RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 HIST2H2BEQ16778 126 aa4.16□□□□□ -1.74
PTPRF-210ENST00000463041 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.16□□□□□ -1.74
PTPRF-210ENST00000463041 GAGE2AQ6NT46 116 aa4.16□□□□□ -1.74
PTPRF-210ENST00000463041 PET117Q6UWS5 81 aa4.16□□□□□ -1.74
PTPRF-210ENST00000463041 Q6ZRX8 168 aa4.16□□□□□ -1.74
PTPRF-210ENST00000463041 Q8NBF4 154 aa4.16□□□□□ -1.74
PTPRF-210ENST00000463041 HIST1H2BHQ93079 126 aa4.16□□□□□ -1.74
PTPRF-210ENST00000463041 HIST1H2BNQ99877 126 aa4.16□□□□□ -1.74
PTPRF-210ENST00000463041 HIST1H2BMQ99879 126 aa4.16□□□□□ -1.74
PTPRF-210ENST00000463041 TRAV23DV6A0A075B6W5 121 aa4.15□□□□□ -1.75
PTPRF-210ENST00000463041 TIMM17BO60830 172 aa4.15□□□□□ -1.75
PTPRF-210ENST00000463041 LINC01545Q5VT33 79 aa4.15□□□□□ -1.75
PTPRF-210ENST00000463041 SOSTDC1Q6X4U4 206 aa4.15□□□□□ -1.75
PTPRF-210ENST00000463041 Q9BRP9 147 aa4.15□□□□□ -1.75
PTPRF-210ENST00000463041 FAT4Q6V0I7 4981 aa4.14□□□□□ -1.75
PTPRF-210ENST00000463041 ZNF73O43830 326 aaPredicted RBP4.14□□□□□ -1.75
PTPRF-210ENST00000463041 EIF4EBP3O60516 100 aaPredicted RBP4.14□□□□□ -1.75
PTPRF-210ENST00000463041 NPC2P61916 151 aa4.14□□□□□ -1.75
PTPRF-210ENST00000463041 RPS29P62273 56 aaKnown RBP4.14□□□□□ -1.75
PTPRF-210ENST00000463041 LINC00308Q8TCZ7 52 aa4.14□□□□□ -1.75
PTPRF-210ENST00000463041 IGLV9-49A0A0B4J1Y8 123 aa4.13□□□□□ -1.75
PTPRF-210ENST00000463041 COA6Q5JTJ3 125 aaKnown RBP4.13□□□□□ -1.75
PTPRF-210ENST00000463041 LINC00518Q8N0U6 118 aa4.13□□□□□ -1.75
PTPRF-210ENST00000463041 LITAFQ99732 161 aa4.13□□□□□ -1.75
PTPRF-210ENST00000463041 SPANXCQ9NY87 97 aa4.13□□□□□ -1.75
PTPRF-210ENST00000463041 ZNF815PA8K554 130 aa4.12□□□□□ -1.75
PTPRF-210ENST00000463041 C3orf79P0CE67 100 aa4.12□□□□□ -1.75
PTPRF-210ENST00000463041 MOBPQ13875 183 aa4.12□□□□□ -1.75
PTPRF-210ENST00000463041 OR13C6PQ8NH95 151 aa4.12□□□□□ -1.75
PTPRF-210ENST00000463041 SLC25A20O43772 301 aa4.11□□□□□ -1.75
PTPRF-210ENST00000463041 AKR1D1P51857 326 aa4.11□□□□□ -1.75
PTPRF-210ENST00000463041 KRTAP13-3Q3SY46 172 aa4.11□□□□□ -1.75
PTPRF-210ENST00000463041 SPANXDQ9BXN6 97 aa4.11□□□□□ -1.75
PTPRF-210ENST00000463041 DHRS4-AS1Q9P1J3 65 aa4.11□□□□□ -1.75
PTPRF-210ENST00000463041 SPRR1BP22528 89 aa4.1□□□□□ -1.75
PTPRF-210ENST00000463041 KRTDAPP60985 99 aa4.1□□□□□ -1.75
PTPRF-210ENST00000463041 SLC25A34Q6PIV7 304 aa4.1□□□□□ -1.75
PTPRF-210ENST00000463041 Q8N377 158 aa4.1□□□□□ -1.75
PTPRF-210ENST00000463041 COPS9Q8WXC6 57 aa4.1□□□□□ -1.75
PTPRF-210ENST00000463041 C20orf202A1L168 122 aa4.09□□□□□ -1.75
PTPRF-210ENST00000463041 IFITM1P13164 125 aa4.09□□□□□ -1.75
PTPRF-210ENST00000463041 C9orf153Q5TBE3 101 aa4.09□□□□□ -1.75
PTPRF-210ENST00000463041 Q6ZVH6 145 aa4.09□□□□□ -1.75
PTPRF-210ENST00000463041 ST20-AS1Q8NBB2 130 aa4.09□□□□□ -1.75
PTPRF-210ENST00000463041 TTTY13Q9BZ97 58 aa4.09□□□□□ -1.75
PTPRF-210ENST00000463041 TRBV7-6A0A0J9YX20 115 aa4.08□□□□□ -1.76
PTPRF-210ENST00000463041 COX7BP24311 80 aa4.08□□□□□ -1.76
PTPRF-210ENST00000463041 ASB16-AS1Q495Z4 193 aa4.08□□□□□ -1.76
PTPRF-210ENST00000463041 SCGB1D4Q6XE38 83 aa4.08□□□□□ -1.76
PTPRF-210ENST00000463041 LAMTOR3Q9UHA4 124 aa4.08□□□□□ -1.76
PTPRF-210ENST00000463041 ELOF1P60002 83 aaKnown RBP4.07□□□□□ -1.76
PTPRF-210ENST00000463041 SEC61BP60468 96 aaKnown RBP4.07□□□□□ -1.76
PTPRF-210ENST00000463041 SNRPEP62304 92 aaKnown RBP4.07□□□□□ -1.76
PTPRF-210ENST00000463041 TAL2Q16559 108 aa4.07□□□□□ -1.76
PTPRF-210ENST00000463041 C6orf99Q4VX62 202 aa4.07□□□□□ -1.76
PTPRF-210ENST00000463041 TEX49A0A1B0GTD5 131 aa4.06□□□□□ -1.76
PTPRF-210ENST00000463041 ANKRD39Q53RE8 183 aa4.06□□□□□ -1.76
PTPRF-210ENST00000463041 LCE2AQ5TA79 106 aaPredicted RBP4.06□□□□□ -1.76
PTPRF-210ENST00000463041 MUSTN1Q8IVN3 82 aa4.06□□□□□ -1.76
PTPRF-210ENST00000463041 A0A1B0GWB2 263 aa4.05□□□□□ -1.76
PTPRF-210ENST00000463041 A4D1N5 150 aa4.05□□□□□ -1.76
PTPRF-210ENST00000463041 A6NDN8 102 aa4.05□□□□□ -1.76
PTPRF-210ENST00000463041 CD164Q04900 197 aa4.05□□□□□ -1.76
PTPRF-210ENST00000463041 LIMD2Q9BT23 127 aa4.05□□□□□ -1.76
PTPRF-210ENST00000463041 TRAV13-2A0A0B4J235 113 aa4.04□□□□□ -1.76
PTPRF-210ENST00000463041 PCP2Q8IVA1 136 aa4.04□□□□□ -1.76
PTPRF-210ENST00000463041 ATOH7Q8N100 152 aa4.04□□□□□ -1.76
PTPRF-210ENST00000463041 DEFB105AQ8NG35 78 aa4.04□□□□□ -1.76
PTPRF-210ENST00000463041 PRO1933Q9H354 126 aa4.04□□□□□ -1.76
PTPRF-210ENST00000463041 XP32Q5T750 250 aa4.03□□□□□ -1.76
PTPRF-210ENST00000463041 HRCT1Q6UXD1 115 aa4.03□□□□□ -1.76
PTPRF-210ENST00000463041 IGLV5-48A0A075B6I7 105 aa4.02□□□□□ -1.77
PTPRF-210ENST00000463041 H7C2G1 150 aa4.02□□□□□ -1.77
PTPRF-210ENST00000463041 VAMP3Q15836 100 aa4.02□□□□□ -1.77
PTPRF-210ENST00000463041 Q1RN00 199 aa4.02□□□□□ -1.77
PTPRF-210ENST00000463041 SMIM29Q86T20 159 aa4.02□□□□□ -1.77
PTPRF-210ENST00000463041 NHP2Q9NX24 153 aaKnown RBP4.02□□□□□ -1.77
PTPRF-210ENST00000463041 HSBP1L1C9JCN9 74 aa4.01□□□□□ -1.77
PTPRF-210ENST00000463041 S100A2P29034 98 aa4.01□□□□□ -1.77
PTPRF-210ENST00000463041 LINC01547P58512 204 aaPredicted RBP4.01□□□□□ -1.77
PTPRF-210ENST00000463041 Q5XG85 94 aa4.01□□□□□ -1.77
PTPRF-210ENST00000463041 HIST3H2BBQ8N257 126 aa4.01□□□□□ -1.77
PTPRF-210ENST00000463041 SMIM11BQ8TCY0 68 aa4.01□□□□□ -1.77
PTPRF-210ENST00000463041 S100A1P23297 94 aa4□□□□□ -1.77
PTPRF-210ENST00000463041 HIST1H2BLQ99880 126 aa4□□□□□ -1.77
PTPRF-210ENST00000463041 KRTAP4-1Q9BYQ7 146 aa4□□□□□ -1.77
PTPRF-210ENST00000463041 S100A6P06703 90 aa3.99□□□□□ -1.77
PTPRF-210ENST00000463041 LINC00575Q6W349 94 aa3.98□□□□□ -1.77
PTPRF-210ENST00000463041 KRTAP9-2Q9BYQ4 174 aa3.98□□□□□ -1.77
PTPRF-210ENST00000463041 hADV29S1A0JD25 119 aa3.97□□□□□ -1.77
PTPRF-210ENST00000463041 TCL1BO95988 128 aa3.97□□□□□ -1.77
PTPRF-210ENST00000463041 C1orf195Q5TG92 126 aa3.97□□□□□ -1.77
PTPRF-210ENST00000463041 C9orf92A6NGG3 77 aa3.96□□□□□ -1.78
PTPRF-210ENST00000463041 F8WEM9 126 aa3.96□□□□□ -1.78
PTPRF-210ENST00000463041 SCGB1D1O95968 90 aa3.96□□□□□ -1.78
PTPRF-210ENST00000463041 A0A0G2JQZ4 141 aa3.95□□□□□ -1.78
PTPRF-210ENST00000463041 PCOTHQ58A44 107 aa3.95□□□□□ -1.78
PTPRF-210ENST00000463041 Q6JHZ5 121 aa3.95□□□□□ -1.78
PTPRF-210ENST00000463041 HIST1H4GQ99525 98 aa3.95□□□□□ -1.78
PTPRF-210ENST00000463041 IGLV8-61A0A075B6I0 122 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms