RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 RMI2Q96E14 147 aa8.33□□□□□ -1.08
SHMT1-205ENST00000395684 STAB1Q9NY15 2570 aa8.33□□□□□ -1.08
SHMT1-205ENST00000395684 OXLD1Q5BKU9 147 aa8.32□□□□□ -1.08
SHMT1-205ENST00000395684 Q5XG85 94 aa8.32□□□□□ -1.08
SHMT1-205ENST00000395684 C1orf43Q9BWL3 253 aa8.32□□□□□ -1.08
SHMT1-205ENST00000395684 IGKV2D-24A0A075B6R9 120 aa8.31□□□□□ -1.08
SHMT1-205ENST00000395684 C4orf26Q17RF5 130 aa8.31□□□□□ -1.08
SHMT1-205ENST00000395684 COL6A5A8TX70 2615 aa8.31□□□□□ -1.08
SHMT1-205ENST00000395684 Q8N9L7 120 aa8.31□□□□□ -1.08
SHMT1-205ENST00000395684 KRTAP10-11P60412 298 aa8.3□□□□□ -1.08
SHMT1-205ENST00000395684 TENM3Q9P273 2699 aa8.3□□□□□ -1.08
SHMT1-205ENST00000395684 SYCNQ0VAF6 134 aa8.3□□□□□ -1.08
SHMT1-205ENST00000395684 SERTAD4-AS1Q5TG53 156 aa8.3□□□□□ -1.08
SHMT1-205ENST00000395684 KCNQ1DNQ9H478 68 aa8.29□□□□□ -1.08
SHMT1-205ENST00000395684 LINC01556Q5JQF7 62 aa8.28□□□□□ -1.08
SHMT1-205ENST00000395684 DEFB105AQ8NG35 78 aa8.28□□□□□ -1.08
SHMT1-205ENST00000395684 Q8N377 158 aa8.28□□□□□ -1.08
SHMT1-205ENST00000395684 C7orf33Q8WU49 177 aa8.28□□□□□ -1.08
SHMT1-205ENST00000395684 EPM2AB3EWF7 344 aa8.27□□□□□ -1.08
SHMT1-205ENST00000395684 F8WEM9 126 aa8.27□□□□□ -1.08
SHMT1-205ENST00000395684 C3orf84H3BNL1 204 aa8.27□□□□□ -1.09
SHMT1-205ENST00000395684 BPY2O14599 106 aa8.27□□□□□ -1.09
SHMT1-205ENST00000395684 IGKV4-1P06312 121 aa8.26□□□□□ -1.09
SHMT1-205ENST00000395684 NREPQ16612 68 aa8.26□□□□□ -1.09
SHMT1-205ENST00000395684 NKAPP1Q8N9T2 125 aa8.26□□□□□ -1.09
SHMT1-205ENST00000395684 HRCT1Q6UXD1 115 aa8.26□□□□□ -1.09
SHMT1-205ENST00000395684 SERP1Q9Y6X1 66 aa8.26□□□□□ -1.09
SHMT1-205ENST00000395684 DEFB131BA0A096LNP1 70 aa8.25□□□□□ -1.09
SHMT1-205ENST00000395684 F8WDY8 70 aa8.25□□□□□ -1.09
SHMT1-205ENST00000395684 IGLV5-48A0A075B6I7 105 aa8.24□□□□□ -1.09
SHMT1-205ENST00000395684 RPL37AP8A6NKH3 93 aa8.23□□□□□ -1.09
SHMT1-205ENST00000395684 FAM168BA1KXE4 195 aa8.23□□□□□ -1.09
SHMT1-205ENST00000395684 TMEM254Q8TBM7 123 aa8.22□□□□□ -1.09
SHMT1-205ENST00000395684 Q9BRP9 147 aa8.22□□□□□ -1.09
SHMT1-205ENST00000395684 KRTAP4-16G5E9R7 235 aaPredicted RBP8.22□□□□□ -1.09
SHMT1-205ENST00000395684 C11orf45Q8TAV5 145 aa8.21□□□□□ -1.09
SHMT1-205ENST00000395684 DNAH10OSP0CZ25 163 aa8.21□□□□□ -1.1
SHMT1-205ENST00000395684 Q6ZRX8 168 aa8.21□□□□□ -1.1
SHMT1-205ENST00000395684 OCR1Q9BZK8 76 aa8.21□□□□□ -1.1
SHMT1-205ENST00000395684 NDUFC1O43677 76 aa8.2□□□□□ -1.1
SHMT1-205ENST00000395684 TLX1NBP0CAT3 122 aa8.2□□□□□ -1.1
SHMT1-205ENST00000395684 CASC10Q5T4H9 136 aa8.2□□□□□ -1.1
SHMT1-205ENST00000395684 KRTAP7-1Q8IUC3 87 aa8.2□□□□□ -1.1
SHMT1-205ENST00000395684 IGLV1-50A0A075B6I6 118 aa8.19□□□□□ -1.1
SHMT1-205ENST00000395684 A0A1W2PNM2 257 aa8.19□□□□□ -1.1
SHMT1-205ENST00000395684 ST20-AS1Q8NBB2 130 aa8.19□□□□□ -1.1
SHMT1-205ENST00000395684 DHRS4-AS1Q9P1J3 65 aa8.19□□□□□ -1.1
SHMT1-205ENST00000395684 PLA2G2DQ9UNK4 145 aa8.19□□□□□ -1.1
SHMT1-205ENST00000395684 ERC2-IT1O76042 136 aa8.19□□□□□ -1.1
SHMT1-205ENST00000395684 SPRR1AP35321 89 aa8.18□□□□□ -1.1
SHMT1-205ENST00000395684 TNP2Q05952 138 aa8.18□□□□□ -1.1
SHMT1-205ENST00000395684 CMYA5Q8N3K9 4069 aa8.18□□□□□ -1.1
SHMT1-205ENST00000395684 FUSP35637 526 aaKnown RBP eCLIP8.16□□□□□ -1.1
SHMT1-205ENST00000395684 IGLV5-37A0A075B6J1 123 aa8.16□□□□□ -1.1
SHMT1-205ENST00000395684 ETDCA0A1B0GVM5 59 aa8.16□□□□□ -1.1
SHMT1-205ENST00000395684 PRYO14603 147 aa8.16□□□□□ -1.1
SHMT1-205ENST00000395684 C1orf137Q5JT78 98 aa8.16□□□□□ -1.1
SHMT1-205ENST00000395684 FP248Q71RG6 208 aaPredicted RBP8.16□□□□□ -1.1
SHMT1-205ENST00000395684 MRAPQ8TCY5 172 aa8.16□□□□□ -1.1
SHMT1-205ENST00000395684 A0A0U1RQV1 116 aa8.16□□□□□ -1.1
SHMT1-205ENST00000395684 LINC00588Q9Y4M8 146 aa8.16□□□□□ -1.1
SHMT1-205ENST00000395684 DNAH1Q9P2D7 4330 aa8.15□□□□□ -1.1
SHMT1-205ENST00000395684 NOTCH1P46531 2555 aa8.13□□□□□ -1.11
SHMT1-205ENST00000395684 SMIM26A0A096LP01 95 aa8.13□□□□□ -1.11
SHMT1-205ENST00000395684 A0A1B0GW54 56 aa8.13□□□□□ -1.11
SHMT1-205ENST00000395684 Q8NBF4 154 aa8.13□□□□□ -1.11
SHMT1-205ENST00000395684 HIGD2AQ9BW72 106 aa8.13□□□□□ -1.11
SHMT1-205ENST00000395684 SMIM29Q86T20 159 aa8.13□□□□□ -1.11
SHMT1-205ENST00000395684 ATP5EP56381 51 aaPredicted RBP8.12□□□□□ -1.11
SHMT1-205ENST00000395684 MRPL55Q7Z7F7 128 aaKnown RBP8.12□□□□□ -1.11
SHMT1-205ENST00000395684 LINC00474Q9P2X8 69 aa8.12□□□□□ -1.11
SHMT1-205ENST00000395684 SPRR4Q96PI1 79 aa8.12□□□□□ -1.11
SHMT1-205ENST00000395684 FAM30AQ9NZY2 134 aa8.11□□□□□ -1.11
SHMT1-205ENST00000395684 DNAH3Q8TD57 4116 aa8.11□□□□□ -1.11
SHMT1-205ENST00000395684 DSCR10P59022 87 aa8.1□□□□□ -1.11
SHMT1-205ENST00000395684 UBE2BP63146 152 aa8.1□□□□□ -1.11
SHMT1-205ENST00000395684 KRTAP24-1Q3LI83 254 aa8.08□□□□□ -1.12
SHMT1-205ENST00000395684 A0A0G2JQZ4 141 aa8.08□□□□□ -1.12
SHMT1-205ENST00000395684 A0A1W2PNN7 141 aa8.08□□□□□ -1.12
SHMT1-205ENST00000395684 FAM229BQ4G0N7 80 aa8.08□□□□□ -1.12
SHMT1-205ENST00000395684 LINC00336Q6ZUF6 198 aa8.08□□□□□ -1.12
SHMT1-205ENST00000395684 NBEAL1Q6ZS30 2694 aa8.07□□□□□ -1.12
SHMT1-205ENST00000395684 K7EQZ3 153 aa8.07□□□□□ -1.12
SHMT1-205ENST00000395684 REG3GQ6UW15 175 aa8.06□□□□□ -1.12
SHMT1-205ENST00000395684 MGAM2Q2M2H8 2515 aa8.06□□□□□ -1.12
SHMT1-205ENST00000395684 LCE6AA0A183 80 aa8.06□□□□□ -1.12
SHMT1-205ENST00000395684 PRB2P02812 416 aaPredicted RBP8.06□□□□□ -1.12
SHMT1-205ENST00000395684 LINC00476Q8WZB0 136 aa8.05□□□□□ -1.12
SHMT1-205ENST00000395684 DNAH10Q8IVF4 4471 aa8.03□□□□□ -1.12
SHMT1-205ENST00000395684 IGFL1Q6UW32 110 aa8.02□□□□□ -1.13
SHMT1-205ENST00000395684 LYSTQ99698 3801 aa8.02□□□□□ -1.13
SHMT1-205ENST00000395684 HUWE1Q7Z6Z7 4374 aaKnown RBP8.02□□□□□ -1.13
SHMT1-205ENST00000395684 PRLHP81277 87 aa8.01□□□□□ -1.13
SHMT1-205ENST00000395684 A0A096LNI7 61 aa8.01□□□□□ -1.13
SHMT1-205ENST00000395684 DEFB116Q30KQ4 102 aa8.01□□□□□ -1.13
SHMT1-205ENST00000395684 ZCCHC13Q8WW36 166 aaKnown RBP8□□□□□ -1.13
SHMT1-205ENST00000395684 PRO0628Q9UI54 55 aa8□□□□□ -1.13
SHMT1-205ENST00000395684 IGKV2-24A0A0C4DH68 120 aa8□□□□□ -1.13
SHMT1-205ENST00000395684 MPLKIPQ8TAP9 179 aa8□□□□□ -1.13
SHMT1-205ENST00000395684 PSCAO43653 123 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms