RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 GAGE2AQ6NT46 116 aa11.21□□□□□ -0.61
COL9A3-210ENST00000472880 MIEN1Q9BRT3 115 aa11.21□□□□□ -0.61
COL9A3-210ENST00000472880 DDTP30046 118 aa11.2□□□□□ -0.62
COL9A3-210ENST00000472880 C20orf202A1L168 122 aa11.19□□□□□ -0.62
COL9A3-210ENST00000472880 B5MCH6 92 aa11.19□□□□□ -0.62
COL9A3-210ENST00000472880 ADAMTSL4-AS1Q5T5F5 129 aa11.19□□□□□ -0.62
COL9A3-210ENST00000472880 TRBV10-2A0A0K0K1G8 114 aa11.18□□□□□ -0.62
COL9A3-210ENST00000472880 IGLV9-49A0A0B4J1Y8 123 aa11.17□□□□□ -0.62
COL9A3-210ENST00000472880 NDUFC2O95298 119 aa11.17□□□□□ -0.62
COL9A3-210ENST00000472880 MOBPQ13875 183 aa11.17□□□□□ -0.62
COL9A3-210ENST00000472880 KRTAP13-3Q3SY46 172 aa11.17□□□□□ -0.62
COL9A3-210ENST00000472880 SOSTDC1Q6X4U4 206 aa11.17□□□□□ -0.62
COL9A3-210ENST00000472880 SPANXB1Q9NS25 103 aaPredicted RBP11.17□□□□□ -0.62
COL9A3-210ENST00000472880 ZNF815PA8K554 130 aa11.16□□□□□ -0.62
COL9A3-210ENST00000472880 NPC2P61916 151 aa11.16□□□□□ -0.62
COL9A3-210ENST00000472880 LITAFQ99732 161 aa11.16□□□□□ -0.62
COL9A3-210ENST00000472880 TTTY13Q9BZ97 58 aa11.16□□□□□ -0.62
COL9A3-210ENST00000472880 EIF4EBP3O60516 100 aaPredicted RBP11.15□□□□□ -0.62
COL9A3-210ENST00000472880 ERC2-IT1O76042 136 aa11.15□□□□□ -0.62
COL9A3-210ENST00000472880 Q6ZRX8 168 aa11.15□□□□□ -0.62
COL9A3-210ENST00000472880 TIMM17BO60830 172 aa11.14□□□□□ -0.63
COL9A3-210ENST00000472880 S100A7L2Q5SY68 101 aa11.14□□□□□ -0.63
COL9A3-210ENST00000472880 HIST3H2BBQ8N257 126 aa11.14□□□□□ -0.63
COL9A3-210ENST00000472880 ATOH7Q8N100 152 aa11.13□□□□□ -0.63
COL9A3-210ENST00000472880 Q9BRP9 147 aa11.13□□□□□ -0.63
COL9A3-210ENST00000472880 RPS29P62273 56 aaKnown RBP11.12□□□□□ -0.63
COL9A3-210ENST00000472880 SSBP3-AS1Q7Z2R9 100 aa11.12□□□□□ -0.63
COL9A3-210ENST00000472880 HIST1H2BLQ99880 126 aa11.12□□□□□ -0.63
COL9A3-210ENST00000472880 S100A2P29034 98 aa11.11□□□□□ -0.63
COL9A3-210ENST00000472880 AKR1D1P51857 326 aa11.11□□□□□ -0.63
COL9A3-210ENST00000472880 ASB16-AS1Q495Z4 193 aa11.11□□□□□ -0.63
COL9A3-210ENST00000472880 ANKRD39Q53RE8 183 aa11.11□□□□□ -0.63
COL9A3-210ENST00000472880 LINC00308Q8TCZ7 52 aa11.11□□□□□ -0.63
COL9A3-210ENST00000472880 TRAV23DV6A0A075B6W5 121 aa11.09□□□□□ -0.63
COL9A3-210ENST00000472880 IGLV6-57P01721 117 aa11.09□□□□□ -0.63
COL9A3-210ENST00000472880 S100A6P06703 90 aa11.09□□□□□ -0.63
COL9A3-210ENST00000472880 JOSD1Q15040 202 aaPredicted RBP11.09□□□□□ -0.63
COL9A3-210ENST00000472880 Q8N377 158 aa11.09□□□□□ -0.63
COL9A3-210ENST00000472880 SLC25A20O43772 301 aa11.07□□□□□ -0.64
COL9A3-210ENST00000472880 C9orf153Q5TBE3 101 aa11.07□□□□□ -0.64
COL9A3-210ENST00000472880 SPANXCQ9NY87 97 aa11.07□□□□□ -0.64
COL9A3-210ENST00000472880 SEC61BP60468 96 aaKnown RBP11.06□□□□□ -0.64
COL9A3-210ENST00000472880 SCGB1D4Q6XE38 83 aa11.06□□□□□ -0.64
COL9A3-210ENST00000472880 ZNF73O43830 326 aaPredicted RBP11.05□□□□□ -0.64
COL9A3-210ENST00000472880 SNRPEP62304 92 aaKnown RBP11.04□□□□□ -0.64
COL9A3-210ENST00000472880 SPANXDQ9BXN6 97 aa11.04□□□□□ -0.64
COL9A3-210ENST00000472880 PCP2Q8IVA1 136 aa11.03□□□□□ -0.64
COL9A3-210ENST00000472880 CBY1Q9Y3M2 126 aa11.02□□□□□ -0.65
COL9A3-210ENST00000472880 HINT1P49773 126 aaPredicted RBP11.01□□□□□ -0.65
COL9A3-210ENST00000472880 ST20-AS1Q8NBB2 130 aa11□□□□□ -0.65
COL9A3-210ENST00000472880 LINC01547P58512 204 aaPredicted RBP10.99□□□□□ -0.65
COL9A3-210ENST00000472880 OR13C6PQ8NH95 151 aa10.99□□□□□ -0.65
COL9A3-210ENST00000472880 C5orf52A6NGY3 159 aa10.98□□□□□ -0.65
COL9A3-210ENST00000472880 IFITM1P13164 125 aa10.97□□□□□ -0.65
COL9A3-210ENST00000472880 Q6ZVH6 145 aa10.97□□□□□ -0.65
COL9A3-210ENST00000472880 LINC00518Q8N0U6 118 aa10.97□□□□□ -0.65
COL9A3-210ENST00000472880 COPS9Q8WXC6 57 aa10.97□□□□□ -0.65
COL9A3-210ENST00000472880 KRTAP4-1Q9BYQ7 146 aa10.97□□□□□ -0.65
COL9A3-210ENST00000472880 HSBP1L1C9JCN9 74 aa10.96□□□□□ -0.65
COL9A3-210ENST00000472880 XP32Q5T750 250 aa10.95□□□□□ -0.66
COL9A3-210ENST00000472880 SLC25A34Q6PIV7 304 aa10.94□□□□□ -0.66
COL9A3-210ENST00000472880 KRTAP9-6A0A140TA67 174 aa10.93□□□□□ -0.66
COL9A3-210ENST00000472880 MUSTN1Q8IVN3 82 aa10.93□□□□□ -0.66
COL9A3-210ENST00000472880 SCGB1D1O95968 90 aa10.92□□□□□ -0.66
COL9A3-210ENST00000472880 LIMD2Q9BT23 127 aa10.92□□□□□ -0.66
COL9A3-210ENST00000472880 DHRS4-AS1Q9P1J3 65 aa10.92□□□□□ -0.66
COL9A3-210ENST00000472880 SPRR1BP22528 89 aa10.91□□□□□ -0.66
COL9A3-210ENST00000472880 LAMTOR3Q9UHA4 124 aa10.89□□□□□ -0.67
COL9A3-210ENST00000472880 C6orf99Q4VX62 202 aa10.88□□□□□ -0.67
COL9A3-210ENST00000472880 HRCT1Q6UXD1 115 aa10.88□□□□□ -0.67
COL9A3-210ENST00000472880 A6NDN8 102 aa10.87□□□□□ -0.67
COL9A3-210ENST00000472880 ELOF1P60002 83 aaKnown RBP10.87□□□□□ -0.67
COL9A3-210ENST00000472880 COX7BP24311 80 aa10.86□□□□□ -0.67
COL9A3-210ENST00000472880 TRAV13-2A0A0B4J235 113 aa10.83□□□□□ -0.68
COL9A3-210ENST00000472880 TRBV7-6A0A0J9YX20 115 aa10.82□□□□□ -0.68
COL9A3-210ENST00000472880 TAL2Q16559 108 aa10.82□□□□□ -0.68
COL9A3-210ENST00000472880 COX8AP10176 69 aa10.81□□□□□ -0.68
COL9A3-210ENST00000472880 Q1RN00 199 aa10.81□□□□□ -0.68
COL9A3-210ENST00000472880 DEFB105AQ8NG35 78 aa10.81□□□□□ -0.68
COL9A3-210ENST00000472880 A0A1B0GWB2 263 aa10.8□□□□□ -0.68
COL9A3-210ENST00000472880 C9orf92A6NGG3 77 aa10.8□□□□□ -0.68
COL9A3-210ENST00000472880 CD164Q04900 197 aa10.79□□□□□ -0.68
COL9A3-210ENST00000472880 PRO1933Q9H354 126 aa10.79□□□□□ -0.68
COL9A3-210ENST00000472880 TEX49A0A1B0GTD5 131 aa10.78□□□□□ -0.68
COL9A3-210ENST00000472880 A4D1N5 150 aa10.78□□□□□ -0.68
COL9A3-210ENST00000472880 DLEU1O43261 78 aa10.78□□□□□ -0.68
COL9A3-210ENST00000472880 SMIM11BQ8TCY0 68 aa10.78□□□□□ -0.68
COL9A3-210ENST00000472880 PCOTHQ58A44 107 aa10.77□□□□□ -0.69
COL9A3-210ENST00000472880 H7C2G1 150 aa10.76□□□□□ -0.69
COL9A3-210ENST00000472880 PAM16Q9Y3D7 125 aa10.76□□□□□ -0.69
COL9A3-210ENST00000472880 IGLV8-61A0A075B6I0 122 aa10.75□□□□□ -0.69
COL9A3-210ENST00000472880 SPATA45Q537H7 98 aa10.75□□□□□ -0.69
COL9A3-210ENST00000472880 HIST1H4GQ99525 98 aa10.75□□□□□ -0.69
COL9A3-210ENST00000472880 LCE2DQ5TA82 110 aaPredicted RBP10.74□□□□□ -0.69
COL9A3-210ENST00000472880 C14orf144Q96I85 54 aa10.74□□□□□ -0.69
COL9A3-210ENST00000472880 VAMP8Q9BV40 100 aa10.74□□□□□ -0.69
COL9A3-210ENST00000472880 LCE2CQ5TA81 110 aa10.73□□□□□ -0.69
COL9A3-210ENST00000472880 SMIM29Q86T20 159 aa10.7□□□□□ -0.7
COL9A3-210ENST00000472880 C12orf57Q99622 126 aa10.7□□□□□ -0.7
COL9A3-210ENST00000472880 IGLV5-48A0A075B6I7 105 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms