RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 ZNF73O43830 326 aaPredicted RBP12.82□□□□□ -0.36
PTPN4-207ENST00000460162 NPC2P61916 151 aa12.82□□□□□ -0.36
PTPN4-207ENST00000460162 ADAMTSL4-AS1Q5T5F5 129 aa12.81□□□□□ -0.36
PTPN4-207ENST00000460162 Q8N377 158 aa12.81□□□□□ -0.36
PTPN4-207ENST00000460162 CBY1Q9Y3M2 126 aa12.81□□□□□ -0.36
PTPN4-207ENST00000460162 EIF4EBP3O60516 100 aaPredicted RBP12.8□□□□□ -0.36
PTPN4-207ENST00000460162 ASB16-AS1Q495Z4 193 aa12.78□□□□□ -0.36
PTPN4-207ENST00000460162 SLC7A5P1Q8MH63 180 aa12.78□□□□□ -0.36
PTPN4-207ENST00000460162 C5orf52A6NGY3 159 aa12.77□□□□□ -0.37
PTPN4-207ENST00000460162 SYS1-DBNDD2H3BUS1 97 aa12.77□□□□□ -0.37
PTPN4-207ENST00000460162 SLC25A20O43772 301 aa12.77□□□□□ -0.37
PTPN4-207ENST00000460162 C9orf153Q5TBE3 101 aa12.76□□□□□ -0.37
PTPN4-207ENST00000460162 KRTAP9-2Q9BYQ4 174 aa12.76□□□□□ -0.37
PTPN4-207ENST00000460162 SPANXCQ9NY87 97 aa12.76□□□□□ -0.37
PTPN4-207ENST00000460162 HINT1P49773 126 aaPredicted RBP12.75□□□□□ -0.37
PTPN4-207ENST00000460162 LITAFQ99732 161 aa12.75□□□□□ -0.37
PTPN4-207ENST00000460162 TIMM17BO60830 172 aa12.74□□□□□ -0.37
PTPN4-207ENST00000460162 LINC00308Q8TCZ7 52 aa12.73□□□□□ -0.37
PTPN4-207ENST00000460162 HIST1H2BKO60814 126 aa12.72□□□□□ -0.37
PTPN4-207ENST00000460162 HIST1H2BJP06899 126 aa12.72□□□□□ -0.37
PTPN4-207ENST00000460162 HIST1H2BOP23527 126 aa12.72□□□□□ -0.37
PTPN4-207ENST00000460162 HIST1H2BBP33778 126 aa12.72□□□□□ -0.37
PTPN4-207ENST00000460162 HIST1H2BDP58876 126 aa12.72□□□□□ -0.37
PTPN4-207ENST00000460162 HIST1H2BCP62807 126 aa12.72□□□□□ -0.37
PTPN4-207ENST00000460162 HIST2H2BEQ16778 126 aa12.72□□□□□ -0.37
PTPN4-207ENST00000460162 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.72□□□□□ -0.37
PTPN4-207ENST00000460162 LINC01545Q5VT33 79 aa12.72□□□□□ -0.37
PTPN4-207ENST00000460162 ST20-AS1Q8NBB2 130 aa12.72□□□□□ -0.37
PTPN4-207ENST00000460162 HIST1H2BHQ93079 126 aa12.72□□□□□ -0.37
PTPN4-207ENST00000460162 HIST1H2BNQ99877 126 aa12.72□□□□□ -0.37
PTPN4-207ENST00000460162 HIST1H2BMQ99879 126 aa12.72□□□□□ -0.37
PTPN4-207ENST00000460162 SEC61BP60468 96 aaKnown RBP12.71□□□□□ -0.37
PTPN4-207ENST00000460162 PET117Q6UWS5 81 aa12.69□□□□□ -0.38
PTPN4-207ENST00000460162 SPANXDQ9BXN6 97 aa12.69□□□□□ -0.38
PTPN4-207ENST00000460162 ZNF815PA8K554 130 aa12.68□□□□□ -0.38
PTPN4-207ENST00000460162 OR13C6PQ8NH95 151 aa12.68□□□□□ -0.38
PTPN4-207ENST00000460162 DHRS4-AS1Q9P1J3 65 aa12.68□□□□□ -0.38
PTPN4-207ENST00000460162 SPRR1BP22528 89 aa12.67□□□□□ -0.38
PTPN4-207ENST00000460162 SLC25A34Q6PIV7 304 aa12.67□□□□□ -0.38
PTPN4-207ENST00000460162 XP32Q5T750 250 aa12.64□□□□□ -0.39
PTPN4-207ENST00000460162 ELOF1P60002 83 aaKnown RBP12.62□□□□□ -0.39
PTPN4-207ENST00000460162 LINC00518Q8N0U6 118 aa12.62□□□□□ -0.39
PTPN4-207ENST00000460162 LIMD2Q9BT23 127 aa12.62□□□□□ -0.39
PTPN4-207ENST00000460162 TTTY13Q9BZ97 58 aa12.61□□□□□ -0.39
PTPN4-207ENST00000460162 C3orf79P0CE67 100 aa12.6□□□□□ -0.39
PTPN4-207ENST00000460162 KRTAP4-1Q9BYQ7 146 aa12.6□□□□□ -0.39
PTPN4-207ENST00000460162 COX7BP24311 80 aa12.59□□□□□ -0.39
PTPN4-207ENST00000460162 C6orf99Q4VX62 202 aa12.59□□□□□ -0.39
PTPN4-207ENST00000460162 LAMTOR3Q9UHA4 124 aa12.59□□□□□ -0.39
PTPN4-207ENST00000460162 LINC01547P58512 204 aaPredicted RBP12.56□□□□□ -0.4
PTPN4-207ENST00000460162 COA6Q5JTJ3 125 aaKnown RBP12.56□□□□□ -0.4
PTPN4-207ENST00000460162 SCGB1D4Q6XE38 83 aa12.55□□□□□ -0.4
PTPN4-207ENST00000460162 COPS9Q8WXC6 57 aa12.55□□□□□ -0.4
PTPN4-207ENST00000460162 KRTDAPP60985 99 aa12.54□□□□□ -0.4
PTPN4-207ENST00000460162 TRBV7-6A0A0J9YX20 115 aa12.53□□□□□ -0.4
PTPN4-207ENST00000460162 C20orf202A1L168 122 aa12.52□□□□□ -0.41
PTPN4-207ENST00000460162 HRCT1Q6UXD1 115 aa12.52□□□□□ -0.41
PTPN4-207ENST00000460162 CD164Q04900 197 aa12.51□□□□□ -0.41
PTPN4-207ENST00000460162 TAL2Q16559 108 aa12.51□□□□□ -0.41
PTPN4-207ENST00000460162 TEX49A0A1B0GTD5 131 aa12.5□□□□□ -0.41
PTPN4-207ENST00000460162 A0A1B0GWB2 263 aa12.5□□□□□ -0.41
PTPN4-207ENST00000460162 IFITM1P13164 125 aa12.5□□□□□ -0.41
PTPN4-207ENST00000460162 Q1RN00 199 aa12.5□□□□□ -0.41
PTPN4-207ENST00000460162 Q6ZVH6 145 aa12.49□□□□□ -0.41
PTPN4-207ENST00000460162 ANKRD39Q53RE8 183 aa12.48□□□□□ -0.41
PTPN4-207ENST00000460162 PRO1933Q9H354 126 aa12.48□□□□□ -0.41
PTPN4-207ENST00000460162 DEFB105AQ8NG35 78 aa12.47□□□□□ -0.41
PTPN4-207ENST00000460162 IGLV5-48A0A075B6I7 105 aa12.45□□□□□ -0.42
PTPN4-207ENST00000460162 AKR1D1P51857 326 aa12.45□□□□□ -0.42
PTPN4-207ENST00000460162 A6NDN8 102 aa12.44□□□□□ -0.42
PTPN4-207ENST00000460162 H7C2G1 150 aa12.43□□□□□ -0.42
PTPN4-207ENST00000460162 SMIM29Q86T20 159 aa12.43□□□□□ -0.42
PTPN4-207ENST00000460162 A4D1N5 150 aa12.42□□□□□ -0.42
PTPN4-207ENST00000460162 Q5XG85 94 aa12.42□□□□□ -0.42
PTPN4-207ENST00000460162 ATOH7Q8N100 152 aa12.42□□□□□ -0.42
PTPN4-207ENST00000460162 C9orf92A6NGG3 77 aa12.41□□□□□ -0.42
PTPN4-207ENST00000460162 MUSTN1Q8IVN3 82 aa12.41□□□□□ -0.42
PTPN4-207ENST00000460162 PCP2Q8IVA1 136 aa12.4□□□□□ -0.42
PTPN4-207ENST00000460162 NHP2Q9NX24 153 aaKnown RBP12.4□□□□□ -0.42
PTPN4-207ENST00000460162 KRTAP9-6A0A140TA67 174 aa12.39□□□□□ -0.43
PTPN4-207ENST00000460162 TRAV13-2A0A0B4J235 113 aa12.38□□□□□ -0.43
PTPN4-207ENST00000460162 PCOTHQ58A44 107 aa12.37□□□□□ -0.43
PTPN4-207ENST00000460162 SNRPEP62304 92 aaKnown RBP12.36□□□□□ -0.43
PTPN4-207ENST00000460162 LCE2CQ5TA81 110 aa12.34□□□□□ -0.43
PTPN4-207ENST00000460162 SMIM11BQ8TCY0 68 aa12.34□□□□□ -0.43
PTPN4-207ENST00000460162 IGLV8-61A0A075B6I0 122 aa12.33□□□□□ -0.44
PTPN4-207ENST00000460162 C1orf195Q5TG92 126 aa12.32□□□□□ -0.44
PTPN4-207ENST00000460162 KRTAP19-2Q3LHN2 52 aa12.31□□□□□ -0.44
PTPN4-207ENST00000460162 A0A0G2JQZ4 141 aa12.29□□□□□ -0.44
PTPN4-207ENST00000460162 LCE2DQ5TA82 110 aaPredicted RBP12.28□□□□□ -0.44
PTPN4-207ENST00000460162 F8WEM9 126 aa12.26□□□□□ -0.45
PTPN4-207ENST00000460162 VAMP3Q15836 100 aa12.26□□□□□ -0.45
PTPN4-207ENST00000460162 TCL1BO95988 128 aa12.25□□□□□ -0.45
PTPN4-207ENST00000460162 HSBP1L1C9JCN9 74 aa12.23□□□□□ -0.45
PTPN4-207ENST00000460162 RPL37P61927 97 aaKnown RBP12.22□□□□□ -0.45
PTPN4-207ENST00000460162 MT1HP80294 61 aa12.22□□□□□ -0.45
PTPN4-207ENST00000460162 LINC00575Q6W349 94 aa12.22□□□□□ -0.45
PTPN4-207ENST00000460162 HIST3H2BBQ8N257 126 aa12.22□□□□□ -0.45
PTPN4-207ENST00000460162 HIST1H2BLQ99880 126 aa12.21□□□□□ -0.45
PTPN4-207ENST00000460162 S100A2P29034 98 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms