RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 SNCGO76070 127 aa13.46□□□□□ -0.25
VPS28-212ENST00000530836 KRTAP7-1Q8IUC3 87 aa13.46□□□□□ -0.25
VPS28-212ENST00000530836 DNAH5Q8TE73 4624 aa13.46□□□□□ -0.26
VPS28-212ENST00000530836 PRO0461Q9UI25 63 aa13.45□□□□□ -0.26
VPS28-212ENST00000530836 BIRC6Q9NR09 4857 aa13.44□□□□□ -0.26
VPS28-212ENST00000530836 IGLV1-50A0A075B6I6 118 aa13.44□□□□□ -0.26
VPS28-212ENST00000530836 M0QXV9 152 aa13.44□□□□□ -0.26
VPS28-212ENST00000530836 LINC00167Q96N53 147 aa13.44□□□□□ -0.26
VPS28-212ENST00000530836 A0A1W2PNN7 141 aa13.43□□□□□ -0.26
VPS28-212ENST00000530836 C9JAW5 83 aa13.43□□□□□ -0.26
VPS28-212ENST00000530836 PRYO14603 147 aa13.43□□□□□ -0.26
VPS28-212ENST00000530836 FAM218AQ96MZ4 157 aa13.43□□□□□ -0.26
VPS28-212ENST00000530836 CHTF8P0CG12 524 aa13.42□□□□□ -0.26
VPS28-212ENST00000530836 SLC25A20O43772 301 aa13.41□□□□□ -0.26
VPS28-212ENST00000530836 DNAL4O96015 105 aa13.41□□□□□ -0.26
VPS28-212ENST00000530836 SPACA4Q8TDM5 124 aa13.41□□□□□ -0.26
VPS28-212ENST00000530836 LRP1BQ9NZR2 4599 aa13.41□□□□□ -0.26
VPS28-212ENST00000530836 COX7BP24311 80 aa13.4□□□□□ -0.26
VPS28-212ENST00000530836 A0A087WYN8 130 aa13.39□□□□□ -0.27
VPS28-212ENST00000530836 LINC01600Q96MT4 127 aa13.39□□□□□ -0.27
VPS28-212ENST00000530836 H3BT86 120 aa13.39□□□□□ -0.27
VPS28-212ENST00000530836 ELOF1P60002 83 aaKnown RBP13.39□□□□□ -0.27
VPS28-212ENST00000530836 LINC00575Q6W349 94 aa13.39□□□□□ -0.27
VPS28-212ENST00000530836 DPH3Q96FX2 82 aa13.39□□□□□ -0.27
VPS28-212ENST00000530836 RPL37AP8A6NKH3 93 aa13.38□□□□□ -0.27
VPS28-212ENST00000530836 EPM2AB3EWF7 344 aa13.37□□□□□ -0.27
VPS28-212ENST00000530836 KRTAP10-1P60331 282 aa13.37□□□□□ -0.27
VPS28-212ENST00000530836 MTURNQ8N3F0 131 aa13.37□□□□□ -0.27
VPS28-212ENST00000530836 SPRR1AP35321 89 aa13.36□□□□□ -0.27
VPS28-212ENST00000530836 ANKRD29Q8N6D5 301 aa13.36□□□□□ -0.27
VPS28-212ENST00000530836 hADV29S1A0JD25 119 aa13.35□□□□□ -0.27
VPS28-212ENST00000530836 SMCPP49901 116 aaPredicted RBP13.35□□□□□ -0.27
VPS28-212ENST00000530836 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.35□□□□□ -0.27
VPS28-212ENST00000530836 PANO1I0J062 215 aa13.33□□□□□ -0.28
VPS28-212ENST00000530836 REG3GQ6UW15 175 aa13.33□□□□□ -0.28
VPS28-212ENST00000530836 INAFM2P0DMQ5 153 aa13.32□□□□□ -0.28
VPS28-212ENST00000530836 LINC00528Q8N1L1 170 aa13.32□□□□□ -0.28
VPS28-212ENST00000530836 ETDCA0A1B0GVM5 59 aa13.31□□□□□ -0.28
VPS28-212ENST00000530836 KRTAP4-16G5E9R7 235 aaPredicted RBP13.31□□□□□ -0.28
VPS28-212ENST00000530836 UBE2BP63146 152 aa13.31□□□□□ -0.28
VPS28-212ENST00000530836 BAALC-AS2P0C853 105 aa13.3□□□□□ -0.28
VPS28-212ENST00000530836 PHF5AQ7RTV0 110 aaKnown RBP13.3□□□□□ -0.28
VPS28-212ENST00000530836 ORMDL1Q9P0S3 153 aa13.3□□□□□ -0.28
VPS28-212ENST00000530836 H3BQ85 93 aa13.29□□□□□ -0.28
VPS28-212ENST00000530836 GHRHP01286 108 aa13.29□□□□□ -0.28
VPS28-212ENST00000530836 PLAC8Q9NZF1 115 aa13.29□□□□□ -0.28
VPS28-212ENST00000530836 ETDBQ3ZM63 59 aa13.28□□□□□ -0.28
VPS28-212ENST00000530836 Q6ZRX8 168 aa13.28□□□□□ -0.28
VPS28-212ENST00000530836 TEN1Q86WV5 123 aa13.28□□□□□ -0.28
VPS28-212ENST00000530836 DHRS4-AS1Q9P1J3 65 aa13.28□□□□□ -0.28
VPS28-212ENST00000530836 B5MCH6 92 aa13.28□□□□□ -0.28
VPS28-212ENST00000530836 KIAA1109Q2LD37 5005 aa13.27□□□□□ -0.29
VPS28-212ENST00000530836 CDK2AP2O75956 126 aa13.27□□□□□ -0.29
VPS28-212ENST00000530836 OCIAD2Q56VL3 154 aa13.27□□□□□ -0.29
VPS28-212ENST00000530836 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP13.27□□□□□ -0.29
VPS28-212ENST00000530836 FAM30AQ9NZY2 134 aa13.25□□□□□ -0.29
VPS28-212ENST00000530836 APOBP04114 4563 aaKnown RBP13.24□□□□□ -0.29
VPS28-212ENST00000530836 TMEM256-PLSCR3K7ERE1 68 aa13.24□□□□□ -0.29
VPS28-212ENST00000530836 Q6ZSA8 131 aa13.24□□□□□ -0.29
VPS28-212ENST00000530836 DNAH8Q96JB1 4490 aa13.24□□□□□ -0.29
VPS28-212ENST00000530836 XGP55808 180 aa13.21□□□□□ -0.29
VPS28-212ENST00000530836 Q6ZQY7 126 aa13.21□□□□□ -0.29
VPS28-212ENST00000530836 RYR1P21817 5038 aa13.2□□□□□ -0.3
VPS28-212ENST00000530836 H0Y9J4 135 aa13.2□□□□□ -0.3
VPS28-212ENST00000530836 PPDPFLQ8WWR9 84 aa13.2□□□□□ -0.3
VPS28-212ENST00000530836 FAM19A1Q7Z5A9 133 aa13.18□□□□□ -0.3
VPS28-212ENST00000530836 J3QR89 54 aa13.17□□□□□ -0.3
VPS28-212ENST00000530836 K7ERU9 68 aa13.17□□□□□ -0.3
VPS28-212ENST00000530836 KRTAP11-1Q8IUC1 163 aa13.17□□□□□ -0.3
VPS28-212ENST00000530836 Q9BRP9 147 aa13.17□□□□□ -0.3
VPS28-212ENST00000530836 BCE1O60756 84 aa13.16□□□□□ -0.3
VPS28-212ENST00000530836 HSPG2P98160 4391 aa13.16□□□□□ -0.3
VPS28-212ENST00000530836 HAMPP81172 84 aa13.14□□□□□ -0.31
VPS28-212ENST00000530836 TEX49A0A1B0GTD5 131 aa13.13□□□□□ -0.31
VPS28-212ENST00000530836 JMJD7-PLA2G4BH0Y9G9 81 aa13.12□□□□□ -0.31
VPS28-212ENST00000530836 SCXQ7RTU7 201 aa13.12□□□□□ -0.31
VPS28-212ENST00000530836 UBE2AP49459 152 aa13.11□□□□□ -0.31
VPS28-212ENST00000530836 CIRBP-AS1Q8TBR5 109 aa13.11□□□□□ -0.31
VPS28-212ENST00000530836 SMCR5Q8TEV8 140 aa13.11□□□□□ -0.31
VPS28-212ENST00000530836 HERC2O95714 4834 aa13.11□□□□□ -0.31
VPS28-212ENST00000530836 PRLHP81277 87 aa13.1□□□□□ -0.31
VPS28-212ENST00000530836 OBSCN-AS1Q96MR7 158 aa13.1□□□□□ -0.31
VPS28-212ENST00000530836 PSORS1C2Q9UIG4 136 aa13.07□□□□□ -0.32
VPS28-212ENST00000530836 IGLV5-48A0A075B6I7 105 aa13.06□□□□□ -0.32
VPS28-212ENST00000530836 LAMTOR3Q9UHA4 124 aa13.06□□□□□ -0.32
VPS28-212ENST00000530836 KRTAP13-1Q8IUC0 172 aa13.06□□□□□ -0.32
VPS28-212ENST00000530836 HIGD2AQ9BW72 106 aa13.06□□□□□ -0.32
VPS28-212ENST00000530836 ERC2-IT1O76042 136 aa13.05□□□□□ -0.32
VPS28-212ENST00000530836 SMR3BP02814 79 aaPredicted RBP13.04□□□□□ -0.32
VPS28-212ENST00000530836 KRTAP17-1Q9BYP8 105 aa13.04□□□□□ -0.32
VPS28-212ENST00000530836 NDUFV3P56181 108 aaKnown RBP13.02□□□□□ -0.32
VPS28-212ENST00000530836 LINC01547P58512 204 aaPredicted RBP13.02□□□□□ -0.32
VPS28-212ENST00000530836 Q8N1X5 172 aa13.02□□□□□ -0.32
VPS28-212ENST00000530836 Q8N377 158 aa13.02□□□□□ -0.32
VPS28-212ENST00000530836 DEFB105AQ8NG35 78 aa13.02□□□□□ -0.32
VPS28-212ENST00000530836 RBM3P98179 157 aaKnown RBP13.02□□□□□ -0.33
VPS28-212ENST00000530836 C1orf137Q5JT78 98 aa13.02□□□□□ -0.33
VPS28-212ENST00000530836 FAT1Q14517 4588 aa13.01□□□□□ -0.33
VPS28-212ENST00000530836 ST20-AS1Q8NBB2 130 aa13□□□□□ -0.33
VPS28-212ENST00000530836 ZNF861PO60384 105 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms