RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 PET117Q6UWS5 81 aa11.12□□□□□ -0.63
USP40-217ENST00000496298 ERC2-IT1O76042 136 aa11.11□□□□□ -0.63
USP40-217ENST00000496298 S100A7L2Q5SY68 101 aa11.11□□□□□ -0.63
USP40-217ENST00000496298 Q6ZRX8 168 aa11.11□□□□□ -0.63
USP40-217ENST00000496298 Q9BRP9 147 aa11.11□□□□□ -0.63
USP40-217ENST00000496298 TPRXLQ17RH7 258 aa11.1□□□□□ -0.63
USP40-217ENST00000496298 COA6Q5JTJ3 125 aaKnown RBP11.1□□□□□ -0.63
USP40-217ENST00000496298 LITAFQ99732 161 aa11.1□□□□□ -0.63
USP40-217ENST00000496298 PPDPFQ9H3Y8 114 aa11.1□□□□□ -0.63
USP40-217ENST00000496298 A6NJY4 79 aa11.09□□□□□ -0.63
USP40-217ENST00000496298 TIMM17BO60830 172 aa11.09□□□□□ -0.63
USP40-217ENST00000496298 S100A6P06703 90 aa11.09□□□□□ -0.63
USP40-217ENST00000496298 IGLV7-46A0A075B6I9 117 aa11.08□□□□□ -0.64
USP40-217ENST00000496298 Q8NBF4 154 aa11.08□□□□□ -0.64
USP40-217ENST00000496298 TRAV23DV6A0A075B6W5 121 aa11.07□□□□□ -0.64
USP40-217ENST00000496298 NPC2P61916 151 aa11.07□□□□□ -0.64
USP40-217ENST00000496298 GAGE2AQ6NT46 116 aa11.07□□□□□ -0.64
USP40-217ENST00000496298 LOC105371267A0A1B0GV96 52 aa11.06□□□□□ -0.64
USP40-217ENST00000496298 C3orf79P0CE67 100 aa11.06□□□□□ -0.64
USP40-217ENST00000496298 LINC00308Q8TCZ7 52 aa11.06□□□□□ -0.64
USP40-217ENST00000496298 ZNF73O43830 326 aaPredicted RBP11.05□□□□□ -0.64
USP40-217ENST00000496298 JOSD1Q15040 202 aaPredicted RBP11.05□□□□□ -0.64
USP40-217ENST00000496298 SPINK1P00995 79 aa11.04□□□□□ -0.64
USP40-217ENST00000496298 SSBP3-AS1Q7Z2R9 100 aa11.04□□□□□ -0.64
USP40-217ENST00000496298 SPANXCQ9NY87 97 aa11.04□□□□□ -0.64
USP40-217ENST00000496298 CBY1Q9Y3M2 126 aa11.04□□□□□ -0.64
USP40-217ENST00000496298 FP248Q71RG6 208 aaPredicted RBP11.03□□□□□ -0.64
USP40-217ENST00000496298 ZNF815PA8K554 130 aa11.02□□□□□ -0.65
USP40-217ENST00000496298 LCE2AQ5TA79 106 aaPredicted RBP11.02□□□□□ -0.65
USP40-217ENST00000496298 LCE2CQ5TA81 110 aa11.02□□□□□ -0.65
USP40-217ENST00000496298 C5orf52A6NGY3 159 aa11.01□□□□□ -0.65
USP40-217ENST00000496298 CDIP1Q9H305 208 aa11.01□□□□□ -0.65
USP40-217ENST00000496298 TTTY13Q9BZ97 58 aa11□□□□□ -0.65
USP40-217ENST00000496298 RPS29P62273 56 aaKnown RBP10.99□□□□□ -0.65
USP40-217ENST00000496298 MOBPQ13875 183 aa10.99□□□□□ -0.65
USP40-217ENST00000496298 MUC17Q685J3 4493 aa10.99□□□□□ -0.65
USP40-217ENST00000496298 IGLV9-49A0A0B4J1Y8 123 aa10.98□□□□□ -0.65
USP40-217ENST00000496298 KRTDAPP60985 99 aa10.98□□□□□ -0.65
USP40-217ENST00000496298 SNRPEP62304 92 aaKnown RBP10.98□□□□□ -0.65
USP40-217ENST00000496298 HINT1P49773 126 aaPredicted RBP10.97□□□□□ -0.65
USP40-217ENST00000496298 SPANXDQ9BXN6 97 aa10.97□□□□□ -0.65
USP40-217ENST00000496298 LINC00518Q8N0U6 118 aa10.96□□□□□ -0.65
USP40-217ENST00000496298 OR13C6PQ8NH95 151 aa10.95□□□□□ -0.66
USP40-217ENST00000496298 A0A0U1RQV1 116 aa10.94□□□□□ -0.66
USP40-217ENST00000496298 C20orf202A1L168 122 aa10.94□□□□□ -0.66
USP40-217ENST00000496298 ST20-AS1Q8NBB2 130 aa10.94□□□□□ -0.66
USP40-217ENST00000496298 SPRR1BP22528 89 aa10.93□□□□□ -0.66
USP40-217ENST00000496298 KRTAP13-3Q3SY46 172 aa10.93□□□□□ -0.66
USP40-217ENST00000496298 ANKRD39Q53RE8 183 aa10.93□□□□□ -0.66
USP40-217ENST00000496298 Q8N377 158 aa10.92□□□□□ -0.66
USP40-217ENST00000496298 DHRS4-AS1Q9P1J3 65 aa10.92□□□□□ -0.66
USP40-217ENST00000496298 S100A2P29034 98 aa10.91□□□□□ -0.66
USP40-217ENST00000496298 AKR1D1P51857 326 aa10.91□□□□□ -0.66
USP40-217ENST00000496298 SCGB1D4Q6XE38 83 aa10.9□□□□□ -0.66
USP40-217ENST00000496298 IFITM1P13164 125 aa10.89□□□□□ -0.67
USP40-217ENST00000496298 ELOF1P60002 83 aaKnown RBP10.89□□□□□ -0.67
USP40-217ENST00000496298 Q6ZVH6 145 aa10.89□□□□□ -0.67
USP40-217ENST00000496298 SLC25A20O43772 301 aa10.88□□□□□ -0.67
USP40-217ENST00000496298 COPS9Q8WXC6 57 aa10.88□□□□□ -0.67
USP40-217ENST00000496298 FAT4Q6V0I7 4981 aa10.87□□□□□ -0.67
USP40-217ENST00000496298 TRBV7-6A0A0J9YX20 115 aa10.87□□□□□ -0.67
USP40-217ENST00000496298 COX7BP24311 80 aa10.87□□□□□ -0.67
USP40-217ENST00000496298 C6orf99Q4VX62 202 aa10.87□□□□□ -0.67
USP40-217ENST00000496298 C9orf153Q5TBE3 101 aa10.87□□□□□ -0.67
USP40-217ENST00000496298 ATOH7Q8N100 152 aa10.87□□□□□ -0.67
USP40-217ENST00000496298 HIST3H2BBQ8N257 126 aa10.87□□□□□ -0.67
USP40-217ENST00000496298 PCP2Q8IVA1 136 aa10.86□□□□□ -0.67
USP40-217ENST00000496298 SLC25A34Q6PIV7 304 aa10.85□□□□□ -0.67
USP40-217ENST00000496298 SMIM6P0DI80 62 aa10.83□□□□□ -0.68
USP40-217ENST00000496298 MUSTN1Q8IVN3 82 aa10.83□□□□□ -0.68
USP40-217ENST00000496298 ASB16-AS1Q495Z4 193 aa10.81□□□□□ -0.68
USP40-217ENST00000496298 HIST1H2BLQ99880 126 aa10.81□□□□□ -0.68
USP40-217ENST00000496298 LAMTOR3Q9UHA4 124 aa10.81□□□□□ -0.68
USP40-217ENST00000496298 A0A1B0GWB2 263 aa10.79□□□□□ -0.68
USP40-217ENST00000496298 A6NDN8 102 aa10.78□□□□□ -0.68
USP40-217ENST00000496298 TAL2Q16559 108 aa10.78□□□□□ -0.68
USP40-217ENST00000496298 TEX49A0A1B0GTD5 131 aa10.77□□□□□ -0.69
USP40-217ENST00000496298 IGLV5-48A0A075B6I7 105 aa10.75□□□□□ -0.69
USP40-217ENST00000496298 TRAV13-2A0A0B4J235 113 aa10.75□□□□□ -0.69
USP40-217ENST00000496298 A4D1N5 150 aa10.75□□□□□ -0.69
USP40-217ENST00000496298 LINC01547P58512 204 aaPredicted RBP10.75□□□□□ -0.69
USP40-217ENST00000496298 CD164Q04900 197 aa10.74□□□□□ -0.69
USP40-217ENST00000496298 SMIM29Q86T20 159 aa10.74□□□□□ -0.69
USP40-217ENST00000496298 DEFB105AQ8NG35 78 aa10.74□□□□□ -0.69
USP40-217ENST00000496298 C12orf57Q99622 126 aa10.74□□□□□ -0.69
USP40-217ENST00000496298 LIMD2Q9BT23 127 aa10.74□□□□□ -0.69
USP40-217ENST00000496298 SEC61BP60468 96 aaKnown RBP10.73□□□□□ -0.69
USP40-217ENST00000496298 XP32Q5T750 250 aa10.73□□□□□ -0.69
USP40-217ENST00000496298 LORP23490 312 aaPredicted RBP10.72□□□□□ -0.69
USP40-217ENST00000496298 Q1RN00 199 aa10.72□□□□□ -0.69
USP40-217ENST00000496298 SMIM11BQ8TCY0 68 aa10.72□□□□□ -0.69
USP40-217ENST00000496298 PRO1933Q9H354 126 aa10.72□□□□□ -0.69
USP40-217ENST00000496298 HRCT1Q6UXD1 115 aa10.7□□□□□ -0.7
USP40-217ENST00000496298 HSBP1L1C9JCN9 74 aa10.69□□□□□ -0.7
USP40-217ENST00000496298 PYY3Q5JQD4 70 aa10.68□□□□□ -0.7
USP40-217ENST00000496298 KRTAP4-1Q9BYQ7 146 aa10.68□□□□□ -0.7
USP40-217ENST00000496298 NHP2Q9NX24 153 aaKnown RBP10.68□□□□□ -0.7
USP40-217ENST00000496298 LOC100996750A0A140TA64 210 aa10.67□□□□□ -0.7
USP40-217ENST00000496298 Q5XG85 94 aa10.67□□□□□ -0.7
USP40-217ENST00000496298 KRTAP4-6Q9BYQ5 205 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms