RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 SPANXB1Q9NS25 103 aaPredicted RBP13.89□□□□□ -0.19
LIME1-206ENST00000487026 SPINK1P00995 79 aa13.88□□□□□ -0.19
LIME1-206ENST00000487026 NPC2P61916 151 aa13.88□□□□□ -0.19
LIME1-206ENST00000487026 MOBPQ13875 183 aa13.88□□□□□ -0.19
LIME1-206ENST00000487026 HIST3H2BBQ8N257 126 aa13.88□□□□□ -0.19
LIME1-206ENST00000487026 SYS1-DBNDD2H3BUS1 97 aa13.87□□□□□ -0.19
LIME1-206ENST00000487026 SNRPEP62304 92 aaKnown RBP13.87□□□□□ -0.19
LIME1-206ENST00000487026 S100A7L2Q5SY68 101 aa13.87□□□□□ -0.19
LIME1-206ENST00000487026 PET117Q6UWS5 81 aa13.87□□□□□ -0.19
LIME1-206ENST00000487026 EIF4EBP3O60516 100 aaPredicted RBP13.86□□□□□ -0.19
LIME1-206ENST00000487026 Q6ZRX8 168 aa13.86□□□□□ -0.19
LIME1-206ENST00000487026 IGLV6-57P01721 117 aa13.85□□□□□ -0.19
LIME1-206ENST00000487026 AKR1D1P51857 326 aa13.85□□□□□ -0.19
LIME1-206ENST00000487026 KRTDAPP60985 99 aa13.85□□□□□ -0.19
LIME1-206ENST00000487026 ADAMTSL4-AS1Q5T5F5 129 aa13.85□□□□□ -0.19
LIME1-206ENST00000487026 SOSTDC1Q6X4U4 206 aa13.85□□□□□ -0.19
LIME1-206ENST00000487026 C20orf202A1L168 122 aa13.84□□□□□ -0.19
LIME1-206ENST00000487026 C5orf52A6NGY3 159 aa13.84□□□□□ -0.19
LIME1-206ENST00000487026 NDUFC2O95298 119 aa13.84□□□□□ -0.19
LIME1-206ENST00000487026 KRTAP13-3Q3SY46 172 aa13.84□□□□□ -0.19
LIME1-206ENST00000487026 HIST1H2BLQ99880 126 aa13.83□□□□□ -0.2
LIME1-206ENST00000487026 A0A0J9YXY3 114 aa13.82□□□□□ -0.2
LIME1-206ENST00000487026 C3orf79P0CE67 100 aa13.82□□□□□ -0.2
LIME1-206ENST00000487026 TRAV23DV6A0A075B6W5 121 aa13.81□□□□□ -0.2
LIME1-206ENST00000487026 SSBP3-AS1Q7Z2R9 100 aa13.81□□□□□ -0.2
LIME1-206ENST00000487026 LINC01545Q5VT33 79 aa13.79□□□□□ -0.2
LIME1-206ENST00000487026 E9PLD3 99 aa13.78□□□□□ -0.2
LIME1-206ENST00000487026 KRTAP9-2Q9BYQ4 174 aa13.78□□□□□ -0.2
LIME1-206ENST00000487026 ZNF73O43830 326 aaPredicted RBP13.77□□□□□ -0.21
LIME1-206ENST00000487026 Q8N377 158 aa13.77□□□□□ -0.21
LIME1-206ENST00000487026 TMA7Q9Y2S6 64 aaKnown RBP13.77□□□□□ -0.21
LIME1-206ENST00000487026 JOSD1Q15040 202 aaPredicted RBP13.76□□□□□ -0.21
LIME1-206ENST00000487026 ST20-AS1Q8NBB2 130 aa13.76□□□□□ -0.21
LIME1-206ENST00000487026 C9orf153Q5TBE3 101 aa13.73□□□□□ -0.21
LIME1-206ENST00000487026 RPS29P62273 56 aaKnown RBP13.72□□□□□ -0.21
LIME1-206ENST00000487026 ASB16-AS1Q495Z4 193 aa13.71□□□□□ -0.21
LIME1-206ENST00000487026 LITAFQ99732 161 aa13.71□□□□□ -0.21
LIME1-206ENST00000487026 LINC00308Q8TCZ7 52 aa13.7□□□□□ -0.22
LIME1-206ENST00000487026 SLC25A20O43772 301 aa13.69□□□□□ -0.22
LIME1-206ENST00000487026 OR13C6PQ8NH95 151 aa13.69□□□□□ -0.22
LIME1-206ENST00000487026 HINT1P49773 126 aaPredicted RBP13.67□□□□□ -0.22
LIME1-206ENST00000487026 KRTAP4-1Q9BYQ7 146 aa13.67□□□□□ -0.22
LIME1-206ENST00000487026 SPANXCQ9NY87 97 aa13.66□□□□□ -0.22
LIME1-206ENST00000487026 SCGB1D1O95968 90 aa13.65□□□□□ -0.22
LIME1-206ENST00000487026 TTTY13Q9BZ97 58 aa13.65□□□□□ -0.22
LIME1-206ENST00000487026 TIMM17BO60830 172 aa13.63□□□□□ -0.23
LIME1-206ENST00000487026 SEC61BP60468 96 aaKnown RBP13.63□□□□□ -0.23
LIME1-206ENST00000487026 CBY1Q9Y3M2 126 aa13.63□□□□□ -0.23
LIME1-206ENST00000487026 ZNF815PA8K554 130 aa13.62□□□□□ -0.23
LIME1-206ENST00000487026 HSBP1L1C9JCN9 74 aa13.62□□□□□ -0.23
LIME1-206ENST00000487026 ATOH7Q8N100 152 aa13.6□□□□□ -0.23
LIME1-206ENST00000487026 HRCT1Q6UXD1 115 aa13.59□□□□□ -0.23
LIME1-206ENST00000487026 SPRR1BP22528 89 aa13.58□□□□□ -0.24
LIME1-206ENST00000487026 SPANXDQ9BXN6 97 aa13.58□□□□□ -0.24
LIME1-206ENST00000487026 DHRS4-AS1Q9P1J3 65 aa13.58□□□□□ -0.24
LIME1-206ENST00000487026 XP32Q5T750 250 aa13.56□□□□□ -0.24
LIME1-206ENST00000487026 COX7BP24311 80 aa13.55□□□□□ -0.24
LIME1-206ENST00000487026 C6orf99Q4VX62 202 aa13.54□□□□□ -0.24
LIME1-206ENST00000487026 ELOF1P60002 83 aaKnown RBP13.53□□□□□ -0.24
LIME1-206ENST00000487026 LINC00518Q8N0U6 118 aa13.53□□□□□ -0.24
LIME1-206ENST00000487026 SLC25A34Q6PIV7 304 aa13.52□□□□□ -0.25
LIME1-206ENST00000487026 DEFB105AQ8NG35 78 aa13.52□□□□□ -0.25
LIME1-206ENST00000487026 LAMTOR3Q9UHA4 124 aa13.52□□□□□ -0.25
LIME1-206ENST00000487026 LINC01547P58512 204 aaPredicted RBP13.51□□□□□ -0.25
LIME1-206ENST00000487026 TAL2Q16559 108 aa13.49□□□□□ -0.25
LIME1-206ENST00000487026 ANKRD39Q53RE8 183 aa13.49□□□□□ -0.25
LIME1-206ENST00000487026 Q1RN00 199 aa13.48□□□□□ -0.25
LIME1-206ENST00000487026 SCGB1D4Q6XE38 83 aa13.48□□□□□ -0.25
LIME1-206ENST00000487026 LIMD2Q9BT23 127 aa13.47□□□□□ -0.25
LIME1-206ENST00000487026 VAMP8Q9BV40 100 aa13.45□□□□□ -0.26
LIME1-206ENST00000487026 C9orf92A6NGG3 77 aa13.43□□□□□ -0.26
LIME1-206ENST00000487026 TEX49A0A1B0GTD5 131 aa13.42□□□□□ -0.26
LIME1-206ENST00000487026 A6NDN8 102 aa13.41□□□□□ -0.26
LIME1-206ENST00000487026 PYY3Q5JQD4 70 aa13.41□□□□□ -0.26
LIME1-206ENST00000487026 TRBV7-6A0A0J9YX20 115 aa13.4□□□□□ -0.26
LIME1-206ENST00000487026 H7C2G1 150 aa13.4□□□□□ -0.26
LIME1-206ENST00000487026 PCP2Q8IVA1 136 aa13.4□□□□□ -0.26
LIME1-206ENST00000487026 MUSTN1Q8IVN3 82 aa13.4□□□□□ -0.26
LIME1-206ENST00000487026 PRO1933Q9H354 126 aa13.4□□□□□ -0.26
LIME1-206ENST00000487026 IFITM1P13164 125 aa13.39□□□□□ -0.27
LIME1-206ENST00000487026 SMIM29Q86T20 159 aa13.39□□□□□ -0.27
LIME1-206ENST00000487026 PAM16Q9Y3D7 125 aa13.39□□□□□ -0.27
LIME1-206ENST00000487026 SPATA45Q537H7 98 aa13.38□□□□□ -0.27
LIME1-206ENST00000487026 A0A0G2JQZ4 141 aa13.37□□□□□ -0.27
LIME1-206ENST00000487026 KRTAP9-6A0A140TA67 174 aa13.37□□□□□ -0.27
LIME1-206ENST00000487026 A0A1B0GWB2 263 aa13.37□□□□□ -0.27
LIME1-206ENST00000487026 CD164Q04900 197 aa13.37□□□□□ -0.27
LIME1-206ENST00000487026 PCOTHQ58A44 107 aa13.37□□□□□ -0.27
LIME1-206ENST00000487026 COPS9Q8WXC6 57 aa13.37□□□□□ -0.27
LIME1-206ENST00000487026 COX8AP10176 69 aa13.35□□□□□ -0.27
LIME1-206ENST00000487026 Q6ZVH6 145 aa13.34□□□□□ -0.27
LIME1-206ENST00000487026 DLEU1O43261 78 aa13.33□□□□□ -0.28
LIME1-206ENST00000487026 LCE2CQ5TA81 110 aa13.33□□□□□ -0.28
LIME1-206ENST00000487026 IGLV5-48A0A075B6I7 105 aa13.32□□□□□ -0.28
LIME1-206ENST00000487026 IGLV8-61A0A075B6I0 122 aa13.31□□□□□ -0.28
LIME1-206ENST00000487026 SMIM11BQ8TCY0 68 aa13.29□□□□□ -0.28
LIME1-206ENST00000487026 C14orf144Q96I85 54 aa13.29□□□□□ -0.28
LIME1-206ENST00000487026 SMIM6P0DI80 62 aa13.28□□□□□ -0.28
LIME1-206ENST00000487026 C1orf195Q5TG92 126 aa13.28□□□□□ -0.28
LIME1-206ENST00000487026 TRAV13-2A0A0B4J235 113 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms