RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 PLA2G2DQ9UNK4 145 aa5.27□□□□□ -1.57
SYNE1-210ENST00000409694 CR1P17927 2039 aa5.26□□□□□ -1.57
SYNE1-210ENST00000409694 C15orf56Q8N910 161 aa5.26□□□□□ -1.57
SYNE1-210ENST00000409694 WWC2-AS2Q96NR7 200 aa5.26□□□□□ -1.57
SYNE1-210ENST00000409694 ZNF462Q96JM2 2506 aa5.26□□□□□ -1.57
SYNE1-210ENST00000409694 A0A0D9SG42 100 aa5.26□□□□□ -1.57
SYNE1-210ENST00000409694 FASNP49327 2511 aaKnown RBP5.25□□□□□ -1.57
SYNE1-210ENST00000409694 HRES1P13985 223 aa5.25□□□□□ -1.57
SYNE1-210ENST00000409694 Q8NAQ8 132 aa5.25□□□□□ -1.57
SYNE1-210ENST00000409694 H7BZZ5 65 aa5.25□□□□□ -1.57
SYNE1-210ENST00000409694 LINC00528Q8N1L1 170 aa5.25□□□□□ -1.57
SYNE1-210ENST00000409694 JMJD1CQ15652 2540 aa5.25□□□□□ -1.57
SYNE1-210ENST00000409694 SETD2Q9BYW2 2564 aaPredicted RBP5.25□□□□□ -1.57
SYNE1-210ENST00000409694 LINC00336Q6ZUF6 198 aa5.25□□□□□ -1.57
SYNE1-210ENST00000409694 FAM168BA1KXE4 195 aa5.25□□□□□ -1.57
SYNE1-210ENST00000409694 C9orf92A6NGG3 77 aa5.24□□□□□ -1.57
SYNE1-210ENST00000409694 USP9YO00507 2555 aaPredicted RBP5.24□□□□□ -1.57
SYNE1-210ENST00000409694 DMAC1Q96GE9 116 aa5.24□□□□□ -1.57
SYNE1-210ENST00000409694 C9orf163Q8N9P6 203 aa5.23□□□□□ -1.57
SYNE1-210ENST00000409694 LITAFQ99732 161 aa5.23□□□□□ -1.57
SYNE1-210ENST00000409694 CDSNQ15517 529 aa5.23□□□□□ -1.57
SYNE1-210ENST00000409694 IGLV5-48A0A075B6I7 105 aa5.22□□□□□ -1.57
SYNE1-210ENST00000409694 TLX1NBP0CAT3 122 aa5.22□□□□□ -1.57
SYNE1-210ENST00000409694 CAMK2N1Q7Z7J9 78 aa5.22□□□□□ -1.57
SYNE1-210ENST00000409694 PKD1L2Q7Z442 2459 aa5.21□□□□□ -1.57
SYNE1-210ENST00000409694 KRTAP10-9P60411 292 aa5.21□□□□□ -1.57
SYNE1-210ENST00000409694 Q75L30 129 aa5.2□□□□□ -1.58
SYNE1-210ENST00000409694 FLG2Q5D862 2391 aaPredicted RBP5.19□□□□□ -1.58
SYNE1-210ENST00000409694 A0A1B0GU33 70 aa5.18□□□□□ -1.58
SYNE1-210ENST00000409694 ZNF575Q86XF7 245 aa5.18□□□□□ -1.58
SYNE1-210ENST00000409694 Q8N377 158 aa5.18□□□□□ -1.58
SYNE1-210ENST00000409694 CEP295Q9C0D2 2601 aa5.17□□□□□ -1.58
SYNE1-210ENST00000409694 WIPF1O43516 503 aa5.17□□□□□ -1.58
SYNE1-210ENST00000409694 IGLV7-43P04211 117 aa5.17□□□□□ -1.58
SYNE1-210ENST00000409694 PRR34Q9NV39 138 aa5.15□□□□□ -1.58
SYNE1-210ENST00000409694 Q8N1X5 172 aa5.15□□□□□ -1.58
SYNE1-210ENST00000409694 Q6ZSA8 131 aa5.15□□□□□ -1.58
SYNE1-210ENST00000409694 SPRR4Q96PI1 79 aa5.15□□□□□ -1.59
SYNE1-210ENST00000409694 H3BS24 57 aa5.13□□□□□ -1.59
SYNE1-210ENST00000409694 CNBPP62633 177 aaKnown RBP5.13□□□□□ -1.59
SYNE1-210ENST00000409694 A0A1W2PPR1 153 aa5.12□□□□□ -1.59
SYNE1-210ENST00000409694 KLK9Q2XQG4 91 aa5.12□□□□□ -1.59
SYNE1-210ENST00000409694 IGLV7-46A0A075B6I9 117 aa5.12□□□□□ -1.59
SYNE1-210ENST00000409694 A0A087WTM6 91 aa5.12□□□□□ -1.59
SYNE1-210ENST00000409694 S4R3F8 94 aa5.11□□□□□ -1.59
SYNE1-210ENST00000409694 POLQO75417 2590 aa5.11□□□□□ -1.59
SYNE1-210ENST00000409694 PRR26Q8N8Z3 221 aa5.1□□□□□ -1.59
SYNE1-210ENST00000409694 PSORS1C2Q9UIG4 136 aa5.09□□□□□ -1.59
SYNE1-210ENST00000409694 M0R2T5 61 aa5.09□□□□□ -1.6
SYNE1-210ENST00000409694 TNP2Q05952 138 aa5.08□□□□□ -1.6
SYNE1-210ENST00000409694 OCR1Q9BZK8 76 aa5.08□□□□□ -1.6
SYNE1-210ENST00000409694 KRTAP24-1Q3LI83 254 aa5.07□□□□□ -1.6
SYNE1-210ENST00000409694 CSAG1Q6PB30 78 aa5.07□□□□□ -1.6
SYNE1-210ENST00000409694 SPINK7P58062 85 aa5.07□□□□□ -1.6
SYNE1-210ENST00000409694 C10orf142B7Z368 130 aa5.06□□□□□ -1.6
SYNE1-210ENST00000409694 FAM229BQ4G0N7 80 aa5.06□□□□□ -1.6
SYNE1-210ENST00000409694 LINC01558Q9Y6Z2 57 aa5.05□□□□□ -1.6
SYNE1-210ENST00000409694 ASB16-AS1Q495Z4 193 aa5.04□□□□□ -1.6
SYNE1-210ENST00000409694 C19orf73Q9NVV2 129 aa5.03□□□□□ -1.6
SYNE1-210ENST00000409694 LINC00612Q8N6U2 182 aa5.03□□□□□ -1.6
SYNE1-210ENST00000409694 A0A1W2PNM2 257 aa5.03□□□□□ -1.6
SYNE1-210ENST00000409694 ROMO1P60602 79 aa5.02□□□□□ -1.61
SYNE1-210ENST00000409694 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.02□□□□□ -1.61
SYNE1-210ENST00000409694 USP24Q9UPU5 2620 aa5.02□□□□□ -1.61
SYNE1-210ENST00000409694 ZCCHC13Q8WW36 166 aaKnown RBP5.01□□□□□ -1.61
SYNE1-210ENST00000409694 R4GN34 69 aa5.01□□□□□ -1.61
SYNE1-210ENST00000409694 EPG5Q9HCE0 2579 aa5.01□□□□□ -1.61
SYNE1-210ENST00000409694 K7EIL1 84 aa5□□□□□ -1.61
SYNE1-210ENST00000409694 KRTAP10-11P60412 298 aa5□□□□□ -1.61
SYNE1-210ENST00000409694 ANAPC11Q9NYG5 84 aa5□□□□□ -1.61
SYNE1-210ENST00000409694 SMR3BP02814 79 aaPredicted RBP5□□□□□ -1.61
SYNE1-210ENST00000409694 A0A1W2PNN7 141 aa4.99□□□□□ -1.61
SYNE1-210ENST00000409694 GIG44P09565 113 aaPredicted RBP4.99□□□□□ -1.61
SYNE1-210ENST00000409694 A0A0G2JQZ4 141 aa4.98□□□□□ -1.61
SYNE1-210ENST00000409694 Q8N9P0 234 aaPredicted RBP4.98□□□□□ -1.61
SYNE1-210ENST00000409694 FLNBO75369 2602 aaKnown RBP4.97□□□□□ -1.61
SYNE1-210ENST00000409694 RPL37P61927 97 aaKnown RBP4.96□□□□□ -1.62
SYNE1-210ENST00000409694 H1FX-AS1Q4G0G2 97 aa4.96□□□□□ -1.62
SYNE1-210ENST00000409694 SEC61BP60468 96 aaKnown RBP4.95□□□□□ -1.62
SYNE1-210ENST00000409694 EIF4EBP3O60516 100 aaPredicted RBP4.94□□□□□ -1.62
SYNE1-210ENST00000409694 Q5VV11 94 aa4.94□□□□□ -1.62
SYNE1-210ENST00000409694 PLAC4Q8WY50 150 aa4.94□□□□□ -1.62
SYNE1-210ENST00000409694 KRTAP16-1A8MUX0 517 aa4.93□□□□□ -1.62
SYNE1-210ENST00000409694 MAST4O15021 2626 aa4.92□□□□□ -1.62
SYNE1-210ENST00000409694 Q5XG85 94 aa4.91□□□□□ -1.62
SYNE1-210ENST00000409694 MMP24-AS1A0A0U1RRL7 71 aa4.91□□□□□ -1.62
SYNE1-210ENST00000409694 PRAC1Q96KF2 57 aa4.91□□□□□ -1.62
SYNE1-210ENST00000409694 Q5W150 140 aa4.9□□□□□ -1.62
SYNE1-210ENST00000409694 M0QZ58 72 aa4.87□□□□□ -1.63
SYNE1-210ENST00000409694 HELZ2Q9BYK8 2649 aaKnown RBP4.87□□□□□ -1.63
SYNE1-210ENST00000409694 PLAC8Q9NZF1 115 aa4.86□□□□□ -1.63
SYNE1-210ENST00000409694 FP248Q71RG6 208 aaPredicted RBP4.85□□□□□ -1.63
SYNE1-210ENST00000409694 HECTD1Q9ULT8 2610 aa4.84□□□□□ -1.63
SYNE1-210ENST00000409694 CASC10Q5T4H9 136 aa4.84□□□□□ -1.64
SYNE1-210ENST00000409694 PRRC2CQ9Y520 2896 aaKnown RBP4.84□□□□□ -1.64
SYNE1-210ENST00000409694 KMT2BQ9UMN6 2715 aaPredicted RBP4.83□□□□□ -1.64
SYNE1-210ENST00000409694 LINC00472Q9H8W2 130 aa4.82□□□□□ -1.64
SYNE1-210ENST00000409694 SPRR1BP22528 89 aa4.8□□□□□ -1.64
SYNE1-210ENST00000409694 BPTFQ12830 3046 aa4.8□□□□□ -1.64
SYNE1-210ENST00000409694 ATRQ13535 2644 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms