RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 SERTAD4-AS1Q5TG53 156 aa7.23□□□□□ -1.25
HDAC9-228ENST00000524023 RPS28P62857 69 aaKnown RBP7.22□□□□□ -1.25
HDAC9-228ENST00000524023 C7orf33Q8WU49 177 aa7.22□□□□□ -1.25
HDAC9-228ENST00000524023 TRAV7A0A075B6U4 112 aa7.22□□□□□ -1.25
HDAC9-228ENST00000524023 MAST4O15021 2626 aa7.22□□□□□ -1.25
HDAC9-228ENST00000524023 TRAV10A0A0B4J240 114 aa7.21□□□□□ -1.26
HDAC9-228ENST00000524023 TLX1NBP0CAT3 122 aa7.21□□□□□ -1.26
HDAC9-228ENST00000524023 DPH3Q96FX2 82 aa7.21□□□□□ -1.26
HDAC9-228ENST00000524023 NOTCH1P46531 2555 aa7.21□□□□□ -1.26
HDAC9-228ENST00000524023 SCXQ7RTU7 201 aa7.2□□□□□ -1.26
HDAC9-228ENST00000524023 C20orf197Q8N268 126 aa7.2□□□□□ -1.26
HDAC9-228ENST00000524023 PLA2G2DQ9UNK4 145 aa7.19□□□□□ -1.26
HDAC9-228ENST00000524023 LINC00588Q9Y4M8 146 aa7.19□□□□□ -1.26
HDAC9-228ENST00000524023 HUWE1Q7Z6Z7 4374 aaKnown RBP7.18□□□□□ -1.26
HDAC9-228ENST00000524023 CASC10Q5T4H9 136 aa7.18□□□□□ -1.26
HDAC9-228ENST00000524023 Q8N377 158 aa7.18□□□□□ -1.26
HDAC9-228ENST00000524023 MRAPQ8TCY5 172 aa7.18□□□□□ -1.26
HDAC9-228ENST00000524023 DEFB105AQ8NG35 78 aa7.18□□□□□ -1.26
HDAC9-228ENST00000524023 IGLV5-37A0A075B6J1 123 aa7.16□□□□□ -1.26
HDAC9-228ENST00000524023 FAM168BA1KXE4 195 aa7.16□□□□□ -1.26
HDAC9-228ENST00000524023 RPL37AP8A6NKH3 93 aa7.16□□□□□ -1.26
HDAC9-228ENST00000524023 KRTAP4-16G5E9R7 235 aaPredicted RBP7.16□□□□□ -1.26
HDAC9-228ENST00000524023 FAM19A5Q7Z5A7 132 aaPredicted RBP7.16□□□□□ -1.26
HDAC9-228ENST00000524023 IGLV1-50A0A075B6I6 118 aa7.16□□□□□ -1.26
HDAC9-228ENST00000524023 Q6ZRX8 168 aa7.16□□□□□ -1.26
HDAC9-228ENST00000524023 DHRS4-AS1Q9P1J3 65 aa7.16□□□□□ -1.26
HDAC9-228ENST00000524023 NBEAL1Q6ZS30 2694 aa7.16□□□□□ -1.26
HDAC9-228ENST00000524023 IGLV5-48A0A075B6I7 105 aa7.15□□□□□ -1.26
HDAC9-228ENST00000524023 PRYO14603 147 aa7.15□□□□□ -1.26
HDAC9-228ENST00000524023 Q9BRP9 147 aa7.15□□□□□ -1.26
HDAC9-228ENST00000524023 SPRR1AP35321 89 aa7.15□□□□□ -1.27
HDAC9-228ENST00000524023 NREPQ16612 68 aa7.15□□□□□ -1.27
HDAC9-228ENST00000524023 KRTAP7-1Q8IUC3 87 aa7.15□□□□□ -1.27
HDAC9-228ENST00000524023 OXTP01178 125 aa7.14□□□□□ -1.27
HDAC9-228ENST00000524023 KLKP1Q107X0 134 aa7.14□□□□□ -1.27
HDAC9-228ENST00000524023 ETDCA0A1B0GVM5 59 aa7.13□□□□□ -1.27
HDAC9-228ENST00000524023 C3orf84H3BNL1 204 aa7.13□□□□□ -1.27
HDAC9-228ENST00000524023 H7BZZ5 65 aa7.13□□□□□ -1.27
HDAC9-228ENST00000524023 BAHCC1Q9P281 2608 aa7.13□□□□□ -1.27
HDAC9-228ENST00000524023 Q8N9L7 120 aa7.13□□□□□ -1.27
HDAC9-228ENST00000524023 RMI2Q96E14 147 aa7.13□□□□□ -1.27
HDAC9-228ENST00000524023 TM2D3Q9BRN9 247 aa7.13□□□□□ -1.27
HDAC9-228ENST00000524023 PRB2P02812 416 aaPredicted RBP7.12□□□□□ -1.27
HDAC9-228ENST00000524023 IGKV4-1P06312 121 aa7.12□□□□□ -1.27
HDAC9-228ENST00000524023 DNAH10Q8IVF4 4471 aa7.12□□□□□ -1.27
HDAC9-228ENST00000524023 SNURFQ9Y675 71 aa7.12□□□□□ -1.27
HDAC9-228ENST00000524023 FAM236DA0A1B0GTK5 79 aa7.11□□□□□ -1.27
HDAC9-228ENST00000524023 FAM236CP0DP71 79 aa7.11□□□□□ -1.27
HDAC9-228ENST00000524023 BPY2O14599 106 aa7.1□□□□□ -1.27
HDAC9-228ENST00000524023 TNP2Q05952 138 aa7.1□□□□□ -1.27
HDAC9-228ENST00000524023 MRPL55Q7Z7F7 128 aaKnown RBP7.1□□□□□ -1.27
HDAC9-228ENST00000524023 ST20-AS1Q8NBB2 130 aa7.1□□□□□ -1.27
HDAC9-228ENST00000524023 COL6A5A8TX70 2615 aa7.1□□□□□ -1.27
HDAC9-228ENST00000524023 A0A1W2PNM2 257 aa7.09□□□□□ -1.27
HDAC9-228ENST00000524023 FUSP35637 526 aaKnown RBP eCLIP7.09□□□□□ -1.27
HDAC9-228ENST00000524023 LYSTQ99698 3801 aa7.09□□□□□ -1.27
HDAC9-228ENST00000524023 A0A1B0GW54 56 aa7.09□□□□□ -1.27
HDAC9-228ENST00000524023 C1orf137Q5JT78 98 aa7.09□□□□□ -1.27
HDAC9-228ENST00000524023 ERC2-IT1O76042 136 aa7.08□□□□□ -1.28
HDAC9-228ENST00000524023 K7EIL1 84 aa7.07□□□□□ -1.28
HDAC9-228ENST00000524023 DNAH9Q9NYC9 4486 aa7.07□□□□□ -1.28
HDAC9-228ENST00000524023 F8WEM9 126 aa7.06□□□□□ -1.28
HDAC9-228ENST00000524023 UBE2BP63146 152 aa7.06□□□□□ -1.28
HDAC9-228ENST00000524023 Q8NBF4 154 aa7.06□□□□□ -1.28
HDAC9-228ENST00000524023 REG3GQ6UW15 175 aa7.06□□□□□ -1.28
HDAC9-228ENST00000524023 NDUFC1O43677 76 aa7.05□□□□□ -1.28
HDAC9-228ENST00000524023 SPRR4Q96PI1 79 aa7.05□□□□□ -1.28
HDAC9-228ENST00000524023 OCR1Q9BZK8 76 aa7.05□□□□□ -1.28
HDAC9-228ENST00000524023 TMEM254Q8TBM7 123 aa7.05□□□□□ -1.28
HDAC9-228ENST00000524023 EPM2AB3EWF7 344 aa7.04□□□□□ -1.28
HDAC9-228ENST00000524023 SERP1Q9Y6X1 66 aa7.04□□□□□ -1.28
HDAC9-228ENST00000524023 SMIM29Q86T20 159 aa7.03□□□□□ -1.28
HDAC9-228ENST00000524023 COL7A1Q02388 2944 aa7.03□□□□□ -1.28
HDAC9-228ENST00000524023 Q5XG85 94 aa7.02□□□□□ -1.29
HDAC9-228ENST00000524023 KRTAP1-5Q9BYS1 174 aa7.02□□□□□ -1.29
HDAC9-228ENST00000524023 DYNC2H1Q8NCM8 4307 aaKnown RBP7.02□□□□□ -1.29
HDAC9-228ENST00000524023 A0A096LNI7 61 aa7.02□□□□□ -1.29
HDAC9-228ENST00000524023 STAB2Q8WWQ8 2551 aa7.01□□□□□ -1.29
HDAC9-228ENST00000524023 C16orf90A8MZG2 172 aa7.01□□□□□ -1.29
HDAC9-228ENST00000524023 CNBPP62633 177 aaKnown RBP7.01□□□□□ -1.29
HDAC9-228ENST00000524023 IGKV2-24A0A0C4DH68 120 aa7□□□□□ -1.29
HDAC9-228ENST00000524023 A0A0U1RQV1 116 aa7□□□□□ -1.29
HDAC9-228ENST00000524023 C4orf26Q17RF5 130 aa7□□□□□ -1.29
HDAC9-228ENST00000524023 LINC00476Q8WZB0 136 aa7□□□□□ -1.29
HDAC9-228ENST00000524023 MGAM2Q2M2H8 2515 aa7□□□□□ -1.29
HDAC9-228ENST00000524023 A0A1W2PNN7 141 aa6.99□□□□□ -1.29
HDAC9-228ENST00000524023 C5orf47Q569G3 176 aa6.99□□□□□ -1.29
HDAC9-228ENST00000524023 DSCR10P59022 87 aa6.99□□□□□ -1.29
HDAC9-228ENST00000524023 ATP5EP56381 51 aaPredicted RBP6.98□□□□□ -1.29
HDAC9-228ENST00000524023 PSCAO43653 123 aa6.98□□□□□ -1.29
HDAC9-228ENST00000524023 PRLHP81277 87 aa6.98□□□□□ -1.29
HDAC9-228ENST00000524023 DNAH7Q8WXX0 4024 aa6.97□□□□□ -1.29
HDAC9-228ENST00000524023 IGFL1Q6UW32 110 aa6.97□□□□□ -1.29
HDAC9-228ENST00000524023 FAM30AQ9NZY2 134 aa6.97□□□□□ -1.29
HDAC9-228ENST00000524023 A0A0G2JQZ4 141 aa6.96□□□□□ -1.29
HDAC9-228ENST00000524023 K7EQZ3 153 aa6.96□□□□□ -1.3
HDAC9-228ENST00000524023 HIGD2AQ9BW72 106 aa6.96□□□□□ -1.3
HDAC9-228ENST00000524023 TENM2Q9NT68 2774 aa6.95□□□□□ -1.3
HDAC9-228ENST00000524023 SRRM2Q9UQ35 2752 aaKnown RBP6.95□□□□□ -1.3
HDAC9-228ENST00000524023 IGLV8-61A0A075B6I0 122 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms