RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 C9orf163Q8N9P6 203 aa5.48□□□□□ -1.53
USP54-215ENST00000497106 FAM236DA0A1B0GTK5 79 aa5.48□□□□□ -1.53
USP54-215ENST00000497106 FAM236CP0DP71 79 aa5.48□□□□□ -1.53
USP54-215ENST00000497106 PRR3P79522 188 aaKnown RBP5.48□□□□□ -1.53
USP54-215ENST00000497106 LINC00575Q6W349 94 aa5.48□□□□□ -1.53
USP54-215ENST00000497106 LINC01600Q96MT4 127 aa5.47□□□□□ -1.53
USP54-215ENST00000497106 RBM3P98179 157 aaKnown RBP5.47□□□□□ -1.53
USP54-215ENST00000497106 LINC00336Q6ZUF6 198 aa5.47□□□□□ -1.53
USP54-215ENST00000497106 ELOF1P60002 83 aaKnown RBP5.46□□□□□ -1.54
USP54-215ENST00000497106 LINC00643Q86TS7 51 aa5.46□□□□□ -1.54
USP54-215ENST00000497106 RPL37AP8A6NKH3 93 aa5.45□□□□□ -1.54
USP54-215ENST00000497106 LINC00167Q96N53 147 aa5.45□□□□□ -1.54
USP54-215ENST00000497106 NIPBLQ6KC79 2804 aaeCLIP5.45□□□□□ -1.54
USP54-215ENST00000497106 Q6ZQY7 126 aa5.45□□□□□ -1.54
USP54-215ENST00000497106 KCNQ1DNQ9H478 68 aa5.45□□□□□ -1.54
USP54-215ENST00000497106 FUSP35637 526 aaKnown RBP eCLIP5.44□□□□□ -1.54
USP54-215ENST00000497106 NF1P21359 2839 aa5.44□□□□□ -1.54
USP54-215ENST00000497106 UBL5Q9BZL1 73 aa5.44□□□□□ -1.54
USP54-215ENST00000497106 A0A087WYN8 130 aa5.44□□□□□ -1.54
USP54-215ENST00000497106 A0A096LNI7 61 aa5.44□□□□□ -1.54
USP54-215ENST00000497106 TEX49A0A1B0GTD5 131 aa5.44□□□□□ -1.54
USP54-215ENST00000497106 C9orf129Q5T035 196 aaKnown RBP5.44□□□□□ -1.54
USP54-215ENST00000497106 DEFB105AQ8NG35 78 aa5.44□□□□□ -1.54
USP54-215ENST00000497106 HIGD2AQ9BW72 106 aa5.43□□□□□ -1.54
USP54-215ENST00000497106 EIF4EBP3O60516 100 aaPredicted RBP5.43□□□□□ -1.54
USP54-215ENST00000497106 IGLV1-50A0A075B6I6 118 aa5.43□□□□□ -1.54
USP54-215ENST00000497106 SERP1Q9Y6X1 66 aa5.43□□□□□ -1.54
USP54-215ENST00000497106 Q6ZR54 194 aa5.42□□□□□ -1.54
USP54-215ENST00000497106 KRTAP1-5Q9BYS1 174 aa5.42□□□□□ -1.54
USP54-215ENST00000497106 SERP2Q8N6R1 65 aa5.42□□□□□ -1.54
USP54-215ENST00000497106 CSMD2Q7Z408 3487 aa5.41□□□□□ -1.54
USP54-215ENST00000497106 SLPIP03973 132 aa5.41□□□□□ -1.54
USP54-215ENST00000497106 SERTAD4-AS1Q5TG53 156 aa5.41□□□□□ -1.54
USP54-215ENST00000497106 Q6ZRX8 168 aa5.41□□□□□ -1.54
USP54-215ENST00000497106 OXTP01178 125 aa5.41□□□□□ -1.54
USP54-215ENST00000497106 NOTCH1P46531 2555 aa5.4□□□□□ -1.54
USP54-215ENST00000497106 BRK1Q8WUW1 75 aa5.4□□□□□ -1.54
USP54-215ENST00000497106 CSMD1Q96PZ7 3565 aa5.4□□□□□ -1.54
USP54-215ENST00000497106 A0A0U1RQV1 116 aa5.4□□□□□ -1.55
USP54-215ENST00000497106 SMIM26A0A096LP01 95 aa5.4□□□□□ -1.55
USP54-215ENST00000497106 LRCOL1A6NCL2 159 aa5.4□□□□□ -1.55
USP54-215ENST00000497106 CELSR1Q9NYQ6 3014 aa5.39□□□□□ -1.55
USP54-215ENST00000497106 C14orf132Q9NPU4 83 aa5.39□□□□□ -1.55
USP54-215ENST00000497106 PMAIP1Q13794 54 aa5.39□□□□□ -1.55
USP54-215ENST00000497106 FAM218AQ96MZ4 157 aa5.39□□□□□ -1.55
USP54-215ENST00000497106 BCE1O60756 84 aa5.38□□□□□ -1.55
USP54-215ENST00000497106 LINC00528Q8N1L1 170 aa5.38□□□□□ -1.55
USP54-215ENST00000497106 CD164Q04900 197 aa5.38□□□□□ -1.55
USP54-215ENST00000497106 Q6JHZ5 121 aa5.38□□□□□ -1.55
USP54-215ENST00000497106 ATP5EP2Q5VTU8 51 aa5.38□□□□□ -1.55
USP54-215ENST00000497106 PHF5AQ7RTV0 110 aaKnown RBP5.37□□□□□ -1.55
USP54-215ENST00000497106 CDK2AP2O75956 126 aa5.37□□□□□ -1.55
USP54-215ENST00000497106 HIST1H4AP62805 103 aaKnown RBP5.37□□□□□ -1.55
USP54-215ENST00000497106 LCE6AA0A183 80 aa5.37□□□□□ -1.55
USP54-215ENST00000497106 A0A1B0GW54 56 aa5.37□□□□□ -1.55
USP54-215ENST00000497106 FAM168BA1KXE4 195 aa5.37□□□□□ -1.55
USP54-215ENST00000497106 SDIM1Q6ZPB5 146 aa5.37□□□□□ -1.55
USP54-215ENST00000497106 C1orf137Q5JT78 98 aa5.36□□□□□ -1.55
USP54-215ENST00000497106 Q6ZRN7 208 aaPredicted RBP5.36□□□□□ -1.55
USP54-215ENST00000497106 CCKP06307 115 aa5.36□□□□□ -1.55
USP54-215ENST00000497106 CHTF8P0CG12 524 aa5.36□□□□□ -1.55
USP54-215ENST00000497106 SMCR5Q8TEV8 140 aa5.36□□□□□ -1.55
USP54-215ENST00000497106 ZNF469Q96JG9 3925 aaPredicted RBP5.35□□□□□ -1.55
USP54-215ENST00000497106 H0Y9J4 135 aa5.35□□□□□ -1.55
USP54-215ENST00000497106 C4orf48Q5BLP8 95 aa5.35□□□□□ -1.55
USP54-215ENST00000497106 SPACA4Q8TDM5 124 aa5.35□□□□□ -1.55
USP54-215ENST00000497106 SVEP1Q4LDE5 3571 aa5.34□□□□□ -1.55
USP54-215ENST00000497106 TNP2Q05952 138 aa5.34□□□□□ -1.55
USP54-215ENST00000497106 NREPQ16612 68 aa5.34□□□□□ -1.55
USP54-215ENST00000497106 TENM1Q9UKZ4 2725 aa5.34□□□□□ -1.55
USP54-215ENST00000497106 A0A1W2PNN7 141 aa5.34□□□□□ -1.55
USP54-215ENST00000497106 PRLHP81277 87 aa5.33□□□□□ -1.56
USP54-215ENST00000497106 EPM2AB3EWF7 344 aa5.33□□□□□ -1.56
USP54-215ENST00000497106 LOC110117498A0A087WWA1 95 aa5.33□□□□□ -1.56
USP54-215ENST00000497106 SPRR1AP35321 89 aa5.32□□□□□ -1.56
USP54-215ENST00000497106 PLAC8Q9NZF1 115 aa5.32□□□□□ -1.56
USP54-215ENST00000497106 HAMPP81172 84 aa5.32□□□□□ -1.56
USP54-215ENST00000497106 Q9BRP9 147 aa5.32□□□□□ -1.56
USP54-215ENST00000497106 NBEAL2Q6ZNJ1 2754 aa5.32□□□□□ -1.56
USP54-215ENST00000497106 VPS13CQ709C8 3753 aa5.31□□□□□ -1.56
USP54-215ENST00000497106 ATP5EP56381 51 aaPredicted RBP5.31□□□□□ -1.56
USP54-215ENST00000497106 CYSTM1Q9H1C7 97 aa5.31□□□□□ -1.56
USP54-215ENST00000497106 FBN1P35555 2871 aaKnown RBP5.3□□□□□ -1.56
USP54-215ENST00000497106 Q8NDZ9 215 aa5.3□□□□□ -1.56
USP54-215ENST00000497106 RPL37AP61513 92 aaKnown RBP5.29□□□□□ -1.56
USP54-215ENST00000497106 ZNF861PO60384 105 aa5.28□□□□□ -1.56
USP54-215ENST00000497106 NDUFB1O75438 58 aa5.28□□□□□ -1.56
USP54-215ENST00000497106 PRR15Q8IV56 129 aa5.28□□□□□ -1.56
USP54-215ENST00000497106 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.27□□□□□ -1.57
USP54-215ENST00000497106 BPY2O14599 106 aa5.27□□□□□ -1.57
USP54-215ENST00000497106 Q6ZQT0 140 aa5.27□□□□□ -1.57
USP54-215ENST00000497106 IGLV5-48A0A075B6I7 105 aa5.26□□□□□ -1.57
USP54-215ENST00000497106 Q8NBF4 154 aa5.26□□□□□ -1.57
USP54-215ENST00000497106 OBSCN-AS1Q96MR7 158 aa5.26□□□□□ -1.57
USP54-215ENST00000497106 IGLV7-43P04211 117 aa5.25□□□□□ -1.57
USP54-215ENST00000497106 PSORS1C2Q9UIG4 136 aa5.25□□□□□ -1.57
USP54-215ENST00000497106 IGLV9-49A0A0B4J1Y8 123 aa5.25□□□□□ -1.57
USP54-215ENST00000497106 FP248Q71RG6 208 aaPredicted RBP5.24□□□□□ -1.57
USP54-215ENST00000497106 ST20-AS1Q8NBB2 130 aa5.24□□□□□ -1.57
USP54-215ENST00000497106 Q8N377 158 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms