RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 A0A1B0GU69 56 aa0.71□□□□□ -2.3
VPS50-213ENST00000477572 PLNP26678 52 aa0.71□□□□□ -2.3
VPS50-213ENST00000477572 SNRPGP62308 76 aaKnown RBP0.71□□□□□ -2.3
VPS50-213ENST00000477572 SERF2P84101 59 aa0.71□□□□□ -2.3
VPS50-213ENST00000477572 COX17Q14061 63 aa0.71□□□□□ -2.3
VPS50-213ENST00000477572 A0A0G2JMZ2 1700 aa0.71□□□□□ -2.3
VPS50-213ENST00000477572 LRRC37A2A6NM11 1700 aa0.71□□□□□ -2.3
VPS50-213ENST00000477572 LRRC37AA6NMS7 1700 aa0.71□□□□□ -2.3
VPS50-213ENST00000477572 CNOT1A5YKK6 2376 aaKnown RBP0.71□□□□□ -2.3
VPS50-213ENST00000477572 ZNF469Q96JG9 3925 aaPredicted RBP0.7□□□□□ -2.3
VPS50-213ENST00000477572 SSC5DA1L4H1 1573 aa0.7□□□□□ -2.3
VPS50-213ENST00000477572 ALMS1Q8TCU4 4167 aa0.7□□□□□ -2.3
VPS50-213ENST00000477572 DOPEY2Q9Y3R5 2298 aa0.7□□□□□ -2.3
VPS50-213ENST00000477572 LINC01546A6NGU7 62 aa0.7□□□□□ -2.3
VPS50-213ENST00000477572 G3V318 75 aa0.7□□□□□ -2.3
VPS50-213ENST00000477572 INE1O15225 51 aa0.7□□□□□ -2.3
VPS50-213ENST00000477572 COX7BP24311 80 aa0.7□□□□□ -2.3
VPS50-213ENST00000477572 CCL19Q99731 98 aa0.7□□□□□ -2.3
VPS50-213ENST00000477572 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.7□□□□□ -2.3
VPS50-213ENST00000477572 M0R2N4 97 aa0.69□□□□□ -2.3
VPS50-213ENST00000477572 NDUFA3O95167 84 aa0.69□□□□□ -2.3
VPS50-213ENST00000477572 FXYD6P3P58550 94 aa0.69□□□□□ -2.3
VPS50-213ENST00000477572 HAMPP81172 84 aa0.69□□□□□ -2.3
VPS50-213ENST00000477572 TNRC6CQ9HCJ0 1690 aaKnown RBP0.69□□□□□ -2.3
VPS50-213ENST00000477572 A0A096LNT2 108 aa0.68□□□□□ -2.3
VPS50-213ENST00000477572 GVQW2A0A096LPI5 108 aaPredicted RBP0.68□□□□□ -2.3
VPS50-213ENST00000477572 ETDCA0A1B0GVM5 59 aa0.68□□□□□ -2.3
VPS50-213ENST00000477572 NCR3O14931 201 aa0.68□□□□□ -2.3
VPS50-213ENST00000477572 CACNA1EQ15878 2313 aa0.68□□□□□ -2.3
VPS50-213ENST00000477572 DEFB114Q30KQ6 69 aa0.68□□□□□ -2.3
VPS50-213ENST00000477572 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.68□□□□□ -2.3
VPS50-213ENST00000477572 Q6ZQY7 126 aa0.68□□□□□ -2.3
VPS50-213ENST00000477572 Q6ZRX8 168 aa0.68□□□□□ -2.3
VPS50-213ENST00000477572 SSBP3-AS1Q7Z2R9 100 aa0.68□□□□□ -2.3
VPS50-213ENST00000477572 KCNQ1DNQ9H478 68 aa0.68□□□□□ -2.3
VPS50-213ENST00000477572 PTPRQQ9UMZ3 2332 aa0.67□□□□□ -2.3
VPS50-213ENST00000477572 NAV3Q8IVL0 2385 aa0.67□□□□□ -2.3
VPS50-213ENST00000477572 CPSF4LA6NMK7 179 aaKnown RBP0.67□□□□□ -2.3
VPS50-213ENST00000477572 LOC730098B7Z3J9 87 aa0.67□□□□□ -2.3
VPS50-213ENST00000477572 LY6G6CO95867 125 aa0.67□□□□□ -2.3
VPS50-213ENST00000477572 SMIM11BQ8TCY0 68 aa0.67□□□□□ -2.3
VPS50-213ENST00000477572 PLAC4Q8WY50 150 aa0.67□□□□□ -2.3
VPS50-213ENST00000477572 CRIPTQ9P021 101 aa0.67□□□□□ -2.3
VPS50-213ENST00000477572 PDE4DIPQ5VU43 2346 aa0.67□□□□□ -2.3
VPS50-213ENST00000477572 PLCE1Q9P212 2302 aa0.66□□□□□ -2.3
VPS50-213ENST00000477572 PIEZO2Q9H5I5 2752 aa0.66□□□□□ -2.3
VPS50-213ENST00000477572 PIN1P1O15428 100 aa0.66□□□□□ -2.3
VPS50-213ENST00000477572 CRIP1P50238 77 aa0.66□□□□□ -2.3
VPS50-213ENST00000477572 TFF3Q07654 80 aa0.66□□□□□ -2.3
VPS50-213ENST00000477572 PRO3102Q9H379 93 aa0.66□□□□□ -2.3
VPS50-213ENST00000477572 JMJD1CQ15652 2540 aa0.65□□□□□ -2.31
VPS50-213ENST00000477572 H0YGX0 51 aa0.65□□□□□ -2.31
VPS50-213ENST00000477572 C10orf99Q6UWK7 81 aa0.65□□□□□ -2.31
VPS50-213ENST00000477572 KNL1Q8NG31 2342 aa0.64□□□□□ -2.31
VPS50-213ENST00000477572 FAM208BQ5VWN6 2430 aa0.64□□□□□ -2.31
VPS50-213ENST00000477572 DEFB131BA0A096LNP1 70 aa0.64□□□□□ -2.31
VPS50-213ENST00000477572 SPTY2D1-AS1A0A0U1RR47 76 aa0.64□□□□□ -2.31
VPS50-213ENST00000477572 LINC00158P58513 81 aa0.64□□□□□ -2.31
VPS50-213ENST00000477572 RPL38P63173 70 aaKnown RBP0.64□□□□□ -2.31
VPS50-213ENST00000477572 TMEM167BQ9NRX6 74 aa0.64□□□□□ -2.31
VPS50-213ENST00000477572 CDKN2A-AS1Q9UH64 79 aa0.64□□□□□ -2.31
VPS50-213ENST00000477572 IGF2RP11717 2491 aa0.64□□□□□ -2.31
VPS50-213ENST00000477572 IAPPP10997 89 aa0.63□□□□□ -2.31
VPS50-213ENST00000477572 RPL37P61927 97 aaKnown RBP0.63□□□□□ -2.31
VPS50-213ENST00000477572 Q8IZM0 81 aa0.63□□□□□ -2.31
VPS50-213ENST00000477572 LINC00308Q8TCZ7 52 aa0.63□□□□□ -2.31
VPS50-213ENST00000477572 PTPRZ1P23471 2315 aaPredicted RBP0.63□□□□□ -2.31
VPS50-213ENST00000477572 I3L2K1 104 aa0.62□□□□□ -2.31
VPS50-213ENST00000477572 MRPL33O75394 65 aaKnown RBP0.62□□□□□ -2.31
VPS50-213ENST00000477572 LELP1Q5T871 98 aa0.62□□□□□ -2.31
VPS50-213ENST00000477572 UBE2DNLQ8IWF7 75 aa0.62□□□□□ -2.31
VPS50-213ENST00000477572 SMIM2Q9BVW6 85 aa0.62□□□□□ -2.31
VPS50-213ENST00000477572 C10orf95Q9H7T3 257 aa0.62□□□□□ -2.31
VPS50-213ENST00000477572 CNTRLQ7Z7A1 2325 aa0.61□□□□□ -2.31
VPS50-213ENST00000477572 USF3Q68DE3 2245 aa0.61□□□□□ -2.31
VPS50-213ENST00000477572 H0YAA0 97 aa0.61□□□□□ -2.31
VPS50-213ENST00000477572 K7EQZ3 153 aa0.61□□□□□ -2.31
VPS50-213ENST00000477572 NDUFA1O15239 70 aa0.61□□□□□ -2.31
VPS50-213ENST00000477572 SPINK13Q1W4C9 94 aa0.61□□□□□ -2.31
VPS50-213ENST00000477572 LINC00575Q6W349 94 aa0.61□□□□□ -2.31
VPS50-213ENST00000477572 RPS27LQ71UM5 84 aaKnown RBP0.61□□□□□ -2.31
VPS50-213ENST00000477572 MRPL34Q9BQ48 92 aaKnown RBP0.61□□□□□ -2.31
VPS50-213ENST00000477572 TTTY10Q9BZA0 68 aa0.61□□□□□ -2.31
VPS50-213ENST00000477572 PKDREJQ9NTG1 2253 aa0.61□□□□□ -2.31
VPS50-213ENST00000477572 C2CD3Q4AC94 2353 aa0.6□□□□□ -2.31
VPS50-213ENST00000477572 ARHGAP5-AS1Q96IT6 56 aa0.6□□□□□ -2.31
VPS50-213ENST00000477572 CNFNQ9BYD5 112 aa0.6□□□□□ -2.31
VPS50-213ENST00000477572 TP53AIP1Q9HCN2 124 aa0.6□□□□□ -2.31
VPS50-213ENST00000477572 REV3LO60673 3130 aa0.6□□□□□ -2.31
VPS50-213ENST00000477572 ZNF462Q96JM2 2506 aa0.6□□□□□ -2.31
VPS50-213ENST00000477572 TPRP12270 2363 aaKnown RBP0.59□□□□□ -2.31
VPS50-213ENST00000477572 LYNX1G3V0Z9 82 aa0.59□□□□□ -2.31
VPS50-213ENST00000477572 MINOS1Q5TGZ0 78 aa0.59□□□□□ -2.31
VPS50-213ENST00000477572 DEFB123Q8N688 67 aa0.59□□□□□ -2.31
VPS50-213ENST00000477572 DSPP15924 2871 aaKnown RBP0.59□□□□□ -2.32
VPS50-213ENST00000477572 PCNX1Q96RV3 2341 aa0.59□□□□□ -2.32
VPS50-213ENST00000477572 ASH1LQ9NR48 2969 aaKnown RBP0.58□□□□□ -2.32
VPS50-213ENST00000477572 WNK2Q9Y3S1 2297 aa0.58□□□□□ -2.32
VPS50-213ENST00000477572 CSPG4Q6UVK1 2322 aa0.58□□□□□ -2.32
VPS50-213ENST00000477572 K7EIL1 84 aa0.58□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms