RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 CDIP1Q9H305 208 aa9□□□□□ -0.97
CCDC88B-205ENST00000472524 SYS1-DBNDD2H3BUS1 97 aa8.99□□□□□ -0.97
CCDC88B-205ENST00000472524 EIF4EBP3O60516 100 aaPredicted RBP8.99□□□□□ -0.97
CCDC88B-205ENST00000472524 TPRXLQ17RH7 258 aa8.99□□□□□ -0.97
CCDC88B-205ENST00000472524 LINC00483Q53H64 154 aa8.99□□□□□ -0.97
CCDC88B-205ENST00000472524 ADAMTSL4-AS1Q5T5F5 129 aa8.99□□□□□ -0.97
CCDC88B-205ENST00000472524 IGLV6-57P01721 117 aa8.98□□□□□ -0.97
CCDC88B-205ENST00000472524 Q6ZRX8 168 aa8.98□□□□□ -0.97
CCDC88B-205ENST00000472524 Q9BRP9 147 aa8.98□□□□□ -0.97
CCDC88B-205ENST00000472524 TRAV23DV6A0A075B6W5 121 aa8.97□□□□□ -0.97
CCDC88B-205ENST00000472524 IGLV9-49A0A0B4J1Y8 123 aa8.96□□□□□ -0.98
CCDC88B-205ENST00000472524 MOBPQ13875 183 aa8.96□□□□□ -0.98
CCDC88B-205ENST00000472524 LINC01545Q5VT33 79 aa8.94□□□□□ -0.98
CCDC88B-205ENST00000472524 ZNF73O43830 326 aaPredicted RBP8.93□□□□□ -0.98
CCDC88B-205ENST00000472524 JOSD1Q15040 202 aaPredicted RBP8.93□□□□□ -0.98
CCDC88B-205ENST00000472524 PET117Q6UWS5 81 aa8.93□□□□□ -0.98
CCDC88B-205ENST00000472524 ZNF815PA8K554 130 aa8.92□□□□□ -0.98
CCDC88B-205ENST00000472524 SPINK1P00995 79 aa8.92□□□□□ -0.98
CCDC88B-205ENST00000472524 FP248Q71RG6 208 aaPredicted RBP8.92□□□□□ -0.98
CCDC88B-205ENST00000472524 LINC00308Q8TCZ7 52 aa8.92□□□□□ -0.98
CCDC88B-205ENST00000472524 LITAFQ99732 161 aa8.92□□□□□ -0.98
CCDC88B-205ENST00000472524 OR13C6PQ8NH95 151 aa8.91□□□□□ -0.98
CCDC88B-205ENST00000472524 TTTY13Q9BZ97 58 aa8.91□□□□□ -0.98
CCDC88B-205ENST00000472524 TIMM17BO60830 172 aa8.9□□□□□ -0.98
CCDC88B-205ENST00000472524 C3orf79P0CE67 100 aa8.9□□□□□ -0.98
CCDC88B-205ENST00000472524 SPANXCQ9NY87 97 aa8.9□□□□□ -0.98
CCDC88B-205ENST00000472524 HINT1P49773 126 aaPredicted RBP8.89□□□□□ -0.99
CCDC88B-205ENST00000472524 KRTDAPP60985 99 aa8.89□□□□□ -0.99
CCDC88B-205ENST00000472524 C9orf153Q5TBE3 101 aa8.89□□□□□ -0.99
CCDC88B-205ENST00000472524 SSBP3-AS1Q7Z2R9 100 aa8.89□□□□□ -0.99
CCDC88B-205ENST00000472524 ST20-AS1Q8NBB2 130 aa8.89□□□□□ -0.99
CCDC88B-205ENST00000472524 CBY1Q9Y3M2 126 aa8.89□□□□□ -0.99
CCDC88B-205ENST00000472524 KRTAP9-6A0A140TA67 174 aa8.85□□□□□ -0.99
CCDC88B-205ENST00000472524 KRTAP13-3Q3SY46 172 aa8.85□□□□□ -0.99
CCDC88B-205ENST00000472524 COA6Q5JTJ3 125 aaKnown RBP8.85□□□□□ -0.99
CCDC88B-205ENST00000472524 Q8N377 158 aa8.85□□□□□ -0.99
CCDC88B-205ENST00000472524 RPS29P62273 56 aaKnown RBP8.84□□□□□ -0.99
CCDC88B-205ENST00000472524 SPANXDQ9BXN6 97 aa8.84□□□□□ -0.99
CCDC88B-205ENST00000472524 SCGB1D4Q6XE38 83 aa8.83□□□□□ -1
CCDC88B-205ENST00000472524 C20orf202A1L168 122 aa8.82□□□□□ -1
CCDC88B-205ENST00000472524 ANKRD39Q53RE8 183 aa8.82□□□□□ -1
CCDC88B-205ENST00000472524 ATOH7Q8N100 152 aa8.82□□□□□ -1
CCDC88B-205ENST00000472524 C5orf52A6NGY3 159 aa8.81□□□□□ -1
CCDC88B-205ENST00000472524 SLC25A20O43772 301 aa8.81□□□□□ -1
CCDC88B-205ENST00000472524 LINC00518Q8N0U6 118 aa8.81□□□□□ -1
CCDC88B-205ENST00000472524 DHRS4-AS1Q9P1J3 65 aa8.81□□□□□ -1
CCDC88B-205ENST00000472524 COX7BP24311 80 aa8.8□□□□□ -1
CCDC88B-205ENST00000472524 C6orf99Q4VX62 202 aa8.8□□□□□ -1
CCDC88B-205ENST00000472524 ELOF1P60002 83 aaKnown RBP8.79□□□□□ -1
CCDC88B-205ENST00000472524 SPRR1BP22528 89 aa8.78□□□□□ -1
CCDC88B-205ENST00000472524 SLC25A34Q6PIV7 304 aa8.77□□□□□ -1.01
CCDC88B-205ENST00000472524 HRCT1Q6UXD1 115 aa8.76□□□□□ -1.01
CCDC88B-205ENST00000472524 PCP2Q8IVA1 136 aa8.76□□□□□ -1.01
CCDC88B-205ENST00000472524 COPS9Q8WXC6 57 aa8.76□□□□□ -1.01
CCDC88B-205ENST00000472524 LAMTOR3Q9UHA4 124 aa8.76□□□□□ -1.01
CCDC88B-205ENST00000472524 IFITM1P13164 125 aa8.75□□□□□ -1.01
CCDC88B-205ENST00000472524 TAL2Q16559 108 aa8.75□□□□□ -1.01
CCDC88B-205ENST00000472524 DEFB105AQ8NG35 78 aa8.75□□□□□ -1.01
CCDC88B-205ENST00000472524 A6NDN8 102 aa8.74□□□□□ -1.01
CCDC88B-205ENST00000472524 Q1RN00 199 aa8.74□□□□□ -1.01
CCDC88B-205ENST00000472524 ASB16-AS1Q495Z4 193 aa8.74□□□□□ -1.01
CCDC88B-205ENST00000472524 MUSTN1Q8IVN3 82 aa8.74□□□□□ -1.01
CCDC88B-205ENST00000472524 Q6ZVH6 145 aa8.73□□□□□ -1.01
CCDC88B-205ENST00000472524 AKR1D1P51857 326 aa8.72□□□□□ -1.01
CCDC88B-205ENST00000472524 LIMD2Q9BT23 127 aa8.72□□□□□ -1.01
CCDC88B-205ENST00000472524 KRTAP4-1Q9BYQ7 146 aa8.72□□□□□ -1.01
CCDC88B-205ENST00000472524 TRBV7-6A0A0J9YX20 115 aa8.71□□□□□ -1.02
CCDC88B-205ENST00000472524 A0A1B0GWB2 263 aa8.71□□□□□ -1.02
CCDC88B-205ENST00000472524 SEC61BP60468 96 aaKnown RBP8.71□□□□□ -1.02
CCDC88B-205ENST00000472524 TEX49A0A1B0GTD5 131 aa8.7□□□□□ -1.02
CCDC88B-205ENST00000472524 XP32Q5T750 250 aa8.68□□□□□ -1.02
CCDC88B-205ENST00000472524 TRAV13-2A0A0B4J235 113 aa8.67□□□□□ -1.02
CCDC88B-205ENST00000472524 S100A6P06703 90 aa8.67□□□□□ -1.02
CCDC88B-205ENST00000472524 S100A2P29034 98 aa8.67□□□□□ -1.02
CCDC88B-205ENST00000472524 SNRPEP62304 92 aaKnown RBP8.67□□□□□ -1.02
CCDC88B-205ENST00000472524 HIST3H2BBQ8N257 126 aa8.67□□□□□ -1.02
CCDC88B-205ENST00000472524 PRO1933Q9H354 126 aa8.67□□□□□ -1.02
CCDC88B-205ENST00000472524 TMA7Q9Y2S6 64 aaKnown RBP8.67□□□□□ -1.02
CCDC88B-205ENST00000472524 LINC01547P58512 204 aaPredicted RBP8.66□□□□□ -1.02
CCDC88B-205ENST00000472524 SMIM11BQ8TCY0 68 aa8.66□□□□□ -1.02
CCDC88B-205ENST00000472524 HIST1H2BLQ99880 126 aa8.66□□□□□ -1.02
CCDC88B-205ENST00000472524 H7C2G1 150 aa8.65□□□□□ -1.02
CCDC88B-205ENST00000472524 SMIM29Q86T20 159 aa8.65□□□□□ -1.02
CCDC88B-205ENST00000472524 FSIP2Q5CZC0 6907 aa8.65□□□□□ -1.03
CCDC88B-205ENST00000472524 IGLV5-48A0A075B6I7 105 aa8.64□□□□□ -1.03
CCDC88B-205ENST00000472524 A4D1N5 150 aa8.64□□□□□ -1.03
CCDC88B-205ENST00000472524 HSBP1L1C9JCN9 74 aa8.64□□□□□ -1.03
CCDC88B-205ENST00000472524 CD164Q04900 197 aa8.64□□□□□ -1.03
CCDC88B-205ENST00000472524 C9orf92A6NGG3 77 aa8.63□□□□□ -1.03
CCDC88B-205ENST00000472524 NHP2Q9NX24 153 aaKnown RBP8.63□□□□□ -1.03
CCDC88B-205ENST00000472524 A0A0G2JQZ4 141 aa8.62□□□□□ -1.03
CCDC88B-205ENST00000472524 LCE2DQ5TA82 110 aaPredicted RBP8.6□□□□□ -1.03
CCDC88B-205ENST00000472524 VAMP3Q15836 100 aa8.58□□□□□ -1.04
CCDC88B-205ENST00000472524 Q5XG85 94 aa8.56□□□□□ -1.04
CCDC88B-205ENST00000472524 F8WEM9 126 aa8.55□□□□□ -1.04
CCDC88B-205ENST00000472524 SCGB1D1O95968 90 aa8.55□□□□□ -1.04
CCDC88B-205ENST00000472524 PCOTHQ58A44 107 aa8.55□□□□□ -1.04
CCDC88B-205ENST00000472524 C1orf195Q5TG92 126 aa8.55□□□□□ -1.04
CCDC88B-205ENST00000472524 LINC00575Q6W349 94 aa8.55□□□□□ -1.04
CCDC88B-205ENST00000472524 C12orf57Q99622 126 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms