RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 SOSTDC1Q6X4U4 206 aa9.34□□□□□ -0.91
CCDC28B-204ENST00000469003 FSIP2Q5CZC0 6907 aa9.33□□□□□ -0.92
CCDC28B-204ENST00000469003 TRAV23DV6A0A075B6W5 121 aa9.33□□□□□ -0.92
CCDC28B-204ENST00000469003 A0A0J9YXY3 114 aa9.33□□□□□ -0.92
CCDC28B-204ENST00000469003 JOSD1Q15040 202 aaPredicted RBP9.33□□□□□ -0.92
CCDC28B-204ENST00000469003 E9PLD3 99 aa9.32□□□□□ -0.92
CCDC28B-204ENST00000469003 ADAMTSL4-AS1Q5T5F5 129 aa9.32□□□□□ -0.92
CCDC28B-204ENST00000469003 EIF4EBP3O60516 100 aaPredicted RBP9.31□□□□□ -0.92
CCDC28B-204ENST00000469003 NPC2P61916 151 aa9.31□□□□□ -0.92
CCDC28B-204ENST00000469003 Q8N377 158 aa9.31□□□□□ -0.92
CCDC28B-204ENST00000469003 ZNF73O43830 326 aaPredicted RBP9.3□□□□□ -0.92
CCDC28B-204ENST00000469003 ASB16-AS1Q495Z4 193 aa9.29□□□□□ -0.92
CCDC28B-204ENST00000469003 SLC7A5P1Q8MH63 180 aa9.29□□□□□ -0.92
CCDC28B-204ENST00000469003 CBY1Q9Y3M2 126 aa9.29□□□□□ -0.92
CCDC28B-204ENST00000469003 SLC25A20O43772 301 aa9.28□□□□□ -0.92
CCDC28B-204ENST00000469003 C5orf52A6NGY3 159 aa9.27□□□□□ -0.93
CCDC28B-204ENST00000469003 SYS1-DBNDD2H3BUS1 97 aa9.27□□□□□ -0.93
CCDC28B-204ENST00000469003 HINT1P49773 126 aaPredicted RBP9.26□□□□□ -0.93
CCDC28B-204ENST00000469003 C9orf153Q5TBE3 101 aa9.26□□□□□ -0.93
CCDC28B-204ENST00000469003 ST20-AS1Q8NBB2 130 aa9.25□□□□□ -0.93
CCDC28B-204ENST00000469003 LINC00308Q8TCZ7 52 aa9.25□□□□□ -0.93
CCDC28B-204ENST00000469003 LITAFQ99732 161 aa9.25□□□□□ -0.93
CCDC28B-204ENST00000469003 SPANXCQ9NY87 97 aa9.25□□□□□ -0.93
CCDC28B-204ENST00000469003 TIMM17BO60830 172 aa9.24□□□□□ -0.93
CCDC28B-204ENST00000469003 SEC61BP60468 96 aaKnown RBP9.24□□□□□ -0.93
CCDC28B-204ENST00000469003 CRCT1Q9UGL9 99 aa9.24□□□□□ -0.93
CCDC28B-204ENST00000469003 LINC01545Q5VT33 79 aa9.23□□□□□ -0.93
CCDC28B-204ENST00000469003 HIST1H2BKO60814 126 aa9.22□□□□□ -0.93
CCDC28B-204ENST00000469003 HIST1H2BJP06899 126 aa9.22□□□□□ -0.93
CCDC28B-204ENST00000469003 HIST1H2BOP23527 126 aa9.22□□□□□ -0.93
CCDC28B-204ENST00000469003 HIST1H2BBP33778 126 aa9.22□□□□□ -0.93
CCDC28B-204ENST00000469003 HIST1H2BDP58876 126 aa9.22□□□□□ -0.93
CCDC28B-204ENST00000469003 HIST1H2BCP62807 126 aa9.22□□□□□ -0.93
CCDC28B-204ENST00000469003 HIST2H2BEQ16778 126 aa9.22□□□□□ -0.93
CCDC28B-204ENST00000469003 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.22□□□□□ -0.93
CCDC28B-204ENST00000469003 OR13C6PQ8NH95 151 aa9.22□□□□□ -0.93
CCDC28B-204ENST00000469003 HIST1H2BHQ93079 126 aa9.22□□□□□ -0.93
CCDC28B-204ENST00000469003 HIST1H2BNQ99877 126 aa9.22□□□□□ -0.93
CCDC28B-204ENST00000469003 HIST1H2BMQ99879 126 aa9.22□□□□□ -0.93
CCDC28B-204ENST00000469003 SPRR1BP22528 89 aa9.21□□□□□ -0.94
CCDC28B-204ENST00000469003 PET117Q6UWS5 81 aa9.21□□□□□ -0.94
CCDC28B-204ENST00000469003 ZNF815PA8K554 130 aa9.2□□□□□ -0.94
CCDC28B-204ENST00000469003 SPANXDQ9BXN6 97 aa9.2□□□□□ -0.94
CCDC28B-204ENST00000469003 DHRS4-AS1Q9P1J3 65 aa9.2□□□□□ -0.94
CCDC28B-204ENST00000469003 KRTAP4-1Q9BYQ7 146 aa9.19□□□□□ -0.94
CCDC28B-204ENST00000469003 XP32Q5T750 250 aa9.18□□□□□ -0.94
CCDC28B-204ENST00000469003 SLC25A34Q6PIV7 304 aa9.18□□□□□ -0.94
CCDC28B-204ENST00000469003 TTTY13Q9BZ97 58 aa9.17□□□□□ -0.94
CCDC28B-204ENST00000469003 LINC00518Q8N0U6 118 aa9.16□□□□□ -0.94
CCDC28B-204ENST00000469003 C3orf79P0CE67 100 aa9.15□□□□□ -0.94
CCDC28B-204ENST00000469003 ELOF1P60002 83 aaKnown RBP9.15□□□□□ -0.94
CCDC28B-204ENST00000469003 LIMD2Q9BT23 127 aa9.15□□□□□ -0.94
CCDC28B-204ENST00000469003 LAMTOR3Q9UHA4 124 aa9.15□□□□□ -0.94
CCDC28B-204ENST00000469003 COX7BP24311 80 aa9.14□□□□□ -0.95
CCDC28B-204ENST00000469003 LINC01547P58512 204 aaPredicted RBP9.14□□□□□ -0.95
CCDC28B-204ENST00000469003 C6orf99Q4VX62 202 aa9.14□□□□□ -0.95
CCDC28B-204ENST00000469003 HRCT1Q6UXD1 115 aa9.12□□□□□ -0.95
CCDC28B-204ENST00000469003 TRBV7-6A0A0J9YX20 115 aa9.1□□□□□ -0.95
CCDC28B-204ENST00000469003 KRTDAPP60985 99 aa9.1□□□□□ -0.95
CCDC28B-204ENST00000469003 TAL2Q16559 108 aa9.1□□□□□ -0.95
CCDC28B-204ENST00000469003 COA6Q5JTJ3 125 aaKnown RBP9.1□□□□□ -0.95
CCDC28B-204ENST00000469003 SCGB1D4Q6XE38 83 aa9.1□□□□□ -0.95
CCDC28B-204ENST00000469003 COPS9Q8WXC6 57 aa9.09□□□□□ -0.95
CCDC28B-204ENST00000469003 TEX49A0A1B0GTD5 131 aa9.08□□□□□ -0.96
CCDC28B-204ENST00000469003 CD164Q04900 197 aa9.08□□□□□ -0.96
CCDC28B-204ENST00000469003 Q1RN00 199 aa9.08□□□□□ -0.96
CCDC28B-204ENST00000469003 DEFB105AQ8NG35 78 aa9.08□□□□□ -0.96
CCDC28B-204ENST00000469003 A0A1B0GWB2 263 aa9.07□□□□□ -0.96
CCDC28B-204ENST00000469003 C20orf202A1L168 122 aa9.07□□□□□ -0.96
CCDC28B-204ENST00000469003 IFITM1P13164 125 aa9.07□□□□□ -0.96
CCDC28B-204ENST00000469003 ANKRD39Q53RE8 183 aa9.07□□□□□ -0.96
CCDC28B-204ENST00000469003 PRO1933Q9H354 126 aa9.07□□□□□ -0.96
CCDC28B-204ENST00000469003 Q6ZVH6 145 aa9.05□□□□□ -0.96
CCDC28B-204ENST00000469003 A6NDN8 102 aa9.04□□□□□ -0.96
CCDC28B-204ENST00000469003 SMIM29Q86T20 159 aa9.04□□□□□ -0.96
CCDC28B-204ENST00000469003 IGLV5-48A0A075B6I7 105 aa9.03□□□□□ -0.96
CCDC28B-204ENST00000469003 C9orf92A6NGG3 77 aa9.03□□□□□ -0.96
CCDC28B-204ENST00000469003 H7C2G1 150 aa9.03□□□□□ -0.96
CCDC28B-204ENST00000469003 AKR1D1P51857 326 aa9.02□□□□□ -0.97
CCDC28B-204ENST00000469003 Q5XG85 94 aa9.02□□□□□ -0.97
CCDC28B-204ENST00000469003 MUSTN1Q8IVN3 82 aa9.02□□□□□ -0.97
CCDC28B-204ENST00000469003 ATOH7Q8N100 152 aa9.02□□□□□ -0.97
CCDC28B-204ENST00000469003 PCOTHQ58A44 107 aa9.01□□□□□ -0.97
CCDC28B-204ENST00000469003 PCP2Q8IVA1 136 aa9.01□□□□□ -0.97
CCDC28B-204ENST00000469003 A4D1N5 150 aa9□□□□□ -0.97
CCDC28B-204ENST00000469003 LCE2CQ5TA81 110 aa8.99□□□□□ -0.97
CCDC28B-204ENST00000469003 TRAV13-2A0A0B4J235 113 aa8.98□□□□□ -0.97
CCDC28B-204ENST00000469003 NHP2Q9NX24 153 aaKnown RBP8.98□□□□□ -0.97
CCDC28B-204ENST00000469003 IGLV8-61A0A075B6I0 122 aa8.97□□□□□ -0.97
CCDC28B-204ENST00000469003 C1orf195Q5TG92 126 aa8.97□□□□□ -0.97
CCDC28B-204ENST00000469003 SMIM11BQ8TCY0 68 aa8.97□□□□□ -0.97
CCDC28B-204ENST00000469003 SNRPEP62304 92 aaKnown RBP8.96□□□□□ -0.98
CCDC28B-204ENST00000469003 KRTAP19-2Q3LHN2 52 aa8.96□□□□□ -0.98
CCDC28B-204ENST00000469003 A0A0G2JQZ4 141 aa8.95□□□□□ -0.98
CCDC28B-204ENST00000469003 VAMP3Q15836 100 aa8.9□□□□□ -0.98
CCDC28B-204ENST00000469003 F8WEM9 126 aa8.89□□□□□ -0.99
CCDC28B-204ENST00000469003 TCL1BO95988 128 aa8.89□□□□□ -0.99
CCDC28B-204ENST00000469003 MT1HP80294 61 aa8.89□□□□□ -0.99
CCDC28B-204ENST00000469003 LINC00575Q6W349 94 aa8.89□□□□□ -0.99
CCDC28B-204ENST00000469003 RPL37P61927 97 aaKnown RBP8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 213.2 ms