RNA–Protein interactions for RNA: ENST00000488279.6

PTPN4-211, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 5

Gene PTPN4, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-211ENST00000488279 ZNF73O43830 326 aaPredicted RBP12.75□□□□□ -0.37
PTPN4-211ENST00000488279 EIF4EBP3O60516 100 aaPredicted RBP12.75□□□□□ -0.37
PTPN4-211ENST00000488279 KRTAP13-3Q3SY46 172 aa12.75□□□□□ -0.37
PTPN4-211ENST00000488279 RPS29P62273 56 aaKnown RBP12.74□□□□□ -0.37
PTPN4-211ENST00000488279 CBY1Q9Y3M2 126 aa12.74□□□□□ -0.37
PTPN4-211ENST00000488279 SYS1-DBNDD2H3BUS1 97 aa12.73□□□□□ -0.37
PTPN4-211ENST00000488279 LCE2AQ5TA79 106 aaPredicted RBP12.73□□□□□ -0.37
PTPN4-211ENST00000488279 HINT1P49773 126 aaPredicted RBP12.72□□□□□ -0.37
PTPN4-211ENST00000488279 Q8N377 158 aa12.71□□□□□ -0.37
PTPN4-211ENST00000488279 SLC25A20O43772 301 aa12.69□□□□□ -0.38
PTPN4-211ENST00000488279 C5orf52A6NGY3 159 aa12.68□□□□□ -0.38
PTPN4-211ENST00000488279 HIST1H2BKO60814 126 aa12.68□□□□□ -0.38
PTPN4-211ENST00000488279 HIST1H2BJP06899 126 aa12.68□□□□□ -0.38
PTPN4-211ENST00000488279 HIST1H2BOP23527 126 aa12.68□□□□□ -0.38
PTPN4-211ENST00000488279 HIST1H2BBP33778 126 aa12.68□□□□□ -0.38
PTPN4-211ENST00000488279 HIST1H2BDP58876 126 aa12.68□□□□□ -0.38
PTPN4-211ENST00000488279 HIST1H2BCP62807 126 aa12.68□□□□□ -0.38
PTPN4-211ENST00000488279 HIST2H2BEQ16778 126 aa12.68□□□□□ -0.38
PTPN4-211ENST00000488279 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.68□□□□□ -0.38
PTPN4-211ENST00000488279 C9orf153Q5TBE3 101 aa12.68□□□□□ -0.38
PTPN4-211ENST00000488279 LINC00308Q8TCZ7 52 aa12.68□□□□□ -0.38
PTPN4-211ENST00000488279 HIST1H2BHQ93079 126 aa12.68□□□□□ -0.38
PTPN4-211ENST00000488279 HIST1H2BNQ99877 126 aa12.68□□□□□ -0.38
PTPN4-211ENST00000488279 HIST1H2BMQ99879 126 aa12.68□□□□□ -0.38
PTPN4-211ENST00000488279 SPANXCQ9NY87 97 aa12.68□□□□□ -0.38
PTPN4-211ENST00000488279 ST20-AS1Q8NBB2 130 aa12.67□□□□□ -0.38
PTPN4-211ENST00000488279 OR13C6PQ8NH95 151 aa12.67□□□□□ -0.38
PTPN4-211ENST00000488279 LITAFQ99732 161 aa12.67□□□□□ -0.38
PTPN4-211ENST00000488279 TIMM17BO60830 172 aa12.66□□□□□ -0.38
PTPN4-211ENST00000488279 LINC01545Q5VT33 79 aa12.66□□□□□ -0.38
PTPN4-211ENST00000488279 ASB16-AS1Q495Z4 193 aa12.65□□□□□ -0.38
PTPN4-211ENST00000488279 PET117Q6UWS5 81 aa12.65□□□□□ -0.38
PTPN4-211ENST00000488279 ZNF815PA8K554 130 aa12.63□□□□□ -0.39
PTPN4-211ENST00000488279 LCE2DQ5TA82 110 aaPredicted RBP12.62□□□□□ -0.39
PTPN4-211ENST00000488279 SEC61BP60468 96 aaKnown RBP12.61□□□□□ -0.39
PTPN4-211ENST00000488279 DHRS4-AS1Q9P1J3 65 aa12.61□□□□□ -0.39
PTPN4-211ENST00000488279 SPANXDQ9BXN6 97 aa12.6□□□□□ -0.39
PTPN4-211ENST00000488279 KRTAP9-2Q9BYQ4 174 aa12.6□□□□□ -0.39
PTPN4-211ENST00000488279 SLC25A34Q6PIV7 304 aa12.59□□□□□ -0.39
PTPN4-211ENST00000488279 LINC00518Q8N0U6 118 aa12.59□□□□□ -0.39
PTPN4-211ENST00000488279 C3orf79P0CE67 100 aa12.57□□□□□ -0.4
PTPN4-211ENST00000488279 SPRR1BP22528 89 aa12.57□□□□□ -0.4
PTPN4-211ENST00000488279 TTTY13Q9BZ97 58 aa12.57□□□□□ -0.4
PTPN4-211ENST00000488279 COX7BP24311 80 aa12.54□□□□□ -0.4
PTPN4-211ENST00000488279 LAMTOR3Q9UHA4 124 aa12.54□□□□□ -0.4
PTPN4-211ENST00000488279 ELOF1P60002 83 aaKnown RBP12.53□□□□□ -0.4
PTPN4-211ENST00000488279 C6orf99Q4VX62 202 aa12.53□□□□□ -0.4
PTPN4-211ENST00000488279 KRTDAPP60985 99 aa12.52□□□□□ -0.41
PTPN4-211ENST00000488279 SCGB1D4Q6XE38 83 aa12.52□□□□□ -0.41
PTPN4-211ENST00000488279 XP32Q5T750 250 aa12.51□□□□□ -0.41
PTPN4-211ENST00000488279 COA6Q5JTJ3 125 aaKnown RBP12.5□□□□□ -0.41
PTPN4-211ENST00000488279 HRCT1Q6UXD1 115 aa12.5□□□□□ -0.41
PTPN4-211ENST00000488279 LIMD2Q9BT23 127 aa12.5□□□□□ -0.41
PTPN4-211ENST00000488279 TAL2Q16559 108 aa12.49□□□□□ -0.41
PTPN4-211ENST00000488279 COPS9Q8WXC6 57 aa12.49□□□□□ -0.41
PTPN4-211ENST00000488279 KRTAP4-1Q9BYQ7 146 aa12.49□□□□□ -0.41
PTPN4-211ENST00000488279 TRBV7-6A0A0J9YX20 115 aa12.47□□□□□ -0.41
PTPN4-211ENST00000488279 C20orf202A1L168 122 aa12.47□□□□□ -0.41
PTPN4-211ENST00000488279 LINC01547P58512 204 aaPredicted RBP12.47□□□□□ -0.41
PTPN4-211ENST00000488279 DEFB105AQ8NG35 78 aa12.47□□□□□ -0.41
PTPN4-211ENST00000488279 TEX49A0A1B0GTD5 131 aa12.45□□□□□ -0.42
PTPN4-211ENST00000488279 IFITM1P13164 125 aa12.45□□□□□ -0.42
PTPN4-211ENST00000488279 Q1RN00 199 aa12.44□□□□□ -0.42
PTPN4-211ENST00000488279 A6NDN8 102 aa12.43□□□□□ -0.42
PTPN4-211ENST00000488279 ANKRD39Q53RE8 183 aa12.43□□□□□ -0.42
PTPN4-211ENST00000488279 Q6ZVH6 145 aa12.43□□□□□ -0.42
PTPN4-211ENST00000488279 PRO1933Q9H354 126 aa12.43□□□□□ -0.42
PTPN4-211ENST00000488279 CD164Q04900 197 aa12.42□□□□□ -0.42
PTPN4-211ENST00000488279 A0A1B0GWB2 263 aa12.41□□□□□ -0.42
PTPN4-211ENST00000488279 ATOH7Q8N100 152 aa12.4□□□□□ -0.42
PTPN4-211ENST00000488279 AKR1D1P51857 326 aa12.39□□□□□ -0.43
PTPN4-211ENST00000488279 MUSTN1Q8IVN3 82 aa12.39□□□□□ -0.43
PTPN4-211ENST00000488279 PCP2Q8IVA1 136 aa12.38□□□□□ -0.43
PTPN4-211ENST00000488279 H7C2G1 150 aa12.37□□□□□ -0.43
PTPN4-211ENST00000488279 A4D1N5 150 aa12.36□□□□□ -0.43
PTPN4-211ENST00000488279 SMIM29Q86T20 159 aa12.36□□□□□ -0.43
PTPN4-211ENST00000488279 IGLV5-48A0A075B6I7 105 aa12.35□□□□□ -0.43
PTPN4-211ENST00000488279 TRAV13-2A0A0B4J235 113 aa12.34□□□□□ -0.43
PTPN4-211ENST00000488279 C9orf92A6NGG3 77 aa12.34□□□□□ -0.43
PTPN4-211ENST00000488279 SNRPEP62304 92 aaKnown RBP12.32□□□□□ -0.44
PTPN4-211ENST00000488279 NHP2Q9NX24 153 aaKnown RBP12.32□□□□□ -0.44
PTPN4-211ENST00000488279 Q5XG85 94 aa12.31□□□□□ -0.44
PTPN4-211ENST00000488279 PCOTHQ58A44 107 aa12.3□□□□□ -0.44
PTPN4-211ENST00000488279 SMIM11BQ8TCY0 68 aa12.3□□□□□ -0.44
PTPN4-211ENST00000488279 A0A0G2JQZ4 141 aa12.26□□□□□ -0.45
PTPN4-211ENST00000488279 C1orf195Q5TG92 126 aa12.26□□□□□ -0.45
PTPN4-211ENST00000488279 IGLV8-61A0A075B6I0 122 aa12.25□□□□□ -0.45
PTPN4-211ENST00000488279 VAMP3Q15836 100 aa12.25□□□□□ -0.45
PTPN4-211ENST00000488279 KRTAP9-6A0A140TA67 174 aa12.23□□□□□ -0.45
PTPN4-211ENST00000488279 HSBP1L1C9JCN9 74 aa12.21□□□□□ -0.45
PTPN4-211ENST00000488279 LCE2CQ5TA81 110 aa12.21□□□□□ -0.45
PTPN4-211ENST00000488279 S100A2P29034 98 aa12.2□□□□□ -0.46
PTPN4-211ENST00000488279 F8WEM9 126 aa12.19□□□□□ -0.46
PTPN4-211ENST00000488279 TCL1BO95988 128 aa12.19□□□□□ -0.46
PTPN4-211ENST00000488279 LINC00575Q6W349 94 aa12.19□□□□□ -0.46
PTPN4-211ENST00000488279 HIST3H2BBQ8N257 126 aa12.19□□□□□ -0.46
PTPN4-211ENST00000488279 HIST1H2BLQ99880 126 aa12.18□□□□□ -0.46
PTPN4-211ENST00000488279 KRTAP19-2Q3LHN2 52 aa12.16□□□□□ -0.46
PTPN4-211ENST00000488279 hADV29S1A0JD25 119 aa12.15□□□□□ -0.46
PTPN4-211ENST00000488279 Q6ZQY7 126 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 110.6 ms