RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 ARHGEF5Q12774 1597 aa-0.05□□□□□ -2.42
VPS13A-206ENST00000376646 LOC285095A0A1B0GVY8 99 aa-0.06□□□□□ -2.42
VPS13A-206ENST00000376646 DCDP81605 110 aaKnown RBP-0.06□□□□□ -2.42
VPS13A-206ENST00000376646 ABCA6Q8N139 1617 aa-0.06□□□□□ -2.42
VPS13A-206ENST00000376646 KNDC1Q76NI1 1749 aa-0.06□□□□□ -2.42
VPS13A-206ENST00000376646 PKD1L3Q7Z443 1732 aa-0.06□□□□□ -2.42
VPS13A-206ENST00000376646 BTAF1O14981 1849 aa-0.06□□□□□ -2.42
VPS13A-206ENST00000376646 HUWE1Q7Z6Z7 4374 aaKnown RBP-0.06□□□□□ -2.42
VPS13A-206ENST00000376646 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.06□□□□□ -2.42
VPS13A-206ENST00000376646 FAM24AA6NFZ4 105 aa-0.06□□□□□ -2.42
VPS13A-206ENST00000376646 SPRR1AP35321 89 aa-0.06□□□□□ -2.42
VPS13A-206ENST00000376646 DPH3P1Q9H4G8 78 aa-0.06□□□□□ -2.42
VPS13A-206ENST00000376646 SAMD9Q5K651 1589 aa-0.06□□□□□ -2.42
VPS13A-206ENST00000376646 MAST1Q9Y2H9 1570 aa-0.06□□□□□ -2.42
VPS13A-206ENST00000376646 TRBV6-1A0A0K0K1D8 114 aa-0.07□□□□□ -2.42
VPS13A-206ENST00000376646 PRM1P04553 51 aa-0.07□□□□□ -2.42
VPS13A-206ENST00000376646 GNG11P61952 73 aa-0.07□□□□□ -2.42
VPS13A-206ENST00000376646 KRTAP6-1Q3LI64 71 aa-0.07□□□□□ -2.42
VPS13A-206ENST00000376646 UQCR10Q9UDW1 63 aa-0.07□□□□□ -2.42
VPS13A-206ENST00000376646 DNAH6Q9C0G6 4158 aa-0.07□□□□□ -2.42
VPS13A-206ENST00000376646 MAP3K1Q13233 1512 aa-0.07□□□□□ -2.42
VPS13A-206ENST00000376646 UBR1Q8IWV7 1749 aa-0.07□□□□□ -2.42
VPS13A-206ENST00000376646 F6UZH7 168 aa-0.07□□□□□ -2.42
VPS13A-206ENST00000376646 S100A1P23297 94 aa-0.07□□□□□ -2.42
VPS13A-206ENST00000376646 GNG4P50150 75 aa-0.07□□□□□ -2.42
VPS13A-206ENST00000376646 PIGYQ3MUY2 71 aa-0.07□□□□□ -2.42
VPS13A-206ENST00000376646 CDC42SE2Q9NRR3 84 aa-0.07□□□□□ -2.42
VPS13A-206ENST00000376646 ITSN1Q15811 1721 aa-0.07□□□□□ -2.42
VPS13A-206ENST00000376646 KIF14Q15058 1648 aa-0.07□□□□□ -2.42
VPS13A-206ENST00000376646 C3P01024 1663 aa-0.08□□□□□ -2.42
VPS13A-206ENST00000376646 EIF4G3O43432 1585 aaKnown RBP-0.08□□□□□ -2.42
VPS13A-206ENST00000376646 GLI2P10070 1586 aa-0.08□□□□□ -2.42
VPS13A-206ENST00000376646 CORTO00230 105 aa-0.08□□□□□ -2.42
VPS13A-206ENST00000376646 MGPP08493 103 aa-0.08□□□□□ -2.42
VPS13A-206ENST00000376646 IGLC1P0CG04 106 aa-0.08□□□□□ -2.42
VPS13A-206ENST00000376646 ATP5EP56381 51 aaPredicted RBP-0.08□□□□□ -2.42
VPS13A-206ENST00000376646 PPP3R1P63098 170 aa-0.08□□□□□ -2.42
VPS13A-206ENST00000376646 SVBPQ8N300 66 aa-0.08□□□□□ -2.42
VPS13A-206ENST00000376646 NXT2Q9NPJ8 142 aaKnown RBP-0.08□□□□□ -2.42
VPS13A-206ENST00000376646 MANBALQ9NQG1 85 aa-0.08□□□□□ -2.42
VPS13A-206ENST00000376646 FAIMQ9NVQ4 179 aa-0.08□□□□□ -2.42
VPS13A-206ENST00000376646 ARL2-SNX15V9GYD0 113 aa-0.08□□□□□ -2.42
VPS13A-206ENST00000376646 PRDM15P57071 1507 aaPredicted RBP-0.08□□□□□ -2.42
VPS13A-206ENST00000376646 SCAPERQ9BY12 1400 aa-0.08□□□□□ -2.42
VPS13A-206ENST00000376646 FAM223AQ8IWN6 122 aa-0.08□□□□□ -2.42
VPS13A-206ENST00000376646 GNG8Q9UK08 70 aa-0.08□□□□□ -2.42
VPS13A-206ENST00000376646 IER3IP1Q9Y5U9 82 aa-0.08□□□□□ -2.42
VPS13A-206ENST00000376646 NSD3Q9BZ95 1437 aa-0.09□□□□□ -2.42
VPS13A-206ENST00000376646 LINC00587B1AMM8 73 aa-0.09□□□□□ -2.42
VPS13A-206ENST00000376646 UBA52P62987 128 aaKnown RBP-0.09□□□□□ -2.42
VPS13A-206ENST00000376646 SFTA2Q6UW10 78 aa-0.09□□□□□ -2.42
VPS13A-206ENST00000376646 C2orf88Q9BSF0 95 aa-0.09□□□□□ -2.42
VPS13A-206ENST00000376646 CRIPTQ9P021 101 aa-0.09□□□□□ -2.42
VPS13A-206ENST00000376646 NCOA3Q9Y6Q9 1424 aa-0.09□□□□□ -2.42
VPS13A-206ENST00000376646 UBR3Q6ZT12 1888 aa-0.09□□□□□ -2.42
VPS13A-206ENST00000376646 MAGI1Q96QZ7 1491 aaPredicted RBP-0.09□□□□□ -2.42
VPS13A-206ENST00000376646 NEXMIFQ5QGS0 1516 aa-0.09□□□□□ -2.42
VPS13A-206ENST00000376646 UGGT2Q9NYU1 1516 aa-0.09□□□□□ -2.42
VPS13A-206ENST00000376646 Q0VG73 95 aa-0.1□□□□□ -2.42
VPS13A-206ENST00000376646 FAM167A-AS1Q96KT0 104 aa-0.1□□□□□ -2.42
VPS13A-206ENST00000376646 SCN7AQ01118 1682 aa-0.1□□□□□ -2.43
VPS13A-206ENST00000376646 NHSQ6T4R5 1651 aa-0.1□□□□□ -2.43
VPS13A-206ENST00000376646 DNAH17Q9UFH2 4485 aa-0.1□□□□□ -2.43
VPS13A-206ENST00000376646 C10orf113Q5VZT2 155 aa-0.1□□□□□ -2.43
VPS13A-206ENST00000376646 TMEM263Q8WUH6 116 aaKnown RBP-0.1□□□□□ -2.43
VPS13A-206ENST00000376646 LCN9Q8WX39 176 aa-0.1□□□□□ -2.43
VPS13A-206ENST00000376646 SPRR4Q96PI1 79 aa-0.1□□□□□ -2.43
VPS13A-206ENST00000376646 POLA1P09884 1462 aaPredicted RBP-0.1□□□□□ -2.43
VPS13A-206ENST00000376646 PZPP20742 1482 aa-0.1□□□□□ -2.43
VPS13A-206ENST00000376646 C5P01031 1676 aa-0.1□□□□□ -2.43
VPS13A-206ENST00000376646 ITSN2Q9NZM3 1697 aa-0.1□□□□□ -2.43
VPS13A-206ENST00000376646 DNAH11Q96DT5 4516 aa-0.1□□□□□ -2.43
VPS13A-206ENST00000376646 WHAMMP3Q1A5X7 153 aa-0.11□□□□□ -2.43
VPS13A-206ENST00000376646 KRTAP19-7Q3SYF9 63 aa-0.11□□□□□ -2.43
VPS13A-206ENST00000376646 TMEM203Q969S6 136 aa-0.11□□□□□ -2.43
VPS13A-206ENST00000376646 NFAT5O94916 1531 aa-0.11□□□□□ -2.43
VPS13A-206ENST00000376646 MAGI3Q5TCQ9 1506 aa-0.11□□□□□ -2.43
VPS13A-206ENST00000376646 TIAM1Q13009 1591 aa-0.11□□□□□ -2.43
VPS13A-206ENST00000376646 NAP1L6A6NFF2 107 aa-0.11□□□□□ -2.43
VPS13A-206ENST00000376646 SNCAP37840 140 aa-0.11□□□□□ -2.43
VPS13A-206ENST00000376646 UBE2D3P61077 147 aa-0.11□□□□□ -2.43
VPS13A-206ENST00000376646 UBE2D2P62837 147 aa-0.11□□□□□ -2.43
VPS13A-206ENST00000376646 KLK9Q2XQG4 91 aa-0.11□□□□□ -2.43
VPS13A-206ENST00000376646 ZFYVE16Q7Z3T8 1539 aa-0.11□□□□□ -2.43
VPS13A-206ENST00000376646 ARHGAP5Q13017 1502 aa-0.12□□□□□ -2.43
VPS13A-206ENST00000376646 TRAPPC2P0DI81 140 aa-0.12□□□□□ -2.43
VPS13A-206ENST00000376646 TRAPPC2BP0DI82 140 aa-0.12□□□□□ -2.43
VPS13A-206ENST00000376646 FDCSPQ8NFU4 85 aa-0.12□□□□□ -2.43
VPS13A-206ENST00000376646 PRO1854Q9UHT4 67 aa-0.12□□□□□ -2.43
VPS13A-206ENST00000376646 ANKRD36A6QL64 1941 aa-0.12□□□□□ -2.43
VPS13A-206ENST00000376646 SCN11AQ9UI33 1791 aa-0.12□□□□□ -2.43
VPS13A-206ENST00000376646 CRYM-AS1A6NIL9 109 aa-0.12□□□□□ -2.43
VPS13A-206ENST00000376646 COX6CP09669 75 aa-0.12□□□□□ -2.43
VPS13A-206ENST00000376646 COX6B1P14854 86 aa-0.12□□□□□ -2.43
VPS13A-206ENST00000376646 MT1HP80294 61 aa-0.12□□□□□ -2.43
VPS13A-206ENST00000376646 MRPS10P82664 201 aaKnown RBP-0.12□□□□□ -2.43
VPS13A-206ENST00000376646 KRTAP6-2Q3LI66 62 aa-0.12□□□□□ -2.43
VPS13A-206ENST00000376646 LRRC37AA6NMS7 1700 aa-0.12□□□□□ -2.43
VPS13A-206ENST00000376646 LTN1O94822 1766 aa-0.12□□□□□ -2.43
VPS13A-206ENST00000376646 FAM223BA6NKX1 122 aa-0.13□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 435.1 ms