RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 C14orf132Q9NPU4 83 aa6.96□□□□□ -1.3
USP4-214ENST00000491791 CNBPP62633 177 aaKnown RBP6.95□□□□□ -1.3
USP4-214ENST00000491791 SMCR5Q8TEV8 140 aa6.95□□□□□ -1.3
USP4-214ENST00000491791 LOC107984640A0A0U1RRK4 108 aa6.94□□□□□ -1.3
USP4-214ENST00000491791 SPRR1AP35321 89 aa6.94□□□□□ -1.3
USP4-214ENST00000491791 GAGE2AQ6NT46 116 aa6.94□□□□□ -1.3
USP4-214ENST00000491791 C7orf33Q8WU49 177 aa6.94□□□□□ -1.3
USP4-214ENST00000491791 NUPR2A6NF83 97 aa6.93□□□□□ -1.3
USP4-214ENST00000491791 KRTAP4-16G5E9R7 235 aaPredicted RBP6.93□□□□□ -1.3
USP4-214ENST00000491791 PRYO14603 147 aa6.93□□□□□ -1.3
USP4-214ENST00000491791 LY6G6CO95867 125 aa6.93□□□□□ -1.3
USP4-214ENST00000491791 TTC32Q5I0X7 151 aa6.93□□□□□ -1.3
USP4-214ENST00000491791 Q6ZQY7 126 aa6.93□□□□□ -1.3
USP4-214ENST00000491791 LINC00476Q8WZB0 136 aa6.93□□□□□ -1.3
USP4-214ENST00000491791 KRTAP1-5Q9BYS1 174 aa6.93□□□□□ -1.3
USP4-214ENST00000491791 IGLV1-50A0A075B6I6 118 aa6.92□□□□□ -1.3
USP4-214ENST00000491791 A0A1B0GV72 72 aa6.92□□□□□ -1.3
USP4-214ENST00000491791 RBM3P98179 157 aaKnown RBP6.92□□□□□ -1.3
USP4-214ENST00000491791 C14orf177Q52M58 125 aa6.92□□□□□ -1.3
USP4-214ENST00000491791 SERTAD4-AS1Q5TG53 156 aa6.92□□□□□ -1.3
USP4-214ENST00000491791 Q6JHZ5 121 aa6.92□□□□□ -1.3
USP4-214ENST00000491791 NKAPP1Q8N9T2 125 aa6.92□□□□□ -1.3
USP4-214ENST00000491791 Q6ZQT0 140 aa6.91□□□□□ -1.3
USP4-214ENST00000491791 NDUFV3P56181 108 aaKnown RBP6.9□□□□□ -1.3
USP4-214ENST00000491791 KRTAP7-1Q8IUC3 87 aa6.9□□□□□ -1.3
USP4-214ENST00000491791 LINC00846Q9NV44 126 aa6.9□□□□□ -1.3
USP4-214ENST00000491791 HYDINQ4G0P3 5121 aa6.89□□□□□ -1.31
USP4-214ENST00000491791 TRBV7-4A0A0J9YYF1 115 aa6.89□□□□□ -1.31
USP4-214ENST00000491791 C16orf90A8MZG2 172 aa6.89□□□□□ -1.31
USP4-214ENST00000491791 ATP5EP2Q5VTU8 51 aa6.89□□□□□ -1.31
USP4-214ENST00000491791 DHRS4-AS1Q9P1J3 65 aa6.89□□□□□ -1.31
USP4-214ENST00000491791 PKIGQ9Y2B9 76 aa6.89□□□□□ -1.31
USP4-214ENST00000491791 PLECQ15149 4684 aaKnown RBP6.88□□□□□ -1.31
USP4-214ENST00000491791 ALMS1Q8TCU4 4167 aa6.88□□□□□ -1.31
USP4-214ENST00000491791 UBE2DNLQ8IWF7 75 aa6.88□□□□□ -1.31
USP4-214ENST00000491791 B5MCH6 92 aa6.87□□□□□ -1.31
USP4-214ENST00000491791 Q6ZRX8 168 aa6.87□□□□□ -1.31
USP4-214ENST00000491791 NBDYA0A0U1RRE5 68 aa6.86□□□□□ -1.31
USP4-214ENST00000491791 HIST1H4AP62805 103 aaKnown RBP6.86□□□□□ -1.31
USP4-214ENST00000491791 MRPL55Q7Z7F7 128 aaKnown RBP6.86□□□□□ -1.31
USP4-214ENST00000491791 DSCR8Q96T75 97 aa6.86□□□□□ -1.31
USP4-214ENST00000491791 LAMTOR3Q9UHA4 124 aa6.86□□□□□ -1.31
USP4-214ENST00000491791 A0A1B0GW54 56 aa6.85□□□□□ -1.31
USP4-214ENST00000491791 LRCOL1A6NCL2 159 aa6.85□□□□□ -1.31
USP4-214ENST00000491791 Q6ZRN7 208 aaPredicted RBP6.85□□□□□ -1.31
USP4-214ENST00000491791 ANAPC13Q9BS18 74 aa6.85□□□□□ -1.31
USP4-214ENST00000491791 IGLV5-48A0A075B6I7 105 aa6.84□□□□□ -1.31
USP4-214ENST00000491791 FAM168BA1KXE4 195 aa6.84□□□□□ -1.31
USP4-214ENST00000491791 LINC01547P58512 204 aaPredicted RBP6.84□□□□□ -1.31
USP4-214ENST00000491791 KRTAP17-1Q9BYP8 105 aa6.84□□□□□ -1.31
USP4-214ENST00000491791 C9orf163Q8N9P6 203 aa6.83□□□□□ -1.32
USP4-214ENST00000491791 FRAS1Q86XX4 4008 aa6.82□□□□□ -1.32
USP4-214ENST00000491791 EPM2AB3EWF7 344 aa6.82□□□□□ -1.32
USP4-214ENST00000491791 PSCAO43653 123 aa6.82□□□□□ -1.32
USP4-214ENST00000491791 UBL5Q9BZL1 73 aa6.82□□□□□ -1.32
USP4-214ENST00000491791 A0A096LNI7 61 aa6.81□□□□□ -1.32
USP4-214ENST00000491791 ETDCA0A1B0GVM5 59 aa6.81□□□□□ -1.32
USP4-214ENST00000491791 Q8N377 158 aa6.81□□□□□ -1.32
USP4-214ENST00000491791 Q9BRP9 147 aa6.81□□□□□ -1.32
USP4-214ENST00000491791 TNP2Q05952 138 aa6.8□□□□□ -1.32
USP4-214ENST00000491791 REG3GQ6UW15 175 aa6.8□□□□□ -1.32
USP4-214ENST00000491791 LINC00474Q9P2X8 69 aa6.8□□□□□ -1.32
USP4-214ENST00000491791 KMT2AQ03164 3969 aa6.79□□□□□ -1.32
USP4-214ENST00000491791 FAM236AA0A1B0GUQ0 79 aa6.79□□□□□ -1.32
USP4-214ENST00000491791 FAM236BA0A1B0GV22 79 aa6.79□□□□□ -1.32
USP4-214ENST00000491791 A0A1W2PNN7 141 aa6.79□□□□□ -1.32
USP4-214ENST00000491791 RPL37AP8A6NKH3 93 aa6.79□□□□□ -1.32
USP4-214ENST00000491791 H0Y9J4 135 aa6.79□□□□□ -1.32
USP4-214ENST00000491791 CXCL6P80162 114 aa6.79□□□□□ -1.32
USP4-214ENST00000491791 FAM19A5Q7Z5A7 132 aaPredicted RBP6.79□□□□□ -1.32
USP4-214ENST00000491791 VPS13DQ5THJ4 4388 aa6.78□□□□□ -1.32
USP4-214ENST00000491791 M0R2N4 97 aa6.77□□□□□ -1.33
USP4-214ENST00000491791 ATOX1O00244 68 aa6.77□□□□□ -1.33
USP4-214ENST00000491791 BCE1O60756 84 aa6.77□□□□□ -1.33
USP4-214ENST00000491791 Q6ZR54 194 aa6.77□□□□□ -1.33
USP4-214ENST00000491791 IGKV3D-7A0A0C4DH55 119 aa6.76□□□□□ -1.33
USP4-214ENST00000491791 Q6ZVQ6 151 aa6.76□□□□□ -1.33
USP4-214ENST00000491791 IGLV8-61A0A075B6I0 122 aa6.74□□□□□ -1.33
USP4-214ENST00000491791 HERC2O95714 4834 aa6.73□□□□□ -1.33
USP4-214ENST00000491791 ERC2-IT1O76042 136 aa6.73□□□□□ -1.33
USP4-214ENST00000491791 SPRR1BP22528 89 aa6.73□□□□□ -1.33
USP4-214ENST00000491791 LINC00336Q6ZUF6 198 aa6.73□□□□□ -1.33
USP4-214ENST00000491791 SMIM29Q86T20 159 aa6.73□□□□□ -1.33
USP4-214ENST00000491791 HECTD4Q9Y4D8 3996 aa6.73□□□□□ -1.33
USP4-214ENST00000491791 A0A087WTM6 91 aa6.72□□□□□ -1.33
USP4-214ENST00000491791 IGKV2-24A0A0C4DH68 120 aa6.72□□□□□ -1.33
USP4-214ENST00000491791 UQCRQO14949 82 aa6.72□□□□□ -1.33
USP4-214ENST00000491791 SPRR4Q96PI1 79 aa6.72□□□□□ -1.33
USP4-214ENST00000491791 DNAH10Q8IVF4 4471 aa6.71□□□□□ -1.33
USP4-214ENST00000491791 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.71□□□□□ -1.34
USP4-214ENST00000491791 CCDC179H3BU77 68 aa6.71□□□□□ -1.34
USP4-214ENST00000491791 UBE2BP63146 152 aa6.71□□□□□ -1.34
USP4-214ENST00000491791 C3orf22Q8N5N4 141 aa6.71□□□□□ -1.34
USP4-214ENST00000491791 COX7CP15954 63 aa6.7□□□□□ -1.34
USP4-214ENST00000491791 ST20-AS1Q8NBB2 130 aa6.7□□□□□ -1.34
USP4-214ENST00000491791 Q8NBF4 154 aa6.7□□□□□ -1.34
USP4-214ENST00000491791 DEFB105AQ8NG35 78 aa6.7□□□□□ -1.34
USP4-214ENST00000491791 A0A1W2PNM2 257 aa6.69□□□□□ -1.34
USP4-214ENST00000491791 FUSP35637 526 aaKnown RBP eCLIP6.69□□□□□ -1.34
USP4-214ENST00000491791 C1orf137Q5JT78 98 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms