RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 HIST2H2BEQ16778 126 aa5.98□□□□□ -1.45
CPSF1-203ENST00000527916 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.98□□□□□ -1.45
CPSF1-203ENST00000527916 S100A7L2Q5SY68 101 aa5.98□□□□□ -1.45
CPSF1-203ENST00000527916 FP248Q71RG6 208 aaPredicted RBP5.98□□□□□ -1.45
CPSF1-203ENST00000527916 HIST1H2BHQ93079 126 aa5.98□□□□□ -1.45
CPSF1-203ENST00000527916 HIST1H2BNQ99877 126 aa5.98□□□□□ -1.45
CPSF1-203ENST00000527916 HIST1H2BMQ99879 126 aa5.98□□□□□ -1.45
CPSF1-203ENST00000527916 SPINK1P00995 79 aa5.97□□□□□ -1.45
CPSF1-203ENST00000527916 JOSD1Q15040 202 aaPredicted RBP5.97□□□□□ -1.45
CPSF1-203ENST00000527916 ADAMTSL4-AS1Q5T5F5 129 aa5.97□□□□□ -1.45
CPSF1-203ENST00000527916 Q6ZRX8 168 aa5.97□□□□□ -1.45
CPSF1-203ENST00000527916 SSBP3-AS1Q7Z2R9 100 aa5.97□□□□□ -1.45
CPSF1-203ENST00000527916 CBY1Q9Y3M2 126 aa5.97□□□□□ -1.45
CPSF1-203ENST00000527916 TIMM17BO60830 172 aa5.96□□□□□ -1.46
CPSF1-203ENST00000527916 ERC2-IT1O76042 136 aa5.96□□□□□ -1.46
CPSF1-203ENST00000527916 LINC01545Q5VT33 79 aa5.96□□□□□ -1.46
CPSF1-203ENST00000527916 PET117Q6UWS5 81 aa5.96□□□□□ -1.46
CPSF1-203ENST00000527916 SOSTDC1Q6X4U4 206 aa5.96□□□□□ -1.46
CPSF1-203ENST00000527916 Q8NBF4 154 aa5.96□□□□□ -1.46
CPSF1-203ENST00000527916 Q9BRP9 147 aa5.96□□□□□ -1.46
CPSF1-203ENST00000527916 TRAV23DV6A0A075B6W5 121 aa5.95□□□□□ -1.46
CPSF1-203ENST00000527916 C5orf52A6NGY3 159 aa5.95□□□□□ -1.46
CPSF1-203ENST00000527916 EIF4EBP3O60516 100 aaPredicted RBP5.95□□□□□ -1.46
CPSF1-203ENST00000527916 GAGE2AQ6NT46 116 aa5.95□□□□□ -1.46
CPSF1-203ENST00000527916 ZNF73O43830 326 aaPredicted RBP5.94□□□□□ -1.46
CPSF1-203ENST00000527916 HINT1P49773 126 aaPredicted RBP5.94□□□□□ -1.46
CPSF1-203ENST00000527916 RPS29P62273 56 aaKnown RBP5.94□□□□□ -1.46
CPSF1-203ENST00000527916 LITAFQ99732 161 aa5.94□□□□□ -1.46
CPSF1-203ENST00000527916 CFC1BP0CG36 223 aa5.93□□□□□ -1.46
CPSF1-203ENST00000527916 KRTAP13-3Q3SY46 172 aa5.93□□□□□ -1.46
CPSF1-203ENST00000527916 COA6Q5JTJ3 125 aaKnown RBP5.93□□□□□ -1.46
CPSF1-203ENST00000527916 LINC00308Q8TCZ7 52 aa5.93□□□□□ -1.46
CPSF1-203ENST00000527916 KRTAP4-1Q9BYQ7 146 aa5.93□□□□□ -1.46
CPSF1-203ENST00000527916 SPANXCQ9NY87 97 aa5.93□□□□□ -1.46
CPSF1-203ENST00000527916 NPC2P61916 151 aa5.92□□□□□ -1.46
CPSF1-203ENST00000527916 IGLV9-49A0A0B4J1Y8 123 aa5.91□□□□□ -1.46
CPSF1-203ENST00000527916 C3orf79P0CE67 100 aa5.91□□□□□ -1.46
CPSF1-203ENST00000527916 MOBPQ13875 183 aa5.91□□□□□ -1.46
CPSF1-203ENST00000527916 LINC00518Q8N0U6 118 aa5.91□□□□□ -1.46
CPSF1-203ENST00000527916 ZNF815PA8K554 130 aa5.9□□□□□ -1.46
CPSF1-203ENST00000527916 SPANXDQ9BXN6 97 aa5.9□□□□□ -1.46
CPSF1-203ENST00000527916 SPRR1BP22528 89 aa5.89□□□□□ -1.47
CPSF1-203ENST00000527916 Q8N377 158 aa5.89□□□□□ -1.47
CPSF1-203ENST00000527916 SLC25A20O43772 301 aa5.88□□□□□ -1.47
CPSF1-203ENST00000527916 S100A1P23297 94 aa5.88□□□□□ -1.47
CPSF1-203ENST00000527916 AKR1D1P51857 326 aa5.88□□□□□ -1.47
CPSF1-203ENST00000527916 OR13C6PQ8NH95 151 aa5.88□□□□□ -1.47
CPSF1-203ENST00000527916 DHRS4-AS1Q9P1J3 65 aa5.88□□□□□ -1.47
CPSF1-203ENST00000527916 KRTDAPP60985 99 aa5.87□□□□□ -1.47
CPSF1-203ENST00000527916 SLC25A34Q6PIV7 304 aa5.87□□□□□ -1.47
CPSF1-203ENST00000527916 ST20-AS1Q8NBB2 130 aa5.87□□□□□ -1.47
CPSF1-203ENST00000527916 COPS9Q8WXC6 57 aa5.87□□□□□ -1.47
CPSF1-203ENST00000527916 TTTY13Q9BZ97 58 aa5.87□□□□□ -1.47
CPSF1-203ENST00000527916 C20orf202A1L168 122 aa5.86□□□□□ -1.47
CPSF1-203ENST00000527916 IFITM1P13164 125 aa5.86□□□□□ -1.47
CPSF1-203ENST00000527916 LCE2CQ5TA81 110 aa5.86□□□□□ -1.47
CPSF1-203ENST00000527916 Q6ZVH6 145 aa5.86□□□□□ -1.47
CPSF1-203ENST00000527916 TRBV7-6A0A0J9YX20 115 aa5.85□□□□□ -1.47
CPSF1-203ENST00000527916 KRTAP9-7A8MTY7 169 aa5.85□□□□□ -1.47
CPSF1-203ENST00000527916 ELOF1P60002 83 aaKnown RBP5.85□□□□□ -1.47
CPSF1-203ENST00000527916 C9orf153Q5TBE3 101 aa5.85□□□□□ -1.47
CPSF1-203ENST00000527916 SCGB1D4Q6XE38 83 aa5.85□□□□□ -1.47
CPSF1-203ENST00000527916 COX7BP24311 80 aa5.84□□□□□ -1.47
CPSF1-203ENST00000527916 MT1HP80294 61 aa5.84□□□□□ -1.47
CPSF1-203ENST00000527916 C6orf99Q4VX62 202 aa5.84□□□□□ -1.47
CPSF1-203ENST00000527916 SNRPEP62304 92 aaKnown RBP5.83□□□□□ -1.48
CPSF1-203ENST00000527916 ANKRD39Q53RE8 183 aa5.83□□□□□ -1.48
CPSF1-203ENST00000527916 LAMTOR3Q9UHA4 124 aa5.83□□□□□ -1.48
CPSF1-203ENST00000527916 A0A1B0GWB2 263 aa5.81□□□□□ -1.48
CPSF1-203ENST00000527916 LORP23490 312 aaPredicted RBP5.81□□□□□ -1.48
CPSF1-203ENST00000527916 TAL2Q16559 108 aa5.81□□□□□ -1.48
CPSF1-203ENST00000527916 XP32Q5T750 250 aa5.81□□□□□ -1.48
CPSF1-203ENST00000527916 TEX49A0A1B0GTD5 131 aa5.8□□□□□ -1.48
CPSF1-203ENST00000527916 A4D1N5 150 aa5.8□□□□□ -1.48
CPSF1-203ENST00000527916 KRTAP10-6P60371 365 aaPredicted RBP5.8□□□□□ -1.48
CPSF1-203ENST00000527916 CD164Q04900 197 aa5.8□□□□□ -1.48
CPSF1-203ENST00000527916 PCP2Q8IVA1 136 aa5.8□□□□□ -1.48
CPSF1-203ENST00000527916 MUSTN1Q8IVN3 82 aa5.8□□□□□ -1.48
CPSF1-203ENST00000527916 ATOH7Q8N100 152 aa5.8□□□□□ -1.48
CPSF1-203ENST00000527916 LIMD2Q9BT23 127 aa5.8□□□□□ -1.48
CPSF1-203ENST00000527916 TRAV13-2A0A0B4J235 113 aa5.79□□□□□ -1.48
CPSF1-203ENST00000527916 A6NDN8 102 aa5.79□□□□□ -1.48
CPSF1-203ENST00000527916 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.79□□□□□ -1.48
CPSF1-203ENST00000527916 KRTAP19-2Q3LHN2 52 aa5.79□□□□□ -1.48
CPSF1-203ENST00000527916 IGLV5-48A0A075B6I7 105 aa5.78□□□□□ -1.48
CPSF1-203ENST00000527916 M0R2T5 61 aa5.78□□□□□ -1.48
CPSF1-203ENST00000527916 PRO1933Q9H354 126 aa5.78□□□□□ -1.48
CPSF1-203ENST00000527916 Q5XG85 94 aa5.77□□□□□ -1.49
CPSF1-203ENST00000527916 SMIM29Q86T20 159 aa5.77□□□□□ -1.49
CPSF1-203ENST00000527916 DEFB105AQ8NG35 78 aa5.77□□□□□ -1.49
CPSF1-203ENST00000527916 Q1RN00 199 aa5.76□□□□□ -1.49
CPSF1-203ENST00000527916 HIST3H2BBQ8N257 126 aa5.76□□□□□ -1.49
CPSF1-203ENST00000527916 SMIM11BQ8TCY0 68 aa5.76□□□□□ -1.49
CPSF1-203ENST00000527916 HIST1H2BLQ99880 126 aa5.76□□□□□ -1.49
CPSF1-203ENST00000527916 NHP2Q9NX24 153 aaKnown RBP5.76□□□□□ -1.49
CPSF1-203ENST00000527916 IGLV8-61A0A075B6I0 122 aa5.75□□□□□ -1.49
CPSF1-203ENST00000527916 S100A2P29034 98 aa5.75□□□□□ -1.49
CPSF1-203ENST00000527916 HRCT1Q6UXD1 115 aa5.75□□□□□ -1.49
CPSF1-203ENST00000527916 H7C2G1 150 aa5.74□□□□□ -1.49
CPSF1-203ENST00000527916 HSBP1L1C9JCN9 74 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 175.5 ms