RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 COX7B2Q8TF08 81 aa4.36□□□□□ -1.71
CD44-232ENST00000531118 CHCHD1Q96BP2 118 aaKnown RBP4.36□□□□□ -1.71
CD44-232ENST00000531118 IGLV9-49A0A0B4J1Y8 123 aa4.35□□□□□ -1.71
CD44-232ENST00000531118 SMIM1B2RUZ4 78 aa4.35□□□□□ -1.71
CD44-232ENST00000531118 KRTAP6-3Q3LI67 103 aa4.35□□□□□ -1.71
CD44-232ENST00000531118 SPINK8P0C7L1 97 aa4.34□□□□□ -1.71
CD44-232ENST00000531118 PMCHL1Q16048 86 aa4.34□□□□□ -1.71
CD44-232ENST00000531118 SFTA2Q6UW10 78 aa4.34□□□□□ -1.71
CD44-232ENST00000531118 BAGE3Q86Y29 109 aa4.34□□□□□ -1.71
CD44-232ENST00000531118 Q8NDZ9 215 aa4.34□□□□□ -1.71
CD44-232ENST00000531118 HSBP1O75506 76 aa4.33□□□□□ -1.72
CD44-232ENST00000531118 IGLC3P0DOY3 106 aa4.33□□□□□ -1.72
CD44-232ENST00000531118 TMEM170BQ5T4T1 132 aa4.33□□□□□ -1.72
CD44-232ENST00000531118 YPEL4Q96NS1 127 aa4.33□□□□□ -1.72
CD44-232ENST00000531118 A0A096LNJ9 63 aa4.32□□□□□ -1.72
CD44-232ENST00000531118 SSBP3-AS1Q7Z2R9 100 aa4.32□□□□□ -1.72
CD44-232ENST00000531118 SLC7A5P1Q8MH63 180 aa4.32□□□□□ -1.72
CD44-232ENST00000531118 IFI27L1Q96BM0 104 aa4.32□□□□□ -1.72
CD44-232ENST00000531118 CHTOPQ9Y3Y2 248 aaKnown RBP4.32□□□□□ -1.72
CD44-232ENST00000531118 TRAV12-1A0A0B4J245 112 aa4.31□□□□□ -1.72
CD44-232ENST00000531118 TRGC2P03986 189 aa4.31□□□□□ -1.72
CD44-232ENST00000531118 ZNF22P17026 224 aaPredicted RBP4.31□□□□□ -1.72
CD44-232ENST00000531118 RPL37P61927 97 aaKnown RBP4.31□□□□□ -1.72
CD44-232ENST00000531118 RPL24P83731 157 aaKnown RBP4.31□□□□□ -1.72
CD44-232ENST00000531118 COX17Q14061 63 aa4.31□□□□□ -1.72
CD44-232ENST00000531118 GAGE2AQ6NT46 116 aa4.31□□□□□ -1.72
CD44-232ENST00000531118 SMCR5Q8TEV8 140 aa4.31□□□□□ -1.72
CD44-232ENST00000531118 LEPROTL1O95214 131 aa4.3□□□□□ -1.72
CD44-232ENST00000531118 IGLV6-57P01721 117 aa4.3□□□□□ -1.72
CD44-232ENST00000531118 MT2AP02795 61 aa4.3□□□□□ -1.72
CD44-232ENST00000531118 PFN2P35080 140 aa4.3□□□□□ -1.72
CD44-232ENST00000531118 SND1-IT1Q9HBX3 110 aa4.3□□□□□ -1.72
CD44-232ENST00000531118 HSPB8Q9UJY1 196 aa4.3□□□□□ -1.72
CD44-232ENST00000531118 C11orf86A6NJI1 115 aa4.29□□□□□ -1.72
CD44-232ENST00000531118 ATP6V1G1O75348 118 aa4.29□□□□□ -1.72
CD44-232ENST00000531118 Q6Q795 121 aa4.29□□□□□ -1.72
CD44-232ENST00000531118 ERG28Q9UKR5 140 aa4.29□□□□□ -1.72
CD44-232ENST00000531118 COLCA2A8K830 154 aa4.28□□□□□ -1.72
CD44-232ENST00000531118 LINC00587B1AMM8 73 aa4.28□□□□□ -1.72
CD44-232ENST00000531118 H0Y8G0 127 aa4.28□□□□□ -1.72
CD44-232ENST00000531118 SERF1AO75920 110 aa4.28□□□□□ -1.72
CD44-232ENST00000531118 SPRR1AP35321 89 aa4.28□□□□□ -1.72
CD44-232ENST00000531118 C9orf153Q5TBE3 101 aa4.28□□□□□ -1.72
CD44-232ENST00000531118 LIMD2Q9BT23 127 aa4.28□□□□□ -1.72
CD44-232ENST00000531118 LINC00846Q9NV44 126 aa4.28□□□□□ -1.72
CD44-232ENST00000531118 TMEM223A0PJW6 202 aa4.27□□□□□ -1.73
CD44-232ENST00000531118 MT1FP04733 61 aa4.27□□□□□ -1.73
CD44-232ENST00000531118 PLNP26678 52 aa4.27□□□□□ -1.73
CD44-232ENST00000531118 LINC00158P58513 81 aa4.27□□□□□ -1.73
CD44-232ENST00000531118 HERV-K104P63124 156 aa4.27□□□□□ -1.73
CD44-232ENST00000531118 KRTAP19-6Q3LI70 58 aa4.27□□□□□ -1.73
CD44-232ENST00000531118 ZNF625Q96I27 306 aaPredicted RBP4.27□□□□□ -1.73
CD44-232ENST00000531118 ETDCA0A1B0GVM5 59 aa4.26□□□□□ -1.73
CD44-232ENST00000531118 FABP4P15090 132 aa4.26□□□□□ -1.73
CD44-232ENST00000531118 HERVK_113P61574 105 aa4.26□□□□□ -1.73
CD44-232ENST00000531118 KRTAP20-1Q3LI63 56 aa4.26□□□□□ -1.73
CD44-232ENST00000531118 MAP1LC3CQ9BXW4 147 aa4.26□□□□□ -1.73
CD44-232ENST00000531118 MYMXA0A1B0GTQ4 84 aa4.25□□□□□ -1.73
CD44-232ENST00000531118 ERC2-IT1O76042 136 aa4.25□□□□□ -1.73
CD44-232ENST00000531118 DPM2O94777 84 aa4.25□□□□□ -1.73
CD44-232ENST00000531118 MEIG1Q5JSS6 88 aa4.25□□□□□ -1.73
CD44-232ENST00000531118 S100A12P80511 92 aa4.24□□□□□ -1.73
CD44-232ENST00000531118 LEPROTO15243 131 aa4.23□□□□□ -1.73
CD44-232ENST00000531118 IGKCP01834 107 aa4.23□□□□□ -1.73
CD44-232ENST00000531118 LGALS3P17931 250 aaKnown RBP4.23□□□□□ -1.73
CD44-232ENST00000531118 KCNQ1DNQ9H478 68 aa4.23□□□□□ -1.73
CD44-232ENST00000531118 A0A0U1RRA0 63 aa4.22□□□□□ -1.73
CD44-232ENST00000531118 NCR3O14931 201 aa4.22□□□□□ -1.73
CD44-232ENST00000531118 HIST1H2BKO60814 126 aa4.22□□□□□ -1.73
CD44-232ENST00000531118 HIST1H2BJP06899 126 aa4.22□□□□□ -1.73
CD44-232ENST00000531118 SMIM13P0DJ93 91 aa4.22□□□□□ -1.73
CD44-232ENST00000531118 HIST1H2BOP23527 126 aa4.22□□□□□ -1.73
CD44-232ENST00000531118 HIST1H2BBP33778 126 aa4.22□□□□□ -1.73
CD44-232ENST00000531118 NMUP48645 174 aa4.22□□□□□ -1.73
CD44-232ENST00000531118 HIST1H2BDP58876 126 aa4.22□□□□□ -1.73
CD44-232ENST00000531118 HIST1H2BCP62807 126 aa4.22□□□□□ -1.73
CD44-232ENST00000531118 HIST2H2BEQ16778 126 aa4.22□□□□□ -1.73
CD44-232ENST00000531118 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.22□□□□□ -1.73
CD44-232ENST00000531118 HIST1H2BHQ93079 126 aa4.22□□□□□ -1.73
CD44-232ENST00000531118 HIST1H2BNQ99877 126 aa4.22□□□□□ -1.73
CD44-232ENST00000531118 HIST1H2BMQ99879 126 aa4.22□□□□□ -1.73
CD44-232ENST00000531118 MIEN1Q9BRT3 115 aa4.22□□□□□ -1.73
CD44-232ENST00000531118 J3QQQ9 107 aa4.21□□□□□ -1.74
CD44-232ENST00000531118 HRCT1Q6UXD1 115 aa4.21□□□□□ -1.74
CD44-232ENST00000531118 BOD1L2Q8IYS8 172 aa4.21□□□□□ -1.74
CD44-232ENST00000531118 MIR7-3HGQ8N6C7 128 aa4.21□□□□□ -1.74
CD44-232ENST00000531118 Q9BRP9 147 aa4.21□□□□□ -1.74
CD44-232ENST00000531118 SYS1-DBNDD2H3BUS1 97 aa4.2□□□□□ -1.74
CD44-232ENST00000531118 PMCHL2Q9BQD1 86 aa4.2□□□□□ -1.74
CD44-232ENST00000531118 TRBV10-3A0A0K0K1G6 114 aa4.19□□□□□ -1.74
CD44-232ENST00000531118 AKR1D1P51857 326 aa4.19□□□□□ -1.74
CD44-232ENST00000531118 PET117Q6UWS5 81 aa4.19□□□□□ -1.74
CD44-232ENST00000531118 C20orf202A1L168 122 aa4.18□□□□□ -1.74
CD44-232ENST00000531118 E9PLD3 99 aa4.18□□□□□ -1.74
CD44-232ENST00000531118 S100A1P23297 94 aa4.18□□□□□ -1.74
CD44-232ENST00000531118 KRTAP10-10P60014 251 aa4.18□□□□□ -1.74
CD44-232ENST00000531118 Q6ZRX8 168 aa4.18□□□□□ -1.74
CD44-232ENST00000531118 CBY1Q9Y3M2 126 aa4.18□□□□□ -1.74
CD44-232ENST00000531118 MDN1Q9NU22 5596 aa4.17□□□□□ -1.74
CD44-232ENST00000531118 LOC107984156A0A0G2JMH3 177 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms