RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 Q8NBF4 154 aa9.04□□□□□ -0.96
HDAC4-213ENST00000496347 LITAFQ99732 161 aa9.04□□□□□ -0.96
HDAC4-213ENST00000496347 Q9BRP9 147 aa9.04□□□□□ -0.96
HDAC4-213ENST00000496347 SPANXCQ9NY87 97 aa9.04□□□□□ -0.96
HDAC4-213ENST00000496347 ZNF73O43830 326 aaPredicted RBP9.03□□□□□ -0.96
HDAC4-213ENST00000496347 EIF4EBP3O60516 100 aaPredicted RBP9.03□□□□□ -0.96
HDAC4-213ENST00000496347 NPC2P61916 151 aa9.03□□□□□ -0.96
HDAC4-213ENST00000496347 C4orf48Q5BLP8 95 aa9.03□□□□□ -0.96
HDAC4-213ENST00000496347 PPDPFQ9H3Y8 114 aa9.03□□□□□ -0.96
HDAC4-213ENST00000496347 ZNF815PA8K554 130 aa9.02□□□□□ -0.97
HDAC4-213ENST00000496347 C3orf79P0CE67 100 aa9.02□□□□□ -0.97
HDAC4-213ENST00000496347 GAGE2AQ6NT46 116 aa9.02□□□□□ -0.97
HDAC4-213ENST00000496347 IGLV7-46A0A075B6I9 117 aa9.01□□□□□ -0.97
HDAC4-213ENST00000496347 ERC2-IT1O76042 136 aa9.01□□□□□ -0.97
HDAC4-213ENST00000496347 LINC00308Q8TCZ7 52 aa9.01□□□□□ -0.97
HDAC4-213ENST00000496347 C20orf202A1L168 122 aa9□□□□□ -0.97
HDAC4-213ENST00000496347 FP248Q71RG6 208 aaPredicted RBP9□□□□□ -0.97
HDAC4-213ENST00000496347 SPINK1P00995 79 aa8.99□□□□□ -0.97
HDAC4-213ENST00000496347 KRTDAPP60985 99 aa8.99□□□□□ -0.97
HDAC4-213ENST00000496347 SPANXDQ9BXN6 97 aa8.99□□□□□ -0.97
HDAC4-213ENST00000496347 C5orf52A6NGY3 159 aa8.98□□□□□ -0.97
HDAC4-213ENST00000496347 HINT1P49773 126 aaPredicted RBP8.98□□□□□ -0.97
HDAC4-213ENST00000496347 MOBPQ13875 183 aa8.98□□□□□ -0.97
HDAC4-213ENST00000496347 AKR1D1P51857 326 aa8.97□□□□□ -0.97
HDAC4-213ENST00000496347 RPS29P62273 56 aaKnown RBP8.97□□□□□ -0.97
HDAC4-213ENST00000496347 CDIP1Q9H305 208 aa8.97□□□□□ -0.97
HDAC4-213ENST00000496347 IGLV9-49A0A0B4J1Y8 123 aa8.96□□□□□ -0.98
HDAC4-213ENST00000496347 A0A0U1RQV1 116 aa8.96□□□□□ -0.98
HDAC4-213ENST00000496347 SSBP3-AS1Q7Z2R9 100 aa8.95□□□□□ -0.98
HDAC4-213ENST00000496347 COPS9Q8WXC6 57 aa8.95□□□□□ -0.98
HDAC4-213ENST00000496347 TTTY13Q9BZ97 58 aa8.95□□□□□ -0.98
HDAC4-213ENST00000496347 SCGB1D4Q6XE38 83 aa8.94□□□□□ -0.98
HDAC4-213ENST00000496347 LINC00518Q8N0U6 118 aa8.94□□□□□ -0.98
HDAC4-213ENST00000496347 OR13C6PQ8NH95 151 aa8.94□□□□□ -0.98
HDAC4-213ENST00000496347 DHRS4-AS1Q9P1J3 65 aa8.93□□□□□ -0.98
HDAC4-213ENST00000496347 ANKRD39Q53RE8 183 aa8.91□□□□□ -0.98
HDAC4-213ENST00000496347 C9orf153Q5TBE3 101 aa8.91□□□□□ -0.98
HDAC4-213ENST00000496347 Q6ZVH6 145 aa8.91□□□□□ -0.98
HDAC4-213ENST00000496347 IFITM1P13164 125 aa8.9□□□□□ -0.98
HDAC4-213ENST00000496347 ELOF1P60002 83 aaKnown RBP8.9□□□□□ -0.98
HDAC4-213ENST00000496347 SLC25A34Q6PIV7 304 aa8.9□□□□□ -0.98
HDAC4-213ENST00000496347 ST20-AS1Q8NBB2 130 aa8.9□□□□□ -0.98
HDAC4-213ENST00000496347 SPRR1BP22528 89 aa8.89□□□□□ -0.99
HDAC4-213ENST00000496347 MUC17Q685J3 4493 aa8.89□□□□□ -0.99
HDAC4-213ENST00000496347 SNRPEP62304 92 aaKnown RBP8.88□□□□□ -0.99
HDAC4-213ENST00000496347 KRTAP13-3Q3SY46 172 aa8.88□□□□□ -0.99
HDAC4-213ENST00000496347 C6orf99Q4VX62 202 aa8.88□□□□□ -0.99
HDAC4-213ENST00000496347 ATOH7Q8N100 152 aa8.88□□□□□ -0.99
HDAC4-213ENST00000496347 Q8N377 158 aa8.88□□□□□ -0.99
HDAC4-213ENST00000496347 TRBV7-6A0A0J9YX20 115 aa8.87□□□□□ -0.99
HDAC4-213ENST00000496347 SLC25A20O43772 301 aa8.87□□□□□ -0.99
HDAC4-213ENST00000496347 COX7BP24311 80 aa8.87□□□□□ -0.99
HDAC4-213ENST00000496347 PCP2Q8IVA1 136 aa8.86□□□□□ -0.99
HDAC4-213ENST00000496347 S100A2P29034 98 aa8.84□□□□□ -0.99
HDAC4-213ENST00000496347 A0A1B0GWB2 263 aa8.83□□□□□ -1
HDAC4-213ENST00000496347 HIST3H2BBQ8N257 126 aa8.83□□□□□ -1
HDAC4-213ENST00000496347 HIST1H2BLQ99880 126 aa8.83□□□□□ -1
HDAC4-213ENST00000496347 LAMTOR3Q9UHA4 124 aa8.83□□□□□ -1
HDAC4-213ENST00000496347 S100A1P23297 94 aa8.82□□□□□ -1
HDAC4-213ENST00000496347 FAT4Q6V0I7 4981 aa8.81□□□□□ -1
HDAC4-213ENST00000496347 A6NDN8 102 aa8.81□□□□□ -1
HDAC4-213ENST00000496347 LIMD2Q9BT23 127 aa8.81□□□□□ -1
HDAC4-213ENST00000496347 TRAV13-2A0A0B4J235 113 aa8.8□□□□□ -1
HDAC4-213ENST00000496347 A4D1N5 150 aa8.8□□□□□ -1
HDAC4-213ENST00000496347 HSBP1L1C9JCN9 74 aa8.8□□□□□ -1
HDAC4-213ENST00000496347 MUSTN1Q8IVN3 82 aa8.8□□□□□ -1
HDAC4-213ENST00000496347 TEX49A0A1B0GTD5 131 aa8.78□□□□□ -1
HDAC4-213ENST00000496347 IGLV5-48A0A075B6I7 105 aa8.77□□□□□ -1.01
HDAC4-213ENST00000496347 S100A6P06703 90 aa8.77□□□□□ -1.01
HDAC4-213ENST00000496347 TAL2Q16559 108 aa8.77□□□□□ -1.01
HDAC4-213ENST00000496347 ASB16-AS1Q495Z4 193 aa8.77□□□□□ -1.01
HDAC4-213ENST00000496347 NHP2Q9NX24 153 aaKnown RBP8.77□□□□□ -1.01
HDAC4-213ENST00000496347 CD164Q04900 197 aa8.76□□□□□ -1.01
HDAC4-213ENST00000496347 Q1RN00 199 aa8.75□□□□□ -1.01
HDAC4-213ENST00000496347 SEC61BP60468 96 aaKnown RBP8.74□□□□□ -1.01
HDAC4-213ENST00000496347 DEFB105AQ8NG35 78 aa8.74□□□□□ -1.01
HDAC4-213ENST00000496347 SMIM11BQ8TCY0 68 aa8.74□□□□□ -1.01
HDAC4-213ENST00000496347 PRO1933Q9H354 126 aa8.74□□□□□ -1.01
HDAC4-213ENST00000496347 LINC01547P58512 204 aaPredicted RBP8.72□□□□□ -1.01
HDAC4-213ENST00000496347 XP32Q5T750 250 aa8.72□□□□□ -1.01
HDAC4-213ENST00000496347 LCE2AQ5TA79 106 aaPredicted RBP8.71□□□□□ -1.02
HDAC4-213ENST00000496347 HRCT1Q6UXD1 115 aa8.71□□□□□ -1.02
HDAC4-213ENST00000496347 SMIM29Q86T20 159 aa8.71□□□□□ -1.02
HDAC4-213ENST00000496347 H7C2G1 150 aa8.69□□□□□ -1.02
HDAC4-213ENST00000496347 VAMP3Q15836 100 aa8.69□□□□□ -1.02
HDAC4-213ENST00000496347 Q5XG85 94 aa8.69□□□□□ -1.02
HDAC4-213ENST00000496347 SCGB1D1O95968 90 aa8.66□□□□□ -1.02
HDAC4-213ENST00000496347 F8WEM9 126 aa8.65□□□□□ -1.02
HDAC4-213ENST00000496347 COX8AP10176 69 aa8.65□□□□□ -1.02
HDAC4-213ENST00000496347 LINC00575Q6W349 94 aa8.65□□□□□ -1.02
HDAC4-213ENST00000496347 HIST1H4GQ99525 98 aa8.64□□□□□ -1.03
HDAC4-213ENST00000496347 DLEU1O43261 78 aa8.63□□□□□ -1.03
HDAC4-213ENST00000496347 hADV29S1A0JD25 119 aa8.62□□□□□ -1.03
HDAC4-213ENST00000496347 Q6ZQY7 126 aa8.62□□□□□ -1.03
HDAC4-213ENST00000496347 BVES-AS1Q5T3Y7 98 aa8.61□□□□□ -1.03
HDAC4-213ENST00000496347 C12orf57Q99622 126 aa8.61□□□□□ -1.03
HDAC4-213ENST00000496347 KRTAP4-1Q9BYQ7 146 aa8.6□□□□□ -1.03
HDAC4-213ENST00000496347 PPDPFLQ8WWR9 84 aa8.59□□□□□ -1.03
HDAC4-213ENST00000496347 A0A0G2JQZ4 141 aa8.58□□□□□ -1.04
HDAC4-213ENST00000496347 TCL1BO95988 128 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms