RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 LOC107984156A0A0G2JMH3 177 aa6.95□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 SNRPEP62304 92 aaKnown RBP6.95□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 ARL17AQ8IVW1 177 aa6.95□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 A0A0J9YXY3 114 aa6.94□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 S100A12P80511 92 aa6.94□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 LINC00483Q53H64 154 aa6.94□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 FP248Q71RG6 208 aaPredicted RBP6.94□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 HIST1H2BLQ99880 126 aa6.94□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 TIMM17BO60830 172 aa6.93□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 KRTAP13-3Q3SY46 172 aa6.93□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 SMCR5Q8TEV8 140 aa6.93□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 ZNF706Q9Y5V0 76 aaPredicted RBP6.93□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 ZNF815PA8K554 130 aa6.92□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 Q8NBF4 154 aa6.92□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 TRBV10-3A0A0K0K1G6 114 aa6.91□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 TRBV10-2A0A0K0K1G8 114 aa6.91□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 NDUFC2O95298 119 aa6.91□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 DAND5Q8N907 189 aa6.91□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 B5MCH6 92 aa6.9□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 HSBP1L1C9JCN9 74 aa6.9□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 NCR3O14931 201 aa6.9□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 SPINK1P00995 79 aa6.9□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 SCGB1D4Q6XE38 83 aa6.9□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 COPS9Q8WXC6 57 aa6.9□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 SPANXB1Q9NS25 103 aaPredicted RBP6.9□□□□□ -1.3
MSH5-SAPCD1-205ENST00000476085 ERC2-IT1O76042 136 aa6.89□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 ASB16-AS1Q495Z4 193 aa6.89□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 C4orf48Q5BLP8 95 aa6.89□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 ATOH7Q8N100 152 aa6.89□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 CBY1Q9Y3M2 126 aa6.89□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 C5orf52A6NGY3 159 aa6.88□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 RPS29P62273 56 aaKnown RBP6.88□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 ADAMTSL4-AS1Q5T5F5 129 aa6.88□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 ETDCA0A1B0GVM5 59 aa6.87□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 DDTP30046 118 aa6.87□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 ANKRD39Q53RE8 183 aa6.87□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 S100A7L2Q5SY68 101 aa6.87□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 Q9BRP9 147 aa6.87□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 KRTAP4-1Q9BYQ7 146 aa6.87□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 XP32Q5T750 250 aa6.86□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 Q6ZVH6 145 aa6.86□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 SSBP3-AS1Q7Z2R9 100 aa6.86□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 Q8N377 158 aa6.86□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 LINC00308Q8TCZ7 52 aa6.86□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 LITAFQ99732 161 aa6.86□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 SPANXCQ9NY87 97 aa6.86□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 SCGB1D1O95968 90 aa6.85□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 NPC2P61916 151 aa6.85□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 GAGE2AQ6NT46 116 aa6.85□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 LINC00518Q8N0U6 118 aa6.85□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 SPANXDQ9BXN6 97 aa6.85□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 TTTY13Q9BZ97 58 aa6.85□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 IGLV6-57P01721 117 aa6.84□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 IFITM1P13164 125 aa6.84□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 SOSTDC1Q6X4U4 206 aa6.84□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 Q6ZRX8 168 aa6.84□□□□□ -1.31
MSH5-SAPCD1-205ENST00000476085 KRTAP4-8Q9BYQ9 185 aa6.83□□□□□ -1.32
MSH5-SAPCD1-205ENST00000476085 EIF4EBP3O60516 100 aaPredicted RBP6.82□□□□□ -1.32
MSH5-SAPCD1-205ENST00000476085 HINT1P49773 126 aaPredicted RBP6.82□□□□□ -1.32
MSH5-SAPCD1-205ENST00000476085 MOBPQ13875 183 aa6.82□□□□□ -1.32
MSH5-SAPCD1-205ENST00000476085 PCP2Q8IVA1 136 aa6.82□□□□□ -1.32
MSH5-SAPCD1-205ENST00000476085 TRAV23DV6A0A075B6W5 121 aa6.81□□□□□ -1.32
MSH5-SAPCD1-205ENST00000476085 KRTAP9-6A0A140TA67 174 aa6.81□□□□□ -1.32
MSH5-SAPCD1-205ENST00000476085 JOSD1Q15040 202 aaPredicted RBP6.81□□□□□ -1.32
MSH5-SAPCD1-205ENST00000476085 IGLV9-49A0A0B4J1Y8 123 aa6.8□□□□□ -1.32
MSH5-SAPCD1-205ENST00000476085 OR13C6PQ8NH95 151 aa6.8□□□□□ -1.32
MSH5-SAPCD1-205ENST00000476085 SLC25A20O43772 301 aa6.79□□□□□ -1.32
MSH5-SAPCD1-205ENST00000476085 ZNF73O43830 326 aaPredicted RBP6.79□□□□□ -1.32
MSH5-SAPCD1-205ENST00000476085 SEC61BP60468 96 aaKnown RBP6.79□□□□□ -1.32
MSH5-SAPCD1-205ENST00000476085 MUSTN1Q8IVN3 82 aa6.77□□□□□ -1.33
MSH5-SAPCD1-205ENST00000476085 TRAV13-2A0A0B4J235 113 aa6.75□□□□□ -1.33
MSH5-SAPCD1-205ENST00000476085 DLEU1O43261 78 aa6.75□□□□□ -1.33
MSH5-SAPCD1-205ENST00000476085 COX8AP10176 69 aa6.75□□□□□ -1.33
MSH5-SAPCD1-205ENST00000476085 SPRR1BP22528 89 aa6.75□□□□□ -1.33
MSH5-SAPCD1-205ENST00000476085 ST20-AS1Q8NBB2 130 aa6.75□□□□□ -1.33
MSH5-SAPCD1-205ENST00000476085 A6NDN8 102 aa6.74□□□□□ -1.33
MSH5-SAPCD1-205ENST00000476085 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.74□□□□□ -1.33
MSH5-SAPCD1-205ENST00000476085 LINC01547P58512 204 aaPredicted RBP6.74□□□□□ -1.33
MSH5-SAPCD1-205ENST00000476085 KRTAP19-2Q3LHN2 52 aa6.74□□□□□ -1.33
MSH5-SAPCD1-205ENST00000476085 VAMP8Q9BV40 100 aa6.74□□□□□ -1.33
MSH5-SAPCD1-205ENST00000476085 TRBV7-6A0A0J9YX20 115 aa6.73□□□□□ -1.33
MSH5-SAPCD1-205ENST00000476085 SPATA45Q537H7 98 aa6.73□□□□□ -1.33
MSH5-SAPCD1-205ENST00000476085 DHRS4-AS1Q9P1J3 65 aa6.73□□□□□ -1.33
MSH5-SAPCD1-205ENST00000476085 HIST1H4GQ99525 98 aa6.72□□□□□ -1.33
MSH5-SAPCD1-205ENST00000476085 TMA7Q9Y2S6 64 aaKnown RBP6.72□□□□□ -1.33
MSH5-SAPCD1-205ENST00000476085 PAM16Q9Y3D7 125 aa6.72□□□□□ -1.33
MSH5-SAPCD1-205ENST00000476085 C6orf99Q4VX62 202 aa6.71□□□□□ -1.34
MSH5-SAPCD1-205ENST00000476085 C9orf153Q5TBE3 101 aa6.71□□□□□ -1.34
MSH5-SAPCD1-205ENST00000476085 A4D1N5 150 aa6.7□□□□□ -1.34
MSH5-SAPCD1-205ENST00000476085 COX7BP24311 80 aa6.7□□□□□ -1.34
MSH5-SAPCD1-205ENST00000476085 ELOF1P60002 83 aaKnown RBP6.7□□□□□ -1.34
MSH5-SAPCD1-205ENST00000476085 SLC25A34Q6PIV7 304 aa6.7□□□□□ -1.34
MSH5-SAPCD1-205ENST00000476085 C14orf144Q96I85 54 aa6.7□□□□□ -1.34
MSH5-SAPCD1-205ENST00000476085 A0A1B0GWB2 263 aa6.69□□□□□ -1.34
MSH5-SAPCD1-205ENST00000476085 HIGD1BQ9P298 99 aa6.69□□□□□ -1.34
MSH5-SAPCD1-205ENST00000476085 VAMP3Q15836 100 aa6.68□□□□□ -1.34
MSH5-SAPCD1-205ENST00000476085 NHP2Q9NX24 153 aaKnown RBP6.67□□□□□ -1.34
MSH5-SAPCD1-205ENST00000476085 PYY3Q5JQD4 70 aa6.66□□□□□ -1.34
MSH5-SAPCD1-205ENST00000476085 SMIM11BQ8TCY0 68 aa6.66□□□□□ -1.34
MSH5-SAPCD1-205ENST00000476085 CD164Q04900 197 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 133.4 ms