RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 TRBV7-4A0A0J9YYF1 115 aa3.15□□□□□ -1.9
SCN1A-202ENST00000375405 ADAMTSL4-AS1Q5T5F5 129 aa3.15□□□□□ -1.9
SCN1A-202ENST00000375405 S4R3F8 94 aa3.15□□□□□ -1.91
SCN1A-202ENST00000375405 FAM168BA1KXE4 195 aa3.15□□□□□ -1.91
SCN1A-202ENST00000375405 H7BZZ5 65 aa3.15□□□□□ -1.91
SCN1A-202ENST00000375405 IGLV1-51P01701 117 aa3.15□□□□□ -1.91
SCN1A-202ENST00000375405 ELOF1P60002 83 aaKnown RBP3.15□□□□□ -1.91
SCN1A-202ENST00000375405 ROMO1P60602 79 aa3.14□□□□□ -1.91
SCN1A-202ENST00000375405 COL27A1Q8IZC6 1860 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-202ENST00000375405 C9orf163Q8N9P6 203 aa3.14□□□□□ -1.91
SCN1A-202ENST00000375405 C20orf166-AS1Q96NR2 134 aa3.14□□□□□ -1.91
SCN1A-202ENST00000375405 KRTAP10-9P60411 292 aa3.13□□□□□ -1.91
SCN1A-202ENST00000375405 A0A1W2PNN7 141 aa3.13□□□□□ -1.91
SCN1A-202ENST00000375405 A0A1W2PNU3 283 aaPredicted RBP3.13□□□□□ -1.91
SCN1A-202ENST00000375405 LCA10Q71F78 164 aa3.13□□□□□ -1.91
SCN1A-202ENST00000375405 DNAH10OSP0CZ25 163 aa3.13□□□□□ -1.91
SCN1A-202ENST00000375405 ODF3L2Q3SX64 289 aa3.13□□□□□ -1.91
SCN1A-202ENST00000375405 CRIP3Q6Q6R5 217 aa3.13□□□□□ -1.91
SCN1A-202ENST00000375405 URB1-AS1Q96HZ7 61 aa3.13□□□□□ -1.91
SCN1A-202ENST00000375405 CSAG1Q6PB30 78 aa3.13□□□□□ -1.91
SCN1A-202ENST00000375405 ANKRD17O75179 2603 aaKnown RBP3.13□□□□□ -1.91
SCN1A-202ENST00000375405 LINC00310P59036 64 aa3.12□□□□□ -1.91
SCN1A-202ENST00000375405 CHD8Q9HCK8 2581 aa3.12□□□□□ -1.91
SCN1A-202ENST00000375405 A0A1B0GUV1 79 aa3.12□□□□□ -1.91
SCN1A-202ENST00000375405 Q6ZRX8 168 aa3.12□□□□□ -1.91
SCN1A-202ENST00000375405 CYP4F30PQ9H0H9 118 aa3.12□□□□□ -1.91
SCN1A-202ENST00000375405 IGFL2Q6UWQ7 119 aa3.12□□□□□ -1.91
SCN1A-202ENST00000375405 FBXL19-AS1Q494R0 122 aa3.11□□□□□ -1.91
SCN1A-202ENST00000375405 A0A1B0GU33 70 aa3.11□□□□□ -1.91
SCN1A-202ENST00000375405 Q8N377 158 aa3.1□□□□□ -1.91
SCN1A-202ENST00000375405 IGIPA6NJ69 53 aa3.1□□□□□ -1.91
SCN1A-202ENST00000375405 KLLNB2CW77 178 aa3.1□□□□□ -1.91
SCN1A-202ENST00000375405 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.1□□□□□ -1.91
SCN1A-202ENST00000375405 A0A1B0GVX0 72 aa3.1□□□□□ -1.91
SCN1A-202ENST00000375405 H3BNG1 76 aa3.1□□□□□ -1.91
SCN1A-202ENST00000375405 ZNF861PO60384 105 aa3.1□□□□□ -1.91
SCN1A-202ENST00000375405 WDR87Q6ZQQ6 2873 aa3.09□□□□□ -1.91
SCN1A-202ENST00000375405 COL4A4P53420 1690 aaPredicted RBP3.09□□□□□ -1.91
SCN1A-202ENST00000375405 KLK9Q2XQG4 91 aa3.09□□□□□ -1.91
SCN1A-202ENST00000375405 IGFL1Q6UW32 110 aa3.09□□□□□ -1.92
SCN1A-202ENST00000375405 M0QZ58 72 aa3.08□□□□□ -1.92
SCN1A-202ENST00000375405 SEC61BP60468 96 aaKnown RBP3.08□□□□□ -1.92
SCN1A-202ENST00000375405 AVPP01185 164 aa3.08□□□□□ -1.92
SCN1A-202ENST00000375405 IGLV7-43P04211 117 aa3.08□□□□□ -1.92
SCN1A-202ENST00000375405 C16orf95Q9H693 158 aa3.08□□□□□ -1.92
SCN1A-202ENST00000375405 PRR15Q8IV56 129 aa3.07□□□□□ -1.92
SCN1A-202ENST00000375405 A0A0G2JQZ4 141 aa3.07□□□□□ -1.92
SCN1A-202ENST00000375405 KRTAP24-1Q3LI83 254 aa3.07□□□□□ -1.92
SCN1A-202ENST00000375405 FAM218AQ96MZ4 157 aa3.06□□□□□ -1.92
SCN1A-202ENST00000375405 HECTD1Q9ULT8 2610 aa3.05□□□□□ -1.92
SCN1A-202ENST00000375405 A0A096LNJ9 63 aa3.05□□□□□ -1.92
SCN1A-202ENST00000375405 MGAM2Q2M2H8 2515 aa3.05□□□□□ -1.92
SCN1A-202ENST00000375405 SMCPP49901 116 aaPredicted RBP3.05□□□□□ -1.92
SCN1A-202ENST00000375405 C15orf56Q8N910 161 aa3.05□□□□□ -1.92
SCN1A-202ENST00000375405 DMAC1Q96GE9 116 aa3.05□□□□□ -1.92
SCN1A-202ENST00000375405 CDSNQ15517 529 aa3.04□□□□□ -1.92
SCN1A-202ENST00000375405 Q8N9P0 234 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-202ENST00000375405 A0A087WTM6 91 aa3.04□□□□□ -1.92
SCN1A-202ENST00000375405 GVQW2A0A096LPI5 108 aaPredicted RBP3.04□□□□□ -1.92
SCN1A-202ENST00000375405 A0A1B0GW54 56 aa3.03□□□□□ -1.92
SCN1A-202ENST00000375405 SPATA8Q6RVD6 105 aa3.03□□□□□ -1.92
SCN1A-202ENST00000375405 CFAP46Q8IYW2 2715 aa3.03□□□□□ -1.92
SCN1A-202ENST00000375405 KLKP1Q107X0 134 aa3.02□□□□□ -1.93
SCN1A-202ENST00000375405 Q8NAQ8 132 aa3.02□□□□□ -1.93
SCN1A-202ENST00000375405 C10orf142B7Z368 130 aa3.01□□□□□ -1.93
SCN1A-202ENST00000375405 CNFNQ9BYD5 112 aa3.01□□□□□ -1.93
SCN1A-202ENST00000375405 LINC01546A6NGU7 62 aa3.01□□□□□ -1.93
SCN1A-202ENST00000375405 KRTAP16-1A8MUX0 517 aa3.01□□□□□ -1.93
SCN1A-202ENST00000375405 LINC00612Q8N6U2 182 aa3□□□□□ -1.93
SCN1A-202ENST00000375405 STAB2Q8WWQ8 2551 aa3□□□□□ -1.93
SCN1A-202ENST00000375405 ADM2Q7Z4H4 148 aa2.99□□□□□ -1.93
SCN1A-202ENST00000375405 LOC110117498A0A087WWA1 95 aa2.99□□□□□ -1.93
SCN1A-202ENST00000375405 EIF4EBP3O60516 100 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-202ENST00000375405 ZCCHC13Q8WW36 166 aaKnown RBP2.98□□□□□ -1.93
SCN1A-202ENST00000375405 ATRQ13535 2644 aa2.98□□□□□ -1.93
SCN1A-202ENST00000375405 MUC22E2RYF6 1773 aaPredicted RBP2.98□□□□□ -1.93
SCN1A-202ENST00000375405 K7EIL1 84 aa2.97□□□□□ -1.93
SCN1A-202ENST00000375405 Q8NDZ9 215 aa2.97□□□□□ -1.93
SCN1A-202ENST00000375405 PRAC1Q96KF2 57 aa2.97□□□□□ -1.93
SCN1A-202ENST00000375405 GOLGB1Q14789 3259 aaKnown RBP2.97□□□□□ -1.93
SCN1A-202ENST00000375405 FP248Q71RG6 208 aaPredicted RBP2.97□□□□□ -1.93
SCN1A-202ENST00000375405 C10orf95Q9H7T3 257 aa2.96□□□□□ -1.93
SCN1A-202ENST00000375405 CEP295Q9C0D2 2601 aa2.96□□□□□ -1.94
SCN1A-202ENST00000375405 MAST4O15021 2626 aa2.96□□□□□ -1.94
SCN1A-202ENST00000375405 TNP2Q05952 138 aa2.95□□□□□ -1.94
SCN1A-202ENST00000375405 NOTCH1P46531 2555 aa2.95□□□□□ -1.94
SCN1A-202ENST00000375405 SPRR4Q96PI1 79 aa2.95□□□□□ -1.94
SCN1A-202ENST00000375405 RPL37P61927 97 aaKnown RBP2.94□□□□□ -1.94
SCN1A-202ENST00000375405 CASC10Q5T4H9 136 aa2.94□□□□□ -1.94
SCN1A-202ENST00000375405 KRTAP10-11P60412 298 aa2.93□□□□□ -1.94
SCN1A-202ENST00000375405 C19orf73Q9NVV2 129 aa2.93□□□□□ -1.94
SCN1A-202ENST00000375405 OXTP01178 125 aa2.91□□□□□ -1.94
SCN1A-202ENST00000375405 PCNTO95613 3336 aa2.91□□□□□ -1.94
SCN1A-202ENST00000375405 A0A1W2PPR1 153 aa2.91□□□□□ -1.94
SCN1A-202ENST00000375405 KCNQ1DNQ9H478 68 aa2.91□□□□□ -1.94
SCN1A-202ENST00000375405 PLAC8Q9NZF1 115 aa2.91□□□□□ -1.94
SCN1A-202ENST00000375405 Q6ZR54 194 aa2.91□□□□□ -1.94
SCN1A-202ENST00000375405 COX8CQ7Z4L0 72 aa2.9□□□□□ -1.94
SCN1A-202ENST00000375405 AKAP13Q12802 2813 aa2.9□□□□□ -1.95
SCN1A-202ENST00000375405 PRRC2CQ9Y520 2896 aaKnown RBP2.9□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms