RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 C5orf47Q569G3 176 aa12.7□□□□□ -0.38
PCF11-203ENST00000530304 OXTP01178 125 aa12.69□□□□□ -0.38
PCF11-203ENST00000530304 C7orf33Q8WU49 177 aa12.69□□□□□ -0.38
PCF11-203ENST00000530304 CMYA5Q8N3K9 4069 aa12.69□□□□□ -0.38
PCF11-203ENST00000530304 DNAH10OSP0CZ25 163 aa12.68□□□□□ -0.38
PCF11-203ENST00000530304 DEFB105AQ8NG35 78 aa12.67□□□□□ -0.38
PCF11-203ENST00000530304 Q8N377 158 aa12.65□□□□□ -0.38
PCF11-203ENST00000530304 H7BZZ5 65 aa12.64□□□□□ -0.39
PCF11-203ENST00000530304 TLX1NBP0CAT3 122 aa12.64□□□□□ -0.39
PCF11-203ENST00000530304 KLKP1Q107X0 134 aa12.63□□□□□ -0.39
PCF11-203ENST00000530304 TM2D3Q9BRN9 247 aa12.62□□□□□ -0.39
PCF11-203ENST00000530304 RPL37AP8A6NKH3 93 aa12.62□□□□□ -0.39
PCF11-203ENST00000530304 NREPQ16612 68 aa12.62□□□□□ -0.39
PCF11-203ENST00000530304 SNURFQ9Y675 71 aa12.61□□□□□ -0.39
PCF11-203ENST00000530304 FAM168BA1KXE4 195 aa12.61□□□□□ -0.39
PCF11-203ENST00000530304 Q8N9L7 120 aa12.61□□□□□ -0.39
PCF11-203ENST00000530304 PLA2G2DQ9UNK4 145 aa12.61□□□□□ -0.39
PCF11-203ENST00000530304 C3orf84H3BNL1 204 aa12.6□□□□□ -0.39
PCF11-203ENST00000530304 KRTAP24-1Q3LI83 254 aa12.6□□□□□ -0.39
PCF11-203ENST00000530304 FAM236DA0A1B0GTK5 79 aa12.6□□□□□ -0.39
PCF11-203ENST00000530304 FAM236CP0DP71 79 aa12.6□□□□□ -0.39
PCF11-203ENST00000530304 CASC10Q5T4H9 136 aa12.6□□□□□ -0.39
PCF11-203ENST00000530304 LINC00588Q9Y4M8 146 aa12.59□□□□□ -0.39
PCF11-203ENST00000530304 IGLV5-48A0A075B6I7 105 aa12.59□□□□□ -0.39
PCF11-203ENST00000530304 Q6ZRX8 168 aa12.59□□□□□ -0.39
PCF11-203ENST00000530304 MRAPQ8TCY5 172 aa12.59□□□□□ -0.39
PCF11-203ENST00000530304 RMI2Q96E14 147 aa12.59□□□□□ -0.39
PCF11-203ENST00000530304 IGLV1-50A0A075B6I6 118 aa12.58□□□□□ -0.4
PCF11-203ENST00000530304 Q9BRP9 147 aa12.58□□□□□ -0.4
PCF11-203ENST00000530304 DHRS4-AS1Q9P1J3 65 aa12.58□□□□□ -0.4
PCF11-203ENST00000530304 KRTAP4-16G5E9R7 235 aaPredicted RBP12.58□□□□□ -0.4
PCF11-203ENST00000530304 BPY2O14599 106 aa12.58□□□□□ -0.4
PCF11-203ENST00000530304 DNAH3Q8TD57 4116 aa12.57□□□□□ -0.4
PCF11-203ENST00000530304 IGKV4-1P06312 121 aa12.57□□□□□ -0.4
PCF11-203ENST00000530304 C4orf26Q17RF5 130 aa12.57□□□□□ -0.4
PCF11-203ENST00000530304 FBN1P35555 2871 aaKnown RBP12.56□□□□□ -0.4
PCF11-203ENST00000530304 IGLV5-37A0A075B6J1 123 aa12.55□□□□□ -0.4
PCF11-203ENST00000530304 PRYO14603 147 aa12.55□□□□□ -0.4
PCF11-203ENST00000530304 KRTAP7-1Q8IUC3 87 aa12.55□□□□□ -0.4
PCF11-203ENST00000530304 DNAH1Q9P2D7 4330 aa12.55□□□□□ -0.4
PCF11-203ENST00000530304 SPRR1AP35321 89 aa12.55□□□□□ -0.4
PCF11-203ENST00000530304 FLNBO75369 2602 aaKnown RBP12.54□□□□□ -0.4
PCF11-203ENST00000530304 STAB1Q9NY15 2570 aa12.54□□□□□ -0.4
PCF11-203ENST00000530304 ETDCA0A1B0GVM5 59 aa12.54□□□□□ -0.4
PCF11-203ENST00000530304 Q5XG85 94 aa12.54□□□□□ -0.4
PCF11-203ENST00000530304 F8P00451 2351 aa12.53□□□□□ -0.4
PCF11-203ENST00000530304 F8WEM9 126 aa12.52□□□□□ -0.4
PCF11-203ENST00000530304 ST20-AS1Q8NBB2 130 aa12.52□□□□□ -0.4
PCF11-203ENST00000530304 HRCT1Q6UXD1 115 aa12.51□□□□□ -0.41
PCF11-203ENST00000530304 FUSP35637 526 aaKnown RBP eCLIP12.5□□□□□ -0.41
PCF11-203ENST00000530304 A0A1W2PNM2 257 aa12.5□□□□□ -0.41
PCF11-203ENST00000530304 TNP2Q05952 138 aa12.49□□□□□ -0.41
PCF11-203ENST00000530304 MRPL55Q7Z7F7 128 aaKnown RBP12.49□□□□□ -0.41
PCF11-203ENST00000530304 C1orf137Q5JT78 98 aa12.48□□□□□ -0.41
PCF11-203ENST00000530304 SERP1Q9Y6X1 66 aa12.48□□□□□ -0.41
PCF11-203ENST00000530304 PRB2P02812 416 aaPredicted RBP12.47□□□□□ -0.41
PCF11-203ENST00000530304 NDUFC1O43677 76 aa12.47□□□□□ -0.41
PCF11-203ENST00000530304 ERC2-IT1O76042 136 aa12.47□□□□□ -0.41
PCF11-203ENST00000530304 TMEM254Q8TBM7 123 aa12.47□□□□□ -0.41
PCF11-203ENST00000530304 A0A1B0GW54 56 aa12.46□□□□□ -0.41
PCF11-203ENST00000530304 MAST4O15021 2626 aa12.46□□□□□ -0.41
PCF11-203ENST00000530304 EPM2AB3EWF7 344 aa12.46□□□□□ -0.42
PCF11-203ENST00000530304 OCR1Q9BZK8 76 aa12.46□□□□□ -0.42
PCF11-203ENST00000530304 NOTCH1P46531 2555 aa12.45□□□□□ -0.42
PCF11-203ENST00000530304 UBE2BP63146 152 aa12.43□□□□□ -0.42
PCF11-203ENST00000530304 Q8NBF4 154 aa12.43□□□□□ -0.42
PCF11-203ENST00000530304 REG3GQ6UW15 175 aa12.41□□□□□ -0.42
PCF11-203ENST00000530304 SPRR4Q96PI1 79 aa12.41□□□□□ -0.42
PCF11-203ENST00000530304 HUWE1Q7Z6Z7 4374 aaKnown RBP12.4□□□□□ -0.42
PCF11-203ENST00000530304 A0A0U1RQV1 116 aa12.37□□□□□ -0.43
PCF11-203ENST00000530304 SMIM29Q86T20 159 aa12.37□□□□□ -0.43
PCF11-203ENST00000530304 K7EIL1 84 aa12.34□□□□□ -0.43
PCF11-203ENST00000530304 ATP5EP56381 51 aaPredicted RBP12.34□□□□□ -0.43
PCF11-203ENST00000530304 DSCR10P59022 87 aa12.33□□□□□ -0.44
PCF11-203ENST00000530304 LYSTQ99698 3801 aa12.33□□□□□ -0.44
PCF11-203ENST00000530304 FAM30AQ9NZY2 134 aa12.33□□□□□ -0.44
PCF11-203ENST00000530304 LINC00476Q8WZB0 136 aa12.32□□□□□ -0.44
PCF11-203ENST00000530304 HIGD2AQ9BW72 106 aa12.32□□□□□ -0.44
PCF11-203ENST00000530304 DNAH10Q8IVF4 4471 aa12.32□□□□□ -0.44
PCF11-203ENST00000530304 A0A096LNI7 61 aa12.32□□□□□ -0.44
PCF11-203ENST00000530304 BAHCC1Q9P281 2608 aa12.31□□□□□ -0.44
PCF11-203ENST00000530304 IGKV2-24A0A0C4DH68 120 aa12.31□□□□□ -0.44
PCF11-203ENST00000530304 NBEAL1Q6ZS30 2694 aa12.31□□□□□ -0.44
PCF11-203ENST00000530304 A0A0G2JQZ4 141 aa12.3□□□□□ -0.44
PCF11-203ENST00000530304 A0A1W2PNN7 141 aa12.3□□□□□ -0.44
PCF11-203ENST00000530304 KRTAP1-5Q9BYS1 174 aa12.3□□□□□ -0.44
PCF11-203ENST00000530304 C16orf90A8MZG2 172 aa12.29□□□□□ -0.44
PCF11-203ENST00000530304 K7EQZ3 153 aa12.29□□□□□ -0.44
PCF11-203ENST00000530304 PRLHP81277 87 aa12.29□□□□□ -0.44
PCF11-203ENST00000530304 SMIM26A0A096LP01 95 aa12.28□□□□□ -0.44
PCF11-203ENST00000530304 IGFL1Q6UW32 110 aa12.27□□□□□ -0.45
PCF11-203ENST00000530304 FP248Q71RG6 208 aaPredicted RBP12.26□□□□□ -0.45
PCF11-203ENST00000530304 CNBPP62633 177 aaKnown RBP12.25□□□□□ -0.45
PCF11-203ENST00000530304 DNAH9Q9NYC9 4486 aa12.24□□□□□ -0.45
PCF11-203ENST00000530304 PSCAO43653 123 aa12.24□□□□□ -0.45
PCF11-203ENST00000530304 LCE6AA0A183 80 aa12.24□□□□□ -0.45
PCF11-203ENST00000530304 LINC00336Q6ZUF6 198 aa12.23□□□□□ -0.45
PCF11-203ENST00000530304 COL6A5A8TX70 2615 aa12.23□□□□□ -0.45
PCF11-203ENST00000530304 LINC00474Q9P2X8 69 aa12.22□□□□□ -0.45
PCF11-203ENST00000530304 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms