RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 K7EIM0 57 aa0.4□□□□□ -2.35
VPS41-207ENST00000439468 SPINK4O60575 86 aa0.4□□□□□ -2.35
VPS41-207ENST00000439468 CYB5AP00167 134 aa0.4□□□□□ -2.35
VPS41-207ENST00000439468 TCRAP04437 139 aa0.4□□□□□ -2.35
VPS41-207ENST00000439468 SLC25A5P05141 298 aaKnown RBP0.4□□□□□ -2.35
VPS41-207ENST00000439468 SFTA3P0C7M3 94 aa0.4□□□□□ -2.35
VPS41-207ENST00000439468 HTN1P15515 57 aa0.4□□□□□ -2.35
VPS41-207ENST00000439468 DNAJB13P59910 316 aa0.4□□□□□ -2.35
VPS41-207ENST00000439468 B2MP61769 119 aa0.4□□□□□ -2.35
VPS41-207ENST00000439468 RPL38P63173 70 aaKnown RBP0.4□□□□□ -2.35
VPS41-207ENST00000439468 ZNF56Q15929 161 aa0.4□□□□□ -2.35
VPS41-207ENST00000439468 OR8J3Q8NGG0 315 aa0.4□□□□□ -2.35
VPS41-207ENST00000439468 MRPL36Q9P0J6 103 aaKnown RBP0.4□□□□□ -2.35
VPS41-207ENST00000439468 UBE2D4Q9Y2X8 147 aa0.4□□□□□ -2.35
VPS41-207ENST00000439468 TRGV1A0A0A0MS02 117 aa0.39□□□□□ -2.35
VPS41-207ENST00000439468 IGLC7A0M8Q6 106 aa0.39□□□□□ -2.35
VPS41-207ENST00000439468 TMEM30CPA0ZSE6 113 aa0.39□□□□□ -2.35
VPS41-207ENST00000439468 FAM24AA6NFZ4 105 aa0.39□□□□□ -2.35
VPS41-207ENST00000439468 HIST1H1BP16401 226 aaKnown RBP0.39□□□□□ -2.35
VPS41-207ENST00000439468 SPINK7P58062 85 aa0.39□□□□□ -2.35
VPS41-207ENST00000439468 PRCDQ00LT1 54 aa0.39□□□□□ -2.35
VPS41-207ENST00000439468 Q5XG85 94 aa0.39□□□□□ -2.35
VPS41-207ENST00000439468 SMIM7Q9BQ49 75 aa0.39□□□□□ -2.35
VPS41-207ENST00000439468 SPRR2GQ9BYE4 73 aa0.39□□□□□ -2.35
VPS41-207ENST00000439468 JPT1Q9UK76 154 aa0.39□□□□□ -2.35
VPS41-207ENST00000439468 J3KT08 172 aa0.38□□□□□ -2.35
VPS41-207ENST00000439468 FXYD1O00168 92 aa0.38□□□□□ -2.35
VPS41-207ENST00000439468 DEGS1O15121 323 aa0.38□□□□□ -2.35
VPS41-207ENST00000439468 YPEL1O60688 119 aa0.38□□□□□ -2.35
VPS41-207ENST00000439468 MT1EP04732 61 aa0.38□□□□□ -2.35
VPS41-207ENST00000439468 LINC00694P0DN24 101 aa0.38□□□□□ -2.35
VPS41-207ENST00000439468 CKS2P33552 79 aa0.38□□□□□ -2.35
VPS41-207ENST00000439468 KRTAP19-7Q3SYF9 63 aa0.38□□□□□ -2.35
VPS41-207ENST00000439468 C9orf116Q5BN46 136 aaPredicted RBP0.38□□□□□ -2.35
VPS41-207ENST00000439468 MT1MQ8N339 61 aa0.38□□□□□ -2.35
VPS41-207ENST00000439468 CALML5Q9NZT1 146 aa0.38□□□□□ -2.35
VPS41-207ENST00000439468 LINC00474Q9P2X8 69 aa0.38□□□□□ -2.35
VPS41-207ENST00000439468 V9GYS6 101 aa0.38□□□□□ -2.35
VPS41-207ENST00000439468 IGHV1-24A0A0C4DH33 117 aa0.37□□□□□ -2.35
VPS41-207ENST00000439468 IFITM5A6NNB3 132 aa0.37□□□□□ -2.35
VPS41-207ENST00000439468 TSTD3H0UI37 97 aa0.37□□□□□ -2.35
VPS41-207ENST00000439468 UQCRQO14949 82 aa0.37□□□□□ -2.35
VPS41-207ENST00000439468 MT-ND4LP03901 98 aa0.37□□□□□ -2.35
VPS41-207ENST00000439468 LINC00032P0C843 101 aa0.37□□□□□ -2.35
VPS41-207ENST00000439468 WT1-ASQ06250 92 aa0.37□□□□□ -2.35
VPS41-207ENST00000439468 Q0VG73 95 aa0.37□□□□□ -2.35
VPS41-207ENST00000439468 PIGYQ3MUY2 71 aa0.37□□□□□ -2.35
VPS41-207ENST00000439468 Q56UQ5 140 aa0.37□□□□□ -2.35
VPS41-207ENST00000439468 LINC01590Q5TEZ4 76 aa0.37□□□□□ -2.35
VPS41-207ENST00000439468 SPAG11AQ6PDA7 123 aa0.37□□□□□ -2.35
VPS41-207ENST00000439468 SREK1IP1Q8N9Q2 155 aaPredicted RBP0.37□□□□□ -2.35
VPS41-207ENST00000439468 TTTY10Q9BZA0 68 aa0.37□□□□□ -2.35
VPS41-207ENST00000439468 MRPL35Q9NZE8 188 aaKnown RBP0.37□□□□□ -2.35
VPS41-207ENST00000439468 IER3IP1Q9Y5U9 82 aa0.37□□□□□ -2.35
VPS41-207ENST00000439468 SMIM24O75264 130 aa0.36□□□□□ -2.35
VPS41-207ENST00000439468 APOC1P02654 83 aa0.36□□□□□ -2.35
VPS41-207ENST00000439468 ADCYAP1P18509 176 aa0.36□□□□□ -2.35
VPS41-207ENST00000439468 UBE2D3P61077 147 aa0.36□□□□□ -2.35
VPS41-207ENST00000439468 HSD17B12Q53GQ0 312 aa0.36□□□□□ -2.35
VPS41-207ENST00000439468 CLPSL2Q6UWE3 100 aa0.36□□□□□ -2.35
VPS41-207ENST00000439468 OR8I2Q8N0Y5 310 aa0.36□□□□□ -2.35
VPS41-207ENST00000439468 NDUFA12Q9UI09 145 aa0.36□□□□□ -2.35
VPS41-207ENST00000439468 DNAJC15Q9Y5T4 150 aa0.36□□□□□ -2.35
VPS41-207ENST00000439468 GVQW2A0A096LPI5 108 aaPredicted RBP0.35□□□□□ -2.35
VPS41-207ENST00000439468 SPINK1P00995 79 aa0.35□□□□□ -2.35
VPS41-207ENST00000439468 CD3DP04234 171 aa0.35□□□□□ -2.35
VPS41-207ENST00000439468 NBEAP1P0C6P0 100 aa0.35□□□□□ -2.35
VPS41-207ENST00000439468 MT1GP13640 62 aa0.35□□□□□ -2.35
VPS41-207ENST00000439468 RBP2P50120 134 aa0.35□□□□□ -2.35
VPS41-207ENST00000439468 RPS29P62273 56 aaKnown RBP0.35□□□□□ -2.35
VPS41-207ENST00000439468 HMGN3Q15651 99 aa0.35□□□□□ -2.35
VPS41-207ENST00000439468 TMEM203Q969S6 136 aa0.35□□□□□ -2.35
VPS41-207ENST00000439468 TPT1P8Q9HAU6 139 aa0.35□□□□□ -2.35
VPS41-207ENST00000439468 HIGD1CA8MV81 97 aa0.34□□□□□ -2.36
VPS41-207ENST00000439468 GNG7O60262 68 aa0.34□□□□□ -2.36
VPS41-207ENST00000439468 DPM2O94777 84 aa0.34□□□□□ -2.36
VPS41-207ENST00000439468 RHOHQ15669 191 aa0.34□□□□□ -2.36
VPS41-207ENST00000439468 RPRMQ9NS64 109 aa0.34□□□□□ -2.36
VPS41-207ENST00000439468 FXYD6-FXYD2A0A087WZ82 144 aa0.33□□□□□ -2.36
VPS41-207ENST00000439468 TRAV12-3A0A0B4J271 114 aa0.33□□□□□ -2.36
VPS41-207ENST00000439468 RBAKDNA6NC62 111 aa0.33□□□□□ -2.36
VPS41-207ENST00000439468 H0YAA0 97 aa0.33□□□□□ -2.36
VPS41-207ENST00000439468 LSM3P62310 102 aaKnown RBP0.33□□□□□ -2.36
VPS41-207ENST00000439468 HIST1H1AQ02539 215 aaPredicted RBP0.33□□□□□ -2.36
VPS41-207ENST00000439468 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.33□□□□□ -2.36
VPS41-207ENST00000439468 ZNF436-AS1Q8NC38 126 aaPredicted RBP0.33□□□□□ -2.36
VPS41-207ENST00000439468 DMAC1Q96GE9 116 aa0.33□□□□□ -2.36
VPS41-207ENST00000439468 PPP3R2Q96LZ3 170 aa0.33□□□□□ -2.36
VPS41-207ENST00000439468 BANF2Q9H503 90 aa0.33□□□□□ -2.36
VPS41-207ENST00000439468 TRBV20-1A0A075B6N2 111 aa0.32□□□□□ -2.36
VPS41-207ENST00000439468 H3BQF6 201 aa0.32□□□□□ -2.36
VPS41-207ENST00000439468 S100A3P33764 101 aa0.32□□□□□ -2.36
VPS41-207ENST00000439468 EMX2Q04743 252 aa0.32□□□□□ -2.36
VPS41-207ENST00000439468 KRTAP6-2Q3LI66 62 aa0.32□□□□□ -2.36
VPS41-207ENST00000439468 TMEM244Q5VVB8 128 aa0.32□□□□□ -2.36
VPS41-207ENST00000439468 CTAGE3PQ8IX95 158 aa0.32□□□□□ -2.36
VPS41-207ENST00000439468 PP6455Q8WZ26 134 aa0.32□□□□□ -2.36
VPS41-207ENST00000439468 ATG5Q9H1Y0 275 aa0.32□□□□□ -2.36
VPS41-207ENST00000439468 NDUFA4L2Q9NRX3 87 aa0.32□□□□□ -2.36
VPS41-207ENST00000439468 BET1LQ9NYM9 111 aa0.32□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms