RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 SPRR4Q96PI1 79 aa4.52□□□□□ -1.69
CD44-211ENST00000442151 SPINK1P00995 79 aa4.51□□□□□ -1.69
CD44-211ENST00000442151 JOSD1Q15040 202 aaPredicted RBP4.51□□□□□ -1.69
CD44-211ENST00000442151 SSBP3-AS1Q7Z2R9 100 aa4.51□□□□□ -1.69
CD44-211ENST00000442151 SMCR5Q8TEV8 140 aa4.51□□□□□ -1.69
CD44-211ENST00000442151 LGALS3P17931 250 aaKnown RBP4.51□□□□□ -1.69
CD44-211ENST00000442151 LPAP08519 4548 aa4.5□□□□□ -1.69
CD44-211ENST00000442151 LOC107984156A0A0G2JMH3 177 aa4.5□□□□□ -1.69
CD44-211ENST00000442151 C5orf52A6NGY3 159 aa4.5□□□□□ -1.69
CD44-211ENST00000442151 DPM2O94777 84 aa4.5□□□□□ -1.69
CD44-211ENST00000442151 SPRR1AP35321 89 aa4.5□□□□□ -1.69
CD44-211ENST00000442151 S100A7L2Q5SY68 101 aa4.5□□□□□ -1.69
CD44-211ENST00000442151 ARL17AQ8IVW1 177 aa4.5□□□□□ -1.69
CD44-211ENST00000442151 FAM19A2Q8N3H0 131 aa4.5□□□□□ -1.69
CD44-211ENST00000442151 NCR3O14931 201 aa4.49□□□□□ -1.69
CD44-211ENST00000442151 NDUFC2O95298 119 aa4.49□□□□□ -1.69
CD44-211ENST00000442151 C9orf118A6NHY6 69 aa4.49□□□□□ -1.69
CD44-211ENST00000442151 H0Y8G0 127 aa4.49□□□□□ -1.69
CD44-211ENST00000442151 J3QQQ9 107 aa4.49□□□□□ -1.69
CD44-211ENST00000442151 IGKCP01834 107 aa4.49□□□□□ -1.69
CD44-211ENST00000442151 DDTP30046 118 aa4.49□□□□□ -1.69
CD44-211ENST00000442151 YPEL4Q96NS1 127 aa4.49□□□□□ -1.69
CD44-211ENST00000442151 PPDPFQ9H3Y8 114 aa4.49□□□□□ -1.69
CD44-211ENST00000442151 SPANXB1Q9NS25 103 aaPredicted RBP4.49□□□□□ -1.69
CD44-211ENST00000442151 TRBV10-3A0A0K0K1G6 114 aa4.48□□□□□ -1.69
CD44-211ENST00000442151 RPS29P62273 56 aaKnown RBP4.48□□□□□ -1.69
CD44-211ENST00000442151 C3orf22Q8N5N4 141 aa4.48□□□□□ -1.69
CD44-211ENST00000442151 TRGC2P03986 189 aa4.47□□□□□ -1.69
CD44-211ENST00000442151 LINC00483Q53H64 154 aa4.47□□□□□ -1.69
CD44-211ENST00000442151 SLC25A34Q6PIV7 304 aa4.47□□□□□ -1.69
CD44-211ENST00000442151 RETNLBQ9BQ08 111 aa4.47□□□□□ -1.69
CD44-211ENST00000442151 MUC2Q02817 5179 aa4.46□□□□□ -1.69
CD44-211ENST00000442151 GAGE2AQ6NT46 116 aa4.46□□□□□ -1.69
CD44-211ENST00000442151 Q8NBF4 154 aa4.46□□□□□ -1.69
CD44-211ENST00000442151 Q8NDZ9 215 aa4.46□□□□□ -1.69
CD44-211ENST00000442151 SLC25A20O43772 301 aa4.46□□□□□ -1.7
CD44-211ENST00000442151 SERF1AO75920 110 aa4.46□□□□□ -1.7
CD44-211ENST00000442151 FABP4P15090 132 aa4.46□□□□□ -1.7
CD44-211ENST00000442151 KRTAP5-11Q6L8G4 156 aa4.46□□□□□ -1.7
CD44-211ENST00000442151 LOC105371267A0A1B0GV96 52 aa4.45□□□□□ -1.7
CD44-211ENST00000442151 KRTAP4-16G5E9R7 235 aaPredicted RBP4.45□□□□□ -1.7
CD44-211ENST00000442151 DAND5Q8N907 189 aa4.45□□□□□ -1.7
CD44-211ENST00000442151 COPS9Q8WXC6 57 aa4.45□□□□□ -1.7
CD44-211ENST00000442151 SEC61BP60468 96 aaKnown RBP4.44□□□□□ -1.7
CD44-211ENST00000442151 Q6ZRX8 168 aa4.44□□□□□ -1.7
CD44-211ENST00000442151 TRAV23DV6A0A075B6W5 121 aa4.44□□□□□ -1.7
CD44-211ENST00000442151 E9PLD3 99 aa4.44□□□□□ -1.7
CD44-211ENST00000442151 IGLV6-57P01721 117 aa4.44□□□□□ -1.7
CD44-211ENST00000442151 AKR1D1P51857 326 aa4.44□□□□□ -1.7
CD44-211ENST00000442151 LINC00518Q8N0U6 118 aa4.44□□□□□ -1.7
CD44-211ENST00000442151 IGLV9-49A0A0B4J1Y8 123 aa4.43□□□□□ -1.7
CD44-211ENST00000442151 TIMM17BO60830 172 aa4.43□□□□□ -1.7
CD44-211ENST00000442151 DHRS4-AS1Q9P1J3 65 aa4.43□□□□□ -1.7
CD44-211ENST00000442151 COLCA2A8K830 154 aa4.42□□□□□ -1.7
CD44-211ENST00000442151 ZNF73O43830 326 aaPredicted RBP4.42□□□□□ -1.7
CD44-211ENST00000442151 MOBPQ13875 183 aa4.42□□□□□ -1.7
CD44-211ENST00000442151 OR13C6PQ8NH95 151 aa4.42□□□□□ -1.7
CD44-211ENST00000442151 A0A0J9YXY3 114 aa4.42□□□□□ -1.7
CD44-211ENST00000442151 C9orf153Q5TBE3 101 aa4.42□□□□□ -1.7
CD44-211ENST00000442151 LIMD2Q9BT23 127 aa4.42□□□□□ -1.7
CD44-211ENST00000442151 SPANXCQ9NY87 97 aa4.42□□□□□ -1.7
CD44-211ENST00000442151 LAMTOR3Q9UHA4 124 aa4.42□□□□□ -1.7
CD44-211ENST00000442151 TSPEAR-AS2P59090 65 aa4.41□□□□□ -1.7
CD44-211ENST00000442151 KRTAP10-7P60409 375 aaPredicted RBP4.41□□□□□ -1.7
CD44-211ENST00000442151 SYS1-DBNDD2H3BUS1 97 aa4.4□□□□□ -1.7
CD44-211ENST00000442151 ASB16-AS1Q495Z4 193 aa4.4□□□□□ -1.7
CD44-211ENST00000442151 SPANXDQ9BXN6 97 aa4.4□□□□□ -1.7
CD44-211ENST00000442151 C20orf202A1L168 122 aa4.39□□□□□ -1.71
CD44-211ENST00000442151 LINC01547P58512 204 aaPredicted RBP4.39□□□□□ -1.71
CD44-211ENST00000442151 KRTAP13-3Q3SY46 172 aa4.39□□□□□ -1.71
CD44-211ENST00000442151 PMCHL2Q9BQD1 86 aa4.39□□□□□ -1.71
CD44-211ENST00000442151 Q9BRP9 147 aa4.39□□□□□ -1.71
CD44-211ENST00000442151 ERC2-IT1O76042 136 aa4.39□□□□□ -1.71
CD44-211ENST00000442151 S100A6P06703 90 aa4.39□□□□□ -1.71
CD44-211ENST00000442151 Q8N377 158 aa4.39□□□□□ -1.71
CD44-211ENST00000442151 LINC00308Q8TCZ7 52 aa4.39□□□□□ -1.71
CD44-211ENST00000442151 A0A0A0MQY5 61 aa4.38□□□□□ -1.71
CD44-211ENST00000442151 TAL2Q16559 108 aa4.38□□□□□ -1.71
CD44-211ENST00000442151 Q6ZVH6 145 aa4.38□□□□□ -1.71
CD44-211ENST00000442151 TRBV7-6A0A0J9YX20 115 aa4.37□□□□□ -1.71
CD44-211ENST00000442151 ZNF815PA8K554 130 aa4.37□□□□□ -1.71
CD44-211ENST00000442151 SPRR1BP22528 89 aa4.37□□□□□ -1.71
CD44-211ENST00000442151 COX7BP24311 80 aa4.37□□□□□ -1.71
CD44-211ENST00000442151 NPC2P61916 151 aa4.37□□□□□ -1.71
CD44-211ENST00000442151 IFITM1P13164 125 aa4.37□□□□□ -1.71
CD44-211ENST00000442151 CD164Q04900 197 aa4.37□□□□□ -1.71
CD44-211ENST00000442151 ADAMTSL4-AS1Q5T5F5 129 aa4.37□□□□□ -1.71
CD44-211ENST00000442151 LINC01545Q5VT33 79 aa4.37□□□□□ -1.71
CD44-211ENST00000442151 SCGB1D4Q6XE38 83 aa4.37□□□□□ -1.71
CD44-211ENST00000442151 PRO1933Q9H354 126 aa4.37□□□□□ -1.71
CD44-211ENST00000442151 NHP2Q9NX24 153 aaKnown RBP4.37□□□□□ -1.71
CD44-211ENST00000442151 SNRPEP62304 92 aaKnown RBP4.36□□□□□ -1.71
CD44-211ENST00000442151 SOSTDC1Q6X4U4 206 aa4.36□□□□□ -1.71
CD44-211ENST00000442151 TEX49A0A1B0GTD5 131 aa4.35□□□□□ -1.71
CD44-211ENST00000442151 A0A1B0GWB2 263 aa4.35□□□□□ -1.71
CD44-211ENST00000442151 H7C2G1 150 aa4.35□□□□□ -1.71
CD44-211ENST00000442151 SMIM6P0DI80 62 aa4.35□□□□□ -1.71
CD44-211ENST00000442151 HIST1H2BKO60814 126 aa4.34□□□□□ -1.71
CD44-211ENST00000442151 HIST1H2BJP06899 126 aa4.34□□□□□ -1.71
CD44-211ENST00000442151 HIST1H2BOP23527 126 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms