RNA–Protein interactions for RNA: ENST00000432425.5

CLK1-204, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best)

Gene CLK1, Length 1,682 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-204ENST00000432425 KRTAP12-1P59990 96 aa1.13□□□□□ -2.23
CLK1-204ENST00000432425 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.13□□□□□ -2.23
CLK1-204ENST00000432425 KCNQ1DNQ9H478 68 aa1.13□□□□□ -2.23
CLK1-204ENST00000432425 AHCTF1Q8WYP5 2266 aa1.13□□□□□ -2.23
CLK1-204ENST00000432425 LRRC37AA6NMS7 1700 aa1.12□□□□□ -2.23
CLK1-204ENST00000432425 GVQW2A0A096LPI5 108 aaPredicted RBP1.12□□□□□ -2.23
CLK1-204ENST00000432425 ETDCA0A1B0GVM5 59 aa1.12□□□□□ -2.23
CLK1-204ENST00000432425 LINC01546A6NGU7 62 aa1.12□□□□□ -2.23
CLK1-204ENST00000432425 NCR3O14931 201 aa1.12□□□□□ -2.23
CLK1-204ENST00000432425 ZDBF2Q9HCK1 2354 aa1.12□□□□□ -2.23
CLK1-204ENST00000432425 DEFB114Q30KQ6 69 aa1.11□□□□□ -2.23
CLK1-204ENST00000432425 SMIM11BQ8TCY0 68 aa1.11□□□□□ -2.23
CLK1-204ENST00000432425 PLAC4Q8WY50 150 aa1.11□□□□□ -2.23
CLK1-204ENST00000432425 CRIPTQ9P021 101 aa1.11□□□□□ -2.23
CLK1-204ENST00000432425 DOPEY2Q9Y3R5 2298 aa1.1□□□□□ -2.23
CLK1-204ENST00000432425 CPSF4LA6NMK7 179 aaKnown RBP1.1□□□□□ -2.23
CLK1-204ENST00000432425 TNRC6CQ9HCJ0 1690 aaKnown RBP1.1□□□□□ -2.23
CLK1-204ENST00000432425 COL6A6A6NMZ7 2263 aa1.1□□□□□ -2.23
CLK1-204ENST00000432425 CNOT1A5YKK6 2376 aaKnown RBP1.1□□□□□ -2.23
CLK1-204ENST00000432425 CRIP1P50238 77 aa1.1□□□□□ -2.23
CLK1-204ENST00000432425 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.09□□□□□ -2.234e-7■■■■□ 22.2
CLK1-204ENST00000432425 LOC730098B7Z3J9 87 aa1.09□□□□□ -2.24
CLK1-204ENST00000432425 PRB3Q04118 309 aaPredicted RBP1.08□□□□□ -2.24
CLK1-204ENST00000432425 TFF3Q07654 80 aa1.08□□□□□ -2.24
CLK1-204ENST00000432425 C10orf99Q6UWK7 81 aa1.08□□□□□ -2.24
CLK1-204ENST00000432425 PRO3102Q9H379 93 aa1.08□□□□□ -2.24
CLK1-204ENST00000432425 CACNA1EQ15878 2313 aa1.08□□□□□ -2.24
CLK1-204ENST00000432425 SPTY2D1-AS1A0A0U1RR47 76 aa1.07□□□□□ -2.24
CLK1-204ENST00000432425 H0YGX0 51 aa1.07□□□□□ -2.24
CLK1-204ENST00000432425 KRTAP21-3Q3LHN1 58 aa1.07□□□□□ -2.24
CLK1-204ENST00000432425 FLG2Q5D862 2391 aaPredicted RBP1.07□□□□□ -2.24
CLK1-204ENST00000432425 RPL38P63173 70 aaKnown RBP1.07□□□□□ -2.24
CLK1-204ENST00000432425 CACNA1BQ00975 2339 aa1.06□□□□□ -2.24
CLK1-204ENST00000432425 PIN1P1O15428 100 aa1.06□□□□□ -2.24
CLK1-204ENST00000432425 ANGP03950 147 aaKnown RBP1.06□□□□□ -2.24
CLK1-204ENST00000432425 LINC00158P58513 81 aa1.06□□□□□ -2.24
CLK1-204ENST00000432425 RPL37P61927 97 aaKnown RBP1.06□□□□□ -2.24
CLK1-204ENST00000432425 CDKN2A-AS1Q9UH64 79 aa1.06□□□□□ -2.24
CLK1-204ENST00000432425 HELZ2Q9BYK8 2649 aaKnown RBP1.06□□□□□ -2.24
CLK1-204ENST00000432425 PLCE1Q9P212 2302 aa1.06□□□□□ -2.24
CLK1-204ENST00000432425 NAV3Q8IVL0 2385 aa1.05□□□□□ -2.24
CLK1-204ENST00000432425 DEFB131BA0A096LNP1 70 aa1.05□□□□□ -2.24
CLK1-204ENST00000432425 PTPRQQ9UMZ3 2332 aa1.04□□□□□ -2.24
CLK1-204ENST00000432425 UNQ6190/PRO20217Q6UXQ8 127 aa1.04□□□□□ -2.24
CLK1-204ENST00000432425 UBE2DNLQ8IWF7 75 aa1.04□□□□□ -2.24
CLK1-204ENST00000432425 TMEM167BQ9NRX6 74 aa1.04□□□□□ -2.24
CLK1-204ENST00000432425 MRPL33O75394 65 aaKnown RBP1.04□□□□□ -2.24
CLK1-204ENST00000432425 DEFB103AP81534 67 aa1.04□□□□□ -2.24
CLK1-204ENST00000432425 PCOTHQ58A44 107 aa1.04□□□□□ -2.24
CLK1-204ENST00000432425 RPS27LQ71UM5 84 aaKnown RBP1.04□□□□□ -2.24
CLK1-204ENST00000432425 LINC00308Q8TCZ7 52 aa1.04□□□□□ -2.24
CLK1-204ENST00000432425 SPINK13Q1W4C9 94 aa1.03□□□□□ -2.24
CLK1-204ENST00000432425 LINC00575Q6W349 94 aa1.03□□□□□ -2.24
CLK1-204ENST00000432425 Q8IZM0 81 aa1.03□□□□□ -2.24
CLK1-204ENST00000432425 C10orf95Q9H7T3 257 aa1.03□□□□□ -2.24
CLK1-204ENST00000432425 ALMS1Q8TCU4 4167 aa1.02□□□□□ -2.25
CLK1-204ENST00000432425 LELP1Q5T871 98 aa1.02□□□□□ -2.25
CLK1-204ENST00000432425 PDE4DIPQ5VU43 2346 aa1.01□□□□□ -2.25
CLK1-204ENST00000432425 FAM208BQ5VWN6 2430 aa1.01□□□□□ -2.25
CLK1-204ENST00000432425 I3L2K1 104 aa1.01□□□□□ -2.25
CLK1-204ENST00000432425 K7EQZ3 153 aa1.01□□□□□ -2.25
CLK1-204ENST00000432425 MRPL34Q9BQ48 92 aaKnown RBP1.01□□□□□ -2.25
CLK1-204ENST00000432425 JMJD1CQ15652 2540 aa1.01□□□□□ -2.25
CLK1-204ENST00000432425 IAPPP10997 89 aa1□□□□□ -2.25
CLK1-204ENST00000432425 H0YAA0 97 aa1□□□□□ -2.25
CLK1-204ENST00000432425 SMIM2Q9BVW6 85 aa1□□□□□ -2.25
CLK1-204ENST00000432425 TP53AIP1Q9HCN2 124 aa1□□□□□ -2.25
CLK1-204ENST00000432425 CNTRLQ7Z7A1 2325 aa0.99□□□□□ -2.25
CLK1-204ENST00000432425 USF3Q68DE3 2245 aa0.99□□□□□ -2.25
CLK1-204ENST00000432425 CCL22O00626 93 aa0.99□□□□□ -2.25
CLK1-204ENST00000432425 NDUFA1O15239 70 aa0.99□□□□□ -2.25
CLK1-204ENST00000432425 LYNX1P0DP58 116 aa0.99□□□□□ -2.25
CLK1-204ENST00000432425 KNL1Q8NG31 2342 aa0.99□□□□□ -2.25
CLK1-204ENST00000432425 PTPRZ1P23471 2315 aaPredicted RBP0.99□□□□□ -2.25
CLK1-204ENST00000432425 MINOS1Q5TGZ0 78 aa0.98□□□□□ -2.25
CLK1-204ENST00000432425 PIEZO2Q9H5I5 2752 aa0.98□□□□□ -2.25
CLK1-204ENST00000432425 K7EIL1 84 aa0.97□□□□□ -2.25
CLK1-204ENST00000432425 DEFB106AQ8N104 65 aa0.97□□□□□ -2.25
CLK1-204ENST00000432425 DEFB123Q8N688 67 aa0.97□□□□□ -2.25
CLK1-204ENST00000432425 TTTY10Q9BZA0 68 aa0.97□□□□□ -2.25
CLK1-204ENST00000432425 MACF1Q9UPN3 7388 aaKnown RBP0.97□□□□□ -2.25
CLK1-204ENST00000432425 LYNX1G3V0Z9 82 aa0.97□□□□□ -2.25
CLK1-204ENST00000432425 COX6A2Q02221 97 aa0.97□□□□□ -2.25
CLK1-204ENST00000432425 PIGYQ3MUY2 71 aa0.97□□□□□ -2.25
CLK1-204ENST00000432425 CNFNQ9BYD5 112 aa0.97□□□□□ -2.25
CLK1-204ENST00000432425 C6orf48Q9UBA6 75 aa0.97□□□□□ -2.25
CLK1-204ENST00000432425 IGF2RP11717 2491 aa0.96□□□□□ -2.26
CLK1-204ENST00000432425 WFDC13Q8IUB5 93 aa0.96□□□□□ -2.26
CLK1-204ENST00000432425 USMG5Q96IX5 58 aa0.96□□□□□ -2.26
CLK1-204ENST00000432425 PKDREJQ9NTG1 2253 aa0.96□□□□□ -2.26
CLK1-204ENST00000432425 Q6ZSA8 131 aa0.95□□□□□ -2.26
CLK1-204ENST00000432425 ARHGAP5-AS1Q96IT6 56 aa0.95□□□□□ -2.26
CLK1-204ENST00000432425 REV3LO60673 3130 aa0.94□□□□□ -2.26
CLK1-204ENST00000432425 C2CD3Q4AC94 2353 aa0.94□□□□□ -2.26
CLK1-204ENST00000432425 H3BSH0 61 aa0.94□□□□□ -2.26
CLK1-204ENST00000432425 ROS1P08922 2347 aa0.94□□□□□ -2.26
CLK1-204ENST00000432425 RPS27P42677 84 aaKnown RBP0.94□□□□□ -2.26
CLK1-204ENST00000432425 H1FX-AS1Q4G0G2 97 aa0.94□□□□□ -2.26
CLK1-204ENST00000432425 COX6B2Q6YFQ2 88 aa0.94□□□□□ -2.26
CLK1-204ENST00000432425 WFDC10BQ8IUB3 73 aa0.94□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms