RNA–Protein interactions for RNA: ENST00000487461.1

VPS16-208, Transcript of VPS16, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS16, Length 634 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16-208ENST00000487461 SFTA2Q6UW10 78 aa7.02□□□□□ -1.29
VPS16-208ENST00000487461 CHTOPQ9Y3Y2 248 aaKnown RBP7.02□□□□□ -1.29
VPS16-208ENST00000487461 HIGD2AQ9BW72 106 aa7.01□□□□□ -1.29
VPS16-208ENST00000487461 FAT4Q6V0I7 4981 aa7□□□□□ -1.29
VPS16-208ENST00000487461 TMEM223A0PJW6 202 aa7□□□□□ -1.29
VPS16-208ENST00000487461 A6NDN8 102 aa7□□□□□ -1.29
VPS16-208ENST00000487461 PLNP26678 52 aa7□□□□□ -1.29
VPS16-208ENST00000487461 TPRXLQ17RH7 258 aa7□□□□□ -1.29
VPS16-208ENST00000487461 SPRR4Q96PI1 79 aa7□□□□□ -1.29
VPS16-208ENST00000487461 CDIP1Q9H305 208 aa7□□□□□ -1.29
VPS16-208ENST00000487461 TAL2Q16559 108 aa6.99□□□□□ -1.29
VPS16-208ENST00000487461 LCE2AQ5TA79 106 aaPredicted RBP6.99□□□□□ -1.29
VPS16-208ENST00000487461 SMIM13P0DJ93 91 aa6.98□□□□□ -1.29
VPS16-208ENST00000487461 PPDPFQ9H3Y8 114 aa6.97□□□□□ -1.29
VPS16-208ENST00000487461 MUC17Q685J3 4493 aa6.97□□□□□ -1.29
VPS16-208ENST00000487461 C9orf118A6NHY6 69 aa6.96□□□□□ -1.3
VPS16-208ENST00000487461 VAMP3Q15836 100 aa6.96□□□□□ -1.3
VPS16-208ENST00000487461 SPAG11AQ6PDA7 123 aa6.96□□□□□ -1.3
VPS16-208ENST00000487461 PCP2Q8IVA1 136 aa6.96□□□□□ -1.3
VPS16-208ENST00000487461 PRYO14603 147 aa6.95□□□□□ -1.3
VPS16-208ENST00000487461 NCR3O14931 201 aa6.95□□□□□ -1.3
VPS16-208ENST00000487461 SPRR1AP35321 89 aa6.95□□□□□ -1.3
VPS16-208ENST00000487461 NMUP48645 174 aa6.95□□□□□ -1.3
VPS16-208ENST00000487461 MEIG1Q5JSS6 88 aa6.95□□□□□ -1.3
VPS16-208ENST00000487461 MIR7-3HGQ8N6C7 128 aa6.95□□□□□ -1.3
VPS16-208ENST00000487461 SMCR5Q8TEV8 140 aa6.95□□□□□ -1.3
VPS16-208ENST00000487461 KCNQ1DNQ9H478 68 aa6.95□□□□□ -1.3
VPS16-208ENST00000487461 KRTAP4-16G5E9R7 235 aaPredicted RBP6.94□□□□□ -1.3
VPS16-208ENST00000487461 LINC00337Q8N6G1 96 aa6.94□□□□□ -1.3
VPS16-208ENST00000487461 DAND5Q8N907 189 aa6.94□□□□□ -1.3
VPS16-208ENST00000487461 ZNF706Q9Y5V0 76 aaPredicted RBP6.94□□□□□ -1.3
VPS16-208ENST00000487461 E9PLD3 99 aa6.93□□□□□ -1.3
VPS16-208ENST00000487461 HERV-K104P63124 156 aa6.93□□□□□ -1.3
VPS16-208ENST00000487461 C4orf48Q5BLP8 95 aa6.93□□□□□ -1.3
VPS16-208ENST00000487461 Q8NBF4 154 aa6.93□□□□□ -1.3
VPS16-208ENST00000487461 TRBV10-3A0A0K0K1G6 114 aa6.92□□□□□ -1.3
VPS16-208ENST00000487461 Q6ZVH6 145 aa6.92□□□□□ -1.3
VPS16-208ENST00000487461 GTF2H5Q6ZYL4 71 aa6.92□□□□□ -1.3
VPS16-208ENST00000487461 NDUFA12Q9UI09 145 aa6.92□□□□□ -1.3
VPS16-208ENST00000487461 FP248Q71RG6 208 aaPredicted RBP6.91□□□□□ -1.3
VPS16-208ENST00000487461 CEND1Q8N111 149 aa6.91□□□□□ -1.3
VPS16-208ENST00000487461 MYMXA0A1B0GTQ4 84 aa6.9□□□□□ -1.3
VPS16-208ENST00000487461 ETDCA0A1B0GVM5 59 aa6.9□□□□□ -1.3
VPS16-208ENST00000487461 HERVK_113P61574 105 aa6.9□□□□□ -1.3
VPS16-208ENST00000487461 LINC00483Q53H64 154 aa6.9□□□□□ -1.3
VPS16-208ENST00000487461 LOC107984156A0A0G2JMH3 177 aa6.89□□□□□ -1.31
VPS16-208ENST00000487461 A0A1B0GWB2 263 aa6.89□□□□□ -1.31
VPS16-208ENST00000487461 B5MCH6 92 aa6.89□□□□□ -1.31
VPS16-208ENST00000487461 ERC2-IT1O76042 136 aa6.89□□□□□ -1.31
VPS16-208ENST00000487461 TSPEAR-AS2P59090 65 aa6.89□□□□□ -1.31
VPS16-208ENST00000487461 KRTAP13-3Q3SY46 172 aa6.89□□□□□ -1.31
VPS16-208ENST00000487461 GAGE2AQ6NT46 116 aa6.89□□□□□ -1.31
VPS16-208ENST00000487461 ARL17AQ8IVW1 177 aa6.89□□□□□ -1.31
VPS16-208ENST00000487461 CBY1Q9Y3M2 126 aa6.89□□□□□ -1.31
VPS16-208ENST00000487461 K7EP34 96 aa6.88□□□□□ -1.31
VPS16-208ENST00000487461 LEPROTO15243 131 aa6.88□□□□□ -1.31
VPS16-208ENST00000487461 SPINK1P00995 79 aa6.88□□□□□ -1.31
VPS16-208ENST00000487461 A0A1W2PPM0 123 aa6.87□□□□□ -1.31
VPS16-208ENST00000487461 H3BUT2 72 aa6.86□□□□□ -1.31
VPS16-208ENST00000487461 FABP2P12104 132 aa6.86□□□□□ -1.31
VPS16-208ENST00000487461 FXYD2P54710 66 aa6.86□□□□□ -1.31
VPS16-208ENST00000487461 Q9BRP9 147 aa6.86□□□□□ -1.31
VPS16-208ENST00000487461 IGLV9-49A0A0B4J1Y8 123 aa6.85□□□□□ -1.31
VPS16-208ENST00000487461 TRBV10-2A0A0K0K1G8 114 aa6.85□□□□□ -1.31
VPS16-208ENST00000487461 MOBPQ13875 183 aa6.85□□□□□ -1.31
VPS16-208ENST00000487461 SSBP3-AS1Q7Z2R9 100 aa6.85□□□□□ -1.31
VPS16-208ENST00000487461 HIST1H4GQ99525 98 aa6.85□□□□□ -1.31
VPS16-208ENST00000487461 TTTY13Q9BZ97 58 aa6.85□□□□□ -1.31
VPS16-208ENST00000487461 SPANXB1Q9NS25 103 aaPredicted RBP6.85□□□□□ -1.31
VPS16-208ENST00000487461 TMEM238LA0A1B0GVL6 79 aa6.84□□□□□ -1.31
VPS16-208ENST00000487461 A6NJY4 79 aa6.84□□□□□ -1.31
VPS16-208ENST00000487461 J3QQQ9 107 aa6.84□□□□□ -1.31
VPS16-208ENST00000487461 ASB16-AS1Q495Z4 193 aa6.84□□□□□ -1.31
VPS16-208ENST00000487461 ZNF815PA8K554 130 aa6.83□□□□□ -1.32
VPS16-208ENST00000487461 Q8N377 158 aa6.83□□□□□ -1.32
VPS16-208ENST00000487461 KRTAP4-1Q9BYQ7 146 aa6.83□□□□□ -1.32
VPS16-208ENST00000487461 SPCS1Q9Y6A9 102 aa6.83□□□□□ -1.32
VPS16-208ENST00000487461 K7ERU9 68 aa6.82□□□□□ -1.32
VPS16-208ENST00000487461 IGLV6-57P01721 117 aa6.82□□□□□ -1.32
VPS16-208ENST00000487461 OCIAD2Q56VL3 154 aa6.82□□□□□ -1.32
VPS16-208ENST00000487461 Q6ZRX8 168 aa6.82□□□□□ -1.32
VPS16-208ENST00000487461 RAB37Q96AX2 223 aa6.82□□□□□ -1.32
VPS16-208ENST00000487461 NHP2Q9NX24 153 aaKnown RBP6.82□□□□□ -1.32
VPS16-208ENST00000487461 EIF4EBP3O60516 100 aaPredicted RBP6.81□□□□□ -1.32
VPS16-208ENST00000487461 LGALS3P17931 250 aaKnown RBP6.81□□□□□ -1.32
VPS16-208ENST00000487461 RPS29P62273 56 aaKnown RBP6.81□□□□□ -1.32
VPS16-208ENST00000487461 SOSTDC1Q6X4U4 206 aa6.81□□□□□ -1.32
VPS16-208ENST00000487461 F8W1H4 67 aa6.8□□□□□ -1.32
VPS16-208ENST00000487461 NDUFC2O95298 119 aa6.8□□□□□ -1.32
VPS16-208ENST00000487461 S100A7L2Q5SY68 101 aa6.8□□□□□ -1.32
VPS16-208ENST00000487461 ADAMTSL4-AS1Q5T5F5 129 aa6.8□□□□□ -1.32
VPS16-208ENST00000487461 SCGB1D4Q6XE38 83 aa6.8□□□□□ -1.32
VPS16-208ENST00000487461 SLC25A20O43772 301 aa6.79□□□□□ -1.32
VPS16-208ENST00000487461 TRAV23DV6A0A075B6W5 121 aa6.78□□□□□ -1.32
VPS16-208ENST00000487461 A0A0J9YXY3 114 aa6.78□□□□□ -1.32
VPS16-208ENST00000487461 SEC61BP60468 96 aaKnown RBP6.78□□□□□ -1.32
VPS16-208ENST00000487461 NPC2P61916 151 aa6.78□□□□□ -1.32
VPS16-208ENST00000487461 ST20-AS1Q8NBB2 130 aa6.78□□□□□ -1.32
VPS16-208ENST00000487461 ZNF73O43830 326 aaPredicted RBP6.77□□□□□ -1.33
VPS16-208ENST00000487461 LYRM7Q5U5X0 104 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms