□□□ -2.18
SKA3-207ENST00000536239 WFDC10BQ8IUB3 73 aa1.46□□□□□ -2.18
SKA3-207ENST00000536239 PRO3102Q9H379 93 aa1.46□□□□□ -2.18
SKA3-207ENST00000536239 C8orf17Q9NRJ1 99 aa1.46□□□□□ -2.18
SKA3-207ENST00000536239 ZFHX3Q15911 3703 aa1.45□□□□□ -2.18
SKA3-207ENST00000536239 WNK2Q9Y3S1 2297 aa1.45□□□□□ -2.18
SKA3-207ENST00000536239 IGKV3OR2-268A0A0C4DH90 116 aa1.45□□□□□ -2.18
SKA3-207ENST00000536239 A8MUU9 505 aa1.45□□□□□ -2.18
SKA3-207ENST00000536239 GIG44P09565 113 aaPredicted RBP1.45□□□□□ -2.18
SKA3-207ENST00000536239 HTN1P15515 57 aa1.45□□□□□ -2.18
SKA3-207ENST00000536239 EGFEM1PQ0D2K5 195 aa1.45□□□□□ -2.18
SKA3-207ENST00000536239 CASC10Q5T4H9 136 aa1.45□□□□□ -2.18
SKA3-207ENST00000536239 C5orf56Q8N8D9 126 aa1.45□□□□□ -2.18
SKA3-207ENST00000536239 C7orf33Q8WU49 177 aa1.45□□□□□ -2.18
SKA3-207ENST00000536239 CACNA1GO43497 2377 aa1.45□□□□□ -2.18
SKA3-207ENST00000536239 AHCTF1Q8WYP5 2266 aa1.45□□□□□ -2.18
SKA3-207ENST00000536239 IGKV2-24A0A0C4DH68 120 aa1.44□□□□□ -2.18
SKA3-207ENST00000536239 LYNX1G3V0Z9 82 aa1.44□□□□□ -2.18
SKA3-207ENST00000536239 ANGP03950 147 aaKnown RBP1.44□□□□□ -2.18
SKA3-207ENST00000536239 IGLV7-43P04211 117 aa1.44□□□□□ -2.18
SKA3-207ENST00000536239 DEFB131AP59861 70 aa1.44□□□□□ -2.18
SKA3-207ENST00000536239 DEFB116Q30KQ4 102 aa1.44□□□□□ -2.18
SKA3-207ENST00000536239 PCOTHQ58A44 107 aa1.44□□□□□ -2.18
SKA3-207ENST00000536239 Q5W150 140 aa1.44□□□□□ -2.18
SKA3-207ENST00000536239 LINC00472Q9H8W2 130 aa1.44□□□□□ -2.18
SKA3-207ENST00000536239 U3KQA8 63 aa1.44□□□□□ -2.18
SKA3-207ENST00000536239 SRCAPQ6ZRS2 3230 aa1.44□□□□□ -2.18
SKA3-207ENST00000536239 IGLV8-61A0A075B6I0 122 aa1.43□□□□□ -2.18
SKA3-207ENST00000536239 A6NDX4 124 aa1.43□□□□□ -2.18
SKA3-207ENST00000536239 TLX1NBP0CAT3 122 aa1.43□□□□□ -2.18
SKA3-207ENST00000536239 UNQ6190/PRO20217Q6UXQ8 127 aa1.43□□□□□ -2.18
SKA3-207ENST00000536239 DEFB119Q8N690 84 aa1.43□□□□□ -2.18
SKA3-207ENST00000536239 DEFB105AQ8NG35 78 aa1.43□□□□□ -2.18
SKA3-207ENST00000536239 C6orf48Q9UBA6 75 aa1.43□□□□□ -2.18
SKA3-207ENST00000536239 CRCT1Q9UGL9 99 aa1.43□□□□□ -2.18
SKA3-207ENST00000536239 SPTBN1Q01082 2364 aaKnown RBP1.43□□□□□ -2.18
SKA3-207ENST00000536239 DNAH12Q6ZR08 3092 aa1.43□□□□□ -2.18
SKA3-207ENST00000536239 KMT2BQ9UMN6 2715 aaPredicted RBP1.42□□□□□ -2.18
SKA3-207ENST00000536239 DEFB109BQ30KR1 87 aa1.42□□□□□ -2.18
SKA3-207ENST00000536239 SPINT4Q6UDR6 99 aa1.42□□□□□ -2.18
SKA3-207ENST00000536239 CLPSL2Q6UWE3 100 aa1.42□□□□□ -2.18
SKA3-207ENST00000536239 Q6ZRX8 168 aa1.42□□□□□ -2.18
SKA3-207ENST00000536239 LINC00304Q8N9R0 145 aa1.42□□□□□ -2.18
SKA3-207ENST00000536239 C16orf74Q96GX8 76 aa1.42□□□□□ -2.18
SKA3-207ENST00000536239 MMP24-AS1A0A0U1RRL7 71 aa1.41□□□□□ -2.18
SKA3-207ENST00000536239 IGFL1Q6UW32 110 aa1.41□□□□□ -2.18
SKA3-207ENST00000536239 CAMK2N1Q7Z7J9 78 aa1.41□□□□□ -2.18
SKA3-207ENST00000536239 TMEM105Q8N8V8 129 aa1.41□□□□□ -2.18
SKA3-207ENST00000536239 CCL19Q99731 98 aa1.41□□□□□ -2.18
SKA3-207ENST00000536239 TNRC18O15417 2968 aaPredicted RBP1.4□□□□□ -2.19
SKA3-207ENST00000536239 ZZEF1O43149 2961 aa1.4□□□□□ -2.19
SKA3-207ENST00000536239 A0A087WTM6 91 aa1.4□□□□□ -2.19
SKA3-207ENST00000536239 SPRR5A0A1B0GTR4 108 aa1.4□□□□□ -2.19
SKA3-207ENST00000536239 H3BUX3 64 aa1.4□□□□□ -2.19
SKA3-207ENST00000536239 SPRR1AP35321 89 aa1.4□□□□□ -2.19
SKA3-207ENST00000536239 RPL37AP61513 92 aaKnown RBP1.4□□□□□ -2.19
SKA3-207ENST00000536239 KRTAP4-1Q9BYQ7 146 aa1.4□□□□□ -2.19
SKA3-207ENST00000536239 NOP10Q9NPE3 64 aaKnown RBP1.4□□□□□ -2.19
SKA3-207ENST00000536239 CFAP54Q96N23 3096 aa1.39□□□□□ -2.19
SKA3-207ENST00000536239 A0A1B0GVX0 72 aa1.39□□□□□ -2.19
SKA3-207ENST00000536239 LY6G6CO95867 125 aa1.39□□□□□ -2.19
SKA3-207ENST00000536239 LYNX1P0DP58 116 aa1.39□□□□□ -2.19
SKA3-207ENST00000536239 DEFB132Q7Z7B7 95 aa1.39□□□□□ -2.19
SKA3-207ENST00000536239 CIRBP-AS1Q8TBR5 109 aa1.39□□□□□ -2.19
SKA3-207ENST00000536239 Q96NJ1 140 aa1.39□□□□□ -2.19
SKA3-207ENST00000536239 MRPL34Q9BQ48 92 aaKnown RBP1.39□□□□□ -2.19
SKA3-207ENST00000536239 CHD7Q9P2D1 2997 aa1.39□□□□□ -2.19
SKA3-207ENST00000536239 FAM186AA6NE01 2351 aa1.39□□□□□ -2.19
SKA3-207ENST00000536239 CACNA1EQ15878 2313 aa1.38□□□□□ -2.19
SKA3-207ENST00000536239 PANO1I0J062 215 aa1.38□□□□□ -2.19
SKA3-207ENST00000536239 BRD3OSQ6XYD6 125 aa1.38□□□□□ -2.19
SKA3-207ENST00000536239 SSBP3-AS1Q7Z2R9 100 aa1.38□□□□□ -2.19
SKA3-207ENST00000536239 C4orf3Q8WVX3 66 aa1.38□□□□□ -2.19
SKA3-207ENST00000536239 PRO0255Q9UI72 69 aa1.38□□□□□ -2.19
SKA3-207ENST00000536239 SPTBN2O15020 2390 aa1.38□□□□□ -2.19
SKA3-207ENST00000536239 WNK1Q9H4A3 2382 aa1.38□□□□□ -2.19
SKA3-207ENST00000536239 CEP250Q9BV73 2442 aa1.38□□□□□ -2.19
SKA3-207ENST00000536239 NBEAQ8NFP9 2946 aa1.38□□□□□ -2.19
SKA3-207ENST00000536239 APC2O95996 2303 aa1.37□□□□□ -2.19
SKA3-207ENST00000536239 NBDYA0A0U1RRE5 68 aa1.37□□□□□ -2.19
SKA3-207ENST00000536239 C15orf56Q8N910 161 aa1.37□□□□□ -2.19
SKA3-207ENST00000536239 COL6A6A6NMZ7 2263 aa1.37□□□□□ -2.19
SKA3-207ENST00000536239 PKDREJQ9NTG1 2253 aa1.37□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms