RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 SOSTDC1Q6X4U4 206 aa10.71□□□□□ -0.69
COL9A3-206ENST00000466532 SLC25A20O43772 301 aa10.7□□□□□ -0.7
COL9A3-206ENST00000466532 SEC61BP60468 96 aaKnown RBP10.7□□□□□ -0.7
COL9A3-206ENST00000466532 C9orf153Q5TBE3 101 aa10.7□□□□□ -0.7
COL9A3-206ENST00000466532 A0A0J9YXY3 114 aa10.69□□□□□ -0.7
COL9A3-206ENST00000466532 ZNF73O43830 326 aaPredicted RBP10.69□□□□□ -0.7
COL9A3-206ENST00000466532 EIF4EBP3O60516 100 aaPredicted RBP10.69□□□□□ -0.7
COL9A3-206ENST00000466532 ADAMTSL4-AS1Q5T5F5 129 aa10.69□□□□□ -0.7
COL9A3-206ENST00000466532 KRTAP4-1Q9BYQ7 146 aa10.67□□□□□ -0.7
COL9A3-206ENST00000466532 E9PLD3 99 aa10.66□□□□□ -0.7
COL9A3-206ENST00000466532 ST20-AS1Q8NBB2 130 aa10.66□□□□□ -0.7
COL9A3-206ENST00000466532 HINT1P49773 126 aaPredicted RBP10.64□□□□□ -0.71
COL9A3-206ENST00000466532 CBY1Q9Y3M2 126 aa10.64□□□□□ -0.71
COL9A3-206ENST00000466532 COLCA2A8K830 154 aa10.63□□□□□ -0.71
COL9A3-206ENST00000466532 LINC01547P58512 204 aaPredicted RBP10.63□□□□□ -0.71
COL9A3-206ENST00000466532 C5orf52A6NGY3 159 aa10.62□□□□□ -0.71
COL9A3-206ENST00000466532 XP32Q5T750 250 aa10.6□□□□□ -0.71
COL9A3-206ENST00000466532 OR13C6PQ8NH95 151 aa10.6□□□□□ -0.71
COL9A3-206ENST00000466532 LINC00308Q8TCZ7 52 aa10.6□□□□□ -0.71
COL9A3-206ENST00000466532 SPANXCQ9NY87 97 aa10.6□□□□□ -0.71
COL9A3-206ENST00000466532 KRTAP9-6A0A140TA67 174 aa10.59□□□□□ -0.71
COL9A3-206ENST00000466532 LITAFQ99732 161 aa10.59□□□□□ -0.71
COL9A3-206ENST00000466532 SYS1-DBNDD2H3BUS1 97 aa10.58□□□□□ -0.72
COL9A3-206ENST00000466532 TIMM17BO60830 172 aa10.56□□□□□ -0.72
COL9A3-206ENST00000466532 SPRR1BP22528 89 aa10.56□□□□□ -0.72
COL9A3-206ENST00000466532 SLC25A34Q6PIV7 304 aa10.56□□□□□ -0.72
COL9A3-206ENST00000466532 SLC7A5P1Q8MH63 180 aa10.56□□□□□ -0.72
COL9A3-206ENST00000466532 DHRS4-AS1Q9P1J3 65 aa10.56□□□□□ -0.72
COL9A3-206ENST00000466532 HRCT1Q6UXD1 115 aa10.55□□□□□ -0.72
COL9A3-206ENST00000466532 LIMD2Q9BT23 127 aa10.54□□□□□ -0.72
COL9A3-206ENST00000466532 SPANXDQ9BXN6 97 aa10.54□□□□□ -0.72
COL9A3-206ENST00000466532 ZNF815PA8K554 130 aa10.53□□□□□ -0.72
COL9A3-206ENST00000466532 LINC01545Q5VT33 79 aa10.53□□□□□ -0.72
COL9A3-206ENST00000466532 LAMTOR3Q9UHA4 124 aa10.53□□□□□ -0.72
COL9A3-206ENST00000466532 HIST1H2BKO60814 126 aa10.51□□□□□ -0.73
COL9A3-206ENST00000466532 HIST1H2BJP06899 126 aa10.51□□□□□ -0.73
COL9A3-206ENST00000466532 HIST1H2BOP23527 126 aa10.51□□□□□ -0.73
COL9A3-206ENST00000466532 COX7BP24311 80 aa10.51□□□□□ -0.73
COL9A3-206ENST00000466532 HIST1H2BBP33778 126 aa10.51□□□□□ -0.73
COL9A3-206ENST00000466532 HIST1H2BDP58876 126 aa10.51□□□□□ -0.73
COL9A3-206ENST00000466532 ELOF1P60002 83 aaKnown RBP10.51□□□□□ -0.73
COL9A3-206ENST00000466532 HIST1H2BCP62807 126 aa10.51□□□□□ -0.73
COL9A3-206ENST00000466532 HIST2H2BEQ16778 126 aa10.51□□□□□ -0.73
COL9A3-206ENST00000466532 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.51□□□□□ -0.73
COL9A3-206ENST00000466532 HIST1H2BHQ93079 126 aa10.51□□□□□ -0.73
COL9A3-206ENST00000466532 HIST1H2BNQ99877 126 aa10.51□□□□□ -0.73
COL9A3-206ENST00000466532 HIST1H2BMQ99879 126 aa10.51□□□□□ -0.73
COL9A3-206ENST00000466532 TTTY13Q9BZ97 58 aa10.51□□□□□ -0.73
COL9A3-206ENST00000466532 C6orf99Q4VX62 202 aa10.5□□□□□ -0.73
COL9A3-206ENST00000466532 PET117Q6UWS5 81 aa10.5□□□□□ -0.73
COL9A3-206ENST00000466532 LINC00518Q8N0U6 118 aa10.5□□□□□ -0.73
COL9A3-206ENST00000466532 C9orf92A6NGG3 77 aa10.47□□□□□ -0.73
COL9A3-206ENST00000466532 TAL2Q16559 108 aa10.47□□□□□ -0.73
COL9A3-206ENST00000466532 Q1RN00 199 aa10.47□□□□□ -0.73
COL9A3-206ENST00000466532 DEFB105AQ8NG35 78 aa10.47□□□□□ -0.73
COL9A3-206ENST00000466532 C3orf79P0CE67 100 aa10.44□□□□□ -0.74
COL9A3-206ENST00000466532 PCOTHQ58A44 107 aa10.44□□□□□ -0.74
COL9A3-206ENST00000466532 TEX49A0A1B0GTD5 131 aa10.43□□□□□ -0.74
COL9A3-206ENST00000466532 CD164Q04900 197 aa10.43□□□□□ -0.74
COL9A3-206ENST00000466532 PRO1933Q9H354 126 aa10.43□□□□□ -0.74
COL9A3-206ENST00000466532 LCE2CQ5TA81 110 aa10.42□□□□□ -0.74
COL9A3-206ENST00000466532 SCGB1D4Q6XE38 83 aa10.42□□□□□ -0.74
COL9A3-206ENST00000466532 TRBV7-6A0A0J9YX20 115 aa10.41□□□□□ -0.74
COL9A3-206ENST00000466532 LCE2DQ5TA82 110 aaPredicted RBP10.41□□□□□ -0.74
COL9A3-206ENST00000466532 IGLV8-61A0A075B6I0 122 aa10.4□□□□□ -0.74
COL9A3-206ENST00000466532 H7C2G1 150 aa10.4□□□□□ -0.74
COL9A3-206ENST00000466532 KRTDAPP60985 99 aa10.4□□□□□ -0.74
COL9A3-206ENST00000466532 COPS9Q8WXC6 57 aa10.39□□□□□ -0.75
COL9A3-206ENST00000466532 A0A1B0GWB2 263 aa10.38□□□□□ -0.75
COL9A3-206ENST00000466532 AKR1D1P51857 326 aa10.38□□□□□ -0.75
COL9A3-206ENST00000466532 KRTAP19-2Q3LHN2 52 aa10.38□□□□□ -0.75
COL9A3-206ENST00000466532 SMIM29Q86T20 159 aa10.38□□□□□ -0.75
COL9A3-206ENST00000466532 A6NDN8 102 aa10.37□□□□□ -0.75
COL9A3-206ENST00000466532 IFITM1P13164 125 aa10.37□□□□□ -0.75
COL9A3-206ENST00000466532 IGLV5-48A0A075B6I7 105 aa10.36□□□□□ -0.75
COL9A3-206ENST00000466532 ANKRD39Q53RE8 183 aa10.36□□□□□ -0.75
COL9A3-206ENST00000466532 Q5XG85 94 aa10.35□□□□□ -0.75
COL9A3-206ENST00000466532 A0A0G2JQZ4 141 aa10.34□□□□□ -0.75
COL9A3-206ENST00000466532 C20orf202A1L168 122 aa10.34□□□□□ -0.75
COL9A3-206ENST00000466532 Q6ZVH6 145 aa10.34□□□□□ -0.75
COL9A3-206ENST00000466532 MUSTN1Q8IVN3 82 aa10.34□□□□□ -0.75
COL9A3-206ENST00000466532 COA6Q5JTJ3 125 aaKnown RBP10.33□□□□□ -0.76
COL9A3-206ENST00000466532 C1orf195Q5TG92 126 aa10.33□□□□□ -0.76
COL9A3-206ENST00000466532 FSIP2Q5CZC0 6907 aa10.33□□□□□ -0.76
COL9A3-206ENST00000466532 MT1HP80294 61 aa10.32□□□□□ -0.76
COL9A3-206ENST00000466532 ATOH7Q8N100 152 aa10.32□□□□□ -0.76
COL9A3-206ENST00000466532 A4D1N5 150 aa10.31□□□□□ -0.76
COL9A3-206ENST00000466532 PCP2Q8IVA1 136 aa10.3□□□□□ -0.76
COL9A3-206ENST00000466532 NHP2Q9NX24 153 aaKnown RBP10.29□□□□□ -0.76
COL9A3-206ENST00000466532 TRAV13-2A0A0B4J235 113 aa10.28□□□□□ -0.76
COL9A3-206ENST00000466532 SMIM11BQ8TCY0 68 aa10.28□□□□□ -0.76
COL9A3-206ENST00000466532 CFC1BP0CG36 223 aa10.26□□□□□ -0.77
COL9A3-206ENST00000466532 RPL37P61927 97 aaKnown RBP10.25□□□□□ -0.77
COL9A3-206ENST00000466532 CRCT1Q9UGL9 99 aa10.24□□□□□ -0.77
COL9A3-206ENST00000466532 TCL1BO95988 128 aa10.23□□□□□ -0.77
COL9A3-206ENST00000466532 F8WEM9 126 aa10.22□□□□□ -0.77
COL9A3-206ENST00000466532 SNRPEP62304 92 aaKnown RBP10.2□□□□□ -0.78
COL9A3-206ENST00000466532 VAMP3Q15836 100 aa10.2□□□□□ -0.78
COL9A3-206ENST00000466532 LINC00575Q6W349 94 aa10.18□□□□□ -0.78
COL9A3-206ENST00000466532 LORP23490 312 aaPredicted RBP10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms