RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 MUC7Q8TAX7 377 aa7.52□□□□□ -1.21
CUX1-204ENST00000393824 CELA1Q9UNI1 258 aa7.51□□□□□ -1.21
CUX1-204ENST00000393824 LINC00612Q8N6U2 182 aa7.51□□□□□ -1.21
CUX1-204ENST00000393824 TGP01266 2768 aa7.51□□□□□ -1.21
CUX1-204ENST00000393824 TMEM254Q8TBM7 123 aa7.5□□□□□ -1.21
CUX1-204ENST00000393824 NREPQ16612 68 aa7.5□□□□□ -1.21
CUX1-204ENST00000393824 Q8NDZ9 215 aa7.5□□□□□ -1.21
CUX1-204ENST00000393824 CSMD3Q7Z407 3707 aa7.49□□□□□ -1.21
CUX1-204ENST00000393824 DEFB130BP0DP73 79 aa7.49□□□□□ -1.21
CUX1-204ENST00000393824 DEFB130AP0DP74 79 aa7.49□□□□□ -1.21
CUX1-204ENST00000393824 ESRGQ1W209 222 aa7.48□□□□□ -1.21
CUX1-204ENST00000393824 CD164L2Q6UWJ8 174 aa7.48□□□□□ -1.21
CUX1-204ENST00000393824 Q6ZQY7 126 aa7.48□□□□□ -1.21
CUX1-204ENST00000393824 LYSTQ99698 3801 aa7.48□□□□□ -1.21
CUX1-204ENST00000393824 BPY2O14599 106 aa7.47□□□□□ -1.21
CUX1-204ENST00000393824 IGLV6-57P01721 117 aa7.47□□□□□ -1.21
CUX1-204ENST00000393824 GYPEP15421 78 aa7.46□□□□□ -1.21
CUX1-204ENST00000393824 C9orf116Q5BN46 136 aaPredicted RBP7.45□□□□□ -1.22
CUX1-204ENST00000393824 PRO0255Q9UI72 69 aa7.45□□□□□ -1.22
CUX1-204ENST00000393824 TENM2Q9NT68 2774 aa7.44□□□□□ -1.22
CUX1-204ENST00000393824 A0A0J9YWU9 116 aa7.44□□□□□ -1.22
CUX1-204ENST00000393824 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.44□□□□□ -1.22
CUX1-204ENST00000393824 SCXQ7RTU7 201 aa7.44□□□□□ -1.22
CUX1-204ENST00000393824 Q6ZTC4 211 aa7.44□□□□□ -1.22
CUX1-204ENST00000393824 LINC00269Q8N2A0 174 aa7.44□□□□□ -1.22
CUX1-204ENST00000393824 OCR1Q9BZK8 76 aa7.44□□□□□ -1.22
CUX1-204ENST00000393824 PRYO14603 147 aa7.43□□□□□ -1.22
CUX1-204ENST00000393824 DAD1P61803 113 aa7.43□□□□□ -1.22
CUX1-204ENST00000393824 CLPSL2Q6UWE3 100 aa7.43□□□□□ -1.22
CUX1-204ENST00000393824 CHCHD10Q8WYQ3 142 aaPredicted RBP7.43□□□□□ -1.22
CUX1-204ENST00000393824 FUSP35637 526 aaKnown RBP eCLIP7.41□□□□□ -1.225e-7■■■■□ 23.7
CUX1-204ENST00000393824 MRPL55Q7Z7F7 128 aaKnown RBP7.41□□□□□ -1.22
CUX1-204ENST00000393824 COX7BP24311 80 aa7.41□□□□□ -1.22
CUX1-204ENST00000393824 IGKV4-1P06312 121 aa7.4□□□□□ -1.22
CUX1-204ENST00000393824 LYRM9A8MSI8 78 aa7.4□□□□□ -1.23
CUX1-204ENST00000393824 DIRC1Q969H9 104 aa7.4□□□□□ -1.23
CUX1-204ENST00000393824 SPART-AS1P0CW21 52 aa7.39□□□□□ -1.23
CUX1-204ENST00000393824 HTN3P15516 51 aa7.39□□□□□ -1.23
CUX1-204ENST00000393824 REG3AQ06141 175 aa7.39□□□□□ -1.23
CUX1-204ENST00000393824 Q1T7F1 81 aa7.39□□□□□ -1.23
CUX1-204ENST00000393824 B9D2Q9BPU9 175 aa7.39□□□□□ -1.23
CUX1-204ENST00000393824 DNAH7Q8WXX0 4024 aa7.38□□□□□ -1.23
CUX1-204ENST00000393824 C10orf25Q5T742 122 aa7.38□□□□□ -1.23
CUX1-204ENST00000393824 GVQW2A0A096LPI5 108 aaPredicted RBP7.38□□□□□ -1.23
CUX1-204ENST00000393824 UNQ6190/PRO20217Q6UXQ8 127 aa7.38□□□□□ -1.23
CUX1-204ENST00000393824 STARD9Q9P2P6 4700 aa7.37□□□□□ -1.23
CUX1-204ENST00000393824 ANGP03950 147 aaKnown RBP7.37□□□□□ -1.23
CUX1-204ENST00000393824 ELOF1P60002 83 aaKnown RBP7.37□□□□□ -1.23
CUX1-204ENST00000393824 A0A096LPF7 62 aa7.36□□□□□ -1.23
CUX1-204ENST00000393824 ZNF73O43830 326 aaPredicted RBP7.36□□□□□ -1.23
CUX1-204ENST00000393824 IGLV10-54A0A075B6I4 117 aa7.36□□□□□ -1.23
CUX1-204ENST00000393824 Q8N9L7 120 aa7.36□□□□□ -1.23
CUX1-204ENST00000393824 PLECQ15149 4684 aaKnown RBP7.36□□□□□ -1.23
CUX1-204ENST00000393824 SPAG11BQ08648 103 aa7.35□□□□□ -1.23
CUX1-204ENST00000393824 HIGD2AQ9BW72 106 aa7.35□□□□□ -1.23
CUX1-204ENST00000393824 hDV103S1A0JD37 113 aa7.35□□□□□ -1.23
CUX1-204ENST00000393824 C4orf48Q5BLP8 95 aa7.35□□□□□ -1.23
CUX1-204ENST00000393824 C11orf45Q8TAV5 145 aa7.35□□□□□ -1.23
CUX1-204ENST00000393824 Q6ZRP5 223 aa7.34□□□□□ -1.23
CUX1-204ENST00000393824 LCE6AA0A183 80 aa7.34□□□□□ -1.23
CUX1-204ENST00000393824 RBM12B-AS1Q9P1G2 102 aa7.33□□□□□ -1.24
CUX1-204ENST00000393824 LELP1Q5T871 98 aa7.32□□□□□ -1.24
CUX1-204ENST00000393824 PRR34Q9NV39 138 aa7.32□□□□□ -1.24
CUX1-204ENST00000393824 DYNC2H1Q8NCM8 4307 aaKnown RBP7.32□□□□□ -1.24
CUX1-204ENST00000393824 HIGD2BQ4VC39 106 aa7.31□□□□□ -1.24
CUX1-204ENST00000393824 KTN1-AS1Q86SY8 53 aa7.31□□□□□ -1.24
CUX1-204ENST00000393824 DEFB131BA0A096LNP1 70 aa7.3□□□□□ -1.24
CUX1-204ENST00000393824 LINC00528Q8N1L1 170 aa7.3□□□□□ -1.24
CUX1-204ENST00000393824 DNAH1Q9P2D7 4330 aa7.3□□□□□ -1.24
CUX1-204ENST00000393824 PSPHP1O15172 72 aa7.29□□□□□ -1.24
CUX1-204ENST00000393824 XAGE1AQ9HD64 81 aa7.29□□□□□ -1.24
CUX1-204ENST00000393824 C6orf48Q9UBA6 75 aa7.29□□□□□ -1.24
CUX1-204ENST00000393824 A0A1B0GW54 56 aa7.28□□□□□ -1.24
CUX1-204ENST00000393824 LRCOL1A6NCL2 159 aa7.28□□□□□ -1.24
CUX1-204ENST00000393824 C1orf64Q8NEQ6 169 aa7.28□□□□□ -1.24
CUX1-204ENST00000393824 ZCCHC13Q8WW36 166 aaKnown RBP7.28□□□□□ -1.24
CUX1-204ENST00000393824 TRAV22A0A0B4J277 110 aa7.28□□□□□ -1.24
CUX1-204ENST00000393824 VPREB1P12018 145 aa7.28□□□□□ -1.24
CUX1-204ENST00000393824 KLK12Q9UKR0 248 aa7.27□□□□□ -1.25
CUX1-204ENST00000393824 SMIM29Q86T20 159 aa7.27□□□□□ -1.25
CUX1-204ENST00000393824 LINC00588Q9Y4M8 146 aa7.27□□□□□ -1.25
CUX1-204ENST00000393824 M0R378 163 aa7.26□□□□□ -1.25
CUX1-204ENST00000393824 UBE2BP63146 152 aa7.26□□□□□ -1.25
CUX1-204ENST00000393824 IGLV5-48A0A075B6I7 105 aa7.26□□□□□ -1.25
CUX1-204ENST00000393824 C3orf84H3BNL1 204 aa7.26□□□□□ -1.25
CUX1-204ENST00000393824 FAM30AQ9NZY2 134 aa7.26□□□□□ -1.25
CUX1-204ENST00000393824 SYCNQ0VAF6 134 aa7.25□□□□□ -1.25
CUX1-204ENST00000393824 CYP4F30PQ9H0H9 118 aa7.25□□□□□ -1.25
CUX1-204ENST00000393824 KMT2AQ03164 3969 aa7.24□□□□□ -1.25
CUX1-204ENST00000393824 DNAH10Q8IVF4 4471 aa7.22□□□□□ -1.25
CUX1-204ENST00000393824 NDUFS5O43920 106 aa7.22□□□□□ -1.25
CUX1-204ENST00000393824 ETDCA0A1B0GVM5 59 aa7.21□□□□□ -1.26
CUX1-204ENST00000393824 A8MU10 97 aa7.21□□□□□ -1.26
CUX1-204ENST00000393824 A8MUN3 132 aa7.21□□□□□ -1.26
CUX1-204ENST00000393824 H3BNG1 76 aa7.21□□□□□ -1.26
CUX1-204ENST00000393824 WFDC10BQ8IUB3 73 aa7.21□□□□□ -1.26
CUX1-204ENST00000393824 Q8N377 158 aa7.21□□□□□ -1.26
CUX1-204ENST00000393824 CAMK2N2Q96S95 79 aa7.2□□□□□ -1.26
CUX1-204ENST00000393824 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.19□□□□□ -1.26
CUX1-204ENST00000393824 VPS13DQ5THJ4 4388 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms