RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 LINC00336Q6ZUF6 198 aa13.89□□□□□ -0.19
UPF3A-202ENST00000375299 NOTCH2Q04721 2471 aa13.88□□□□□ -0.19
UPF3A-202ENST00000375299 Q6ZRP5 223 aa13.88□□□□□ -0.19
UPF3A-202ENST00000375299 C3orf84H3BNL1 204 aa13.87□□□□□ -0.19
UPF3A-202ENST00000375299 A0A0U1RQV1 116 aa13.86□□□□□ -0.19
UPF3A-202ENST00000375299 PRYO14603 147 aa13.85□□□□□ -0.19
UPF3A-202ENST00000375299 LINC00474Q9P2X8 69 aa13.85□□□□□ -0.19
UPF3A-202ENST00000375299 PRO0628Q9UI54 55 aa13.85□□□□□ -0.19
UPF3A-202ENST00000375299 KPRPQ5T749 579 aaPredicted RBP13.85□□□□□ -0.19
UPF3A-202ENST00000375299 Q8N377 158 aa13.83□□□□□ -0.2
UPF3A-202ENST00000375299 KCNQ1DNQ9H478 68 aa13.83□□□□□ -0.2
UPF3A-202ENST00000375299 H3BNG1 76 aa13.82□□□□□ -0.2
UPF3A-202ENST00000375299 DEFB105AQ8NG35 78 aa13.82□□□□□ -0.2
UPF3A-202ENST00000375299 IGLV5-48A0A075B6I7 105 aa13.81□□□□□ -0.2
UPF3A-202ENST00000375299 ATRQ13535 2644 aa13.81□□□□□ -0.2
UPF3A-202ENST00000375299 NKAPP1Q8N9T2 125 aa13.81□□□□□ -0.2
UPF3A-202ENST00000375299 C1orf43Q9BWL3 253 aa13.8□□□□□ -0.2
UPF3A-202ENST00000375299 TEP1Q99973 2627 aaKnown RBP13.8□□□□□ -0.2
UPF3A-202ENST00000375299 TRRAPQ9Y4A5 3859 aa13.8□□□□□ -0.2
UPF3A-202ENST00000375299 F8WDY8 70 aa13.8□□□□□ -0.2
UPF3A-202ENST00000375299 HIVEP1P15822 2718 aa13.79□□□□□ -0.2
UPF3A-202ENST00000375299 SYCNQ0VAF6 134 aa13.79□□□□□ -0.2
UPF3A-202ENST00000375299 C7orf33Q8WU49 177 aa13.79□□□□□ -0.2
UPF3A-202ENST00000375299 SERTAD4-AS1Q5TG53 156 aa13.78□□□□□ -0.2
UPF3A-202ENST00000375299 FUSP35637 526 aaKnown RBP eCLIP13.76□□□□□ -0.21
UPF3A-202ENST00000375299 FAM229BQ4G0N7 80 aa13.76□□□□□ -0.21
UPF3A-202ENST00000375299 HIGD2AQ9BW72 106 aa13.76□□□□□ -0.21
UPF3A-202ENST00000375299 IGKV2D-24A0A075B6R9 120 aa13.75□□□□□ -0.21
UPF3A-202ENST00000375299 A0A1B0GW54 56 aa13.75□□□□□ -0.21
UPF3A-202ENST00000375299 ESRGQ1W209 222 aa13.74□□□□□ -0.21
UPF3A-202ENST00000375299 SMIM29Q86T20 159 aa13.73□□□□□ -0.21
UPF3A-202ENST00000375299 DHRS4-AS1Q9P1J3 65 aa13.73□□□□□ -0.21
UPF3A-202ENST00000375299 A0A1W2PNM2 257 aa13.73□□□□□ -0.21
UPF3A-202ENST00000375299 Q6ZTC4 211 aa13.73□□□□□ -0.21
UPF3A-202ENST00000375299 Q6ZRX8 168 aa13.71□□□□□ -0.21
UPF3A-202ENST00000375299 RETNQ9HD89 108 aa13.71□□□□□ -0.21
UPF3A-202ENST00000375299 LINC01556Q5JQF7 62 aa13.71□□□□□ -0.22
UPF3A-202ENST00000375299 FAM30AQ9NZY2 134 aa13.71□□□□□ -0.22
UPF3A-202ENST00000375299 TNP2Q05952 138 aa13.7□□□□□ -0.22
UPF3A-202ENST00000375299 Q9BRP9 147 aa13.69□□□□□ -0.22
UPF3A-202ENST00000375299 C1orf137Q5JT78 98 aa13.68□□□□□ -0.22
UPF3A-202ENST00000375299 PLA2G2DQ9UNK4 145 aa13.68□□□□□ -0.22
UPF3A-202ENST00000375299 KRTAP4-16G5E9R7 235 aaPredicted RBP13.67□□□□□ -0.22
UPF3A-202ENST00000375299 Q8NBF4 154 aa13.67□□□□□ -0.22
UPF3A-202ENST00000375299 LCE6AA0A183 80 aa13.66□□□□□ -0.22
UPF3A-202ENST00000375299 RPL37AP8A6NKH3 93 aa13.66□□□□□ -0.22
UPF3A-202ENST00000375299 TLX1NBP0CAT3 122 aa13.66□□□□□ -0.22
UPF3A-202ENST00000375299 MPLKIPQ8TAP9 179 aa13.66□□□□□ -0.22
UPF3A-202ENST00000375299 ETDCA0A1B0GVM5 59 aa13.65□□□□□ -0.22
UPF3A-202ENST00000375299 OXLD1Q5BKU9 147 aa13.65□□□□□ -0.22
UPF3A-202ENST00000375299 SPRR1AP35321 89 aa13.64□□□□□ -0.23
UPF3A-202ENST00000375299 ST20-AS1Q8NBB2 130 aa13.64□□□□□ -0.23
UPF3A-202ENST00000375299 IGLV1-50A0A075B6I6 118 aa13.64□□□□□ -0.23
UPF3A-202ENST00000375299 SPRR4Q96PI1 79 aa13.63□□□□□ -0.23
UPF3A-202ENST00000375299 IGLV5-37A0A075B6J1 123 aa13.63□□□□□ -0.23
UPF3A-202ENST00000375299 KRTAP10-11P60412 298 aa13.63□□□□□ -0.23
UPF3A-202ENST00000375299 FAM168BA1KXE4 195 aa13.61□□□□□ -0.23
UPF3A-202ENST00000375299 BRK1Q8WUW1 75 aa13.61□□□□□ -0.23
UPF3A-202ENST00000375299 DSCR10P59022 87 aa13.6□□□□□ -0.23
UPF3A-202ENST00000375299 BAHCC1Q9P281 2608 aa13.59□□□□□ -0.23
UPF3A-202ENST00000375299 PKD1L1Q8TDX9 2849 aa13.57□□□□□ -0.24
UPF3A-202ENST00000375299 K7EQZ3 153 aa13.57□□□□□ -0.24
UPF3A-202ENST00000375299 ZCCHC13Q8WW36 166 aaKnown RBP13.57□□□□□ -0.24
UPF3A-202ENST00000375299 DEFB131BA0A096LNP1 70 aa13.56□□□□□ -0.24
UPF3A-202ENST00000375299 DNAH10OSP0CZ25 163 aa13.56□□□□□ -0.24
UPF3A-202ENST00000375299 hDV103S1A0JD37 113 aa13.56□□□□□ -0.24
UPF3A-202ENST00000375299 KRTAP7-1Q8IUC3 87 aa13.56□□□□□ -0.24
UPF3A-202ENST00000375299 PKIGQ9Y2B9 76 aa13.54□□□□□ -0.24
UPF3A-202ENST00000375299 FLNBO75369 2602 aaKnown RBP13.53□□□□□ -0.24
UPF3A-202ENST00000375299 UBE2BP63146 152 aa13.52□□□□□ -0.25
UPF3A-202ENST00000375299 MRPL55Q7Z7F7 128 aaKnown RBP13.51□□□□□ -0.25
UPF3A-202ENST00000375299 CASC10Q5T4H9 136 aa13.49□□□□□ -0.25
UPF3A-202ENST00000375299 ANK2Q01484 3957 aa13.49□□□□□ -0.25
UPF3A-202ENST00000375299 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.49□□□□□ -0.25
UPF3A-202ENST00000375299 HCG22E2RYF7 251 aa13.49□□□□□ -0.25
UPF3A-202ENST00000375299 C11orf45Q8TAV5 145 aa13.49□□□□□ -0.25
UPF3A-202ENST00000375299 C1orf64Q8NEQ6 169 aa13.48□□□□□ -0.25
UPF3A-202ENST00000375299 LINC00476Q8WZB0 136 aa13.48□□□□□ -0.25
UPF3A-202ENST00000375299 TENM3Q9P273 2699 aa13.48□□□□□ -0.25
UPF3A-202ENST00000375299 PSCAO43653 123 aa13.45□□□□□ -0.26
UPF3A-202ENST00000375299 REG3GQ6UW15 175 aa13.45□□□□□ -0.26
UPF3A-202ENST00000375299 DNAH1Q9P2D7 4330 aa13.44□□□□□ -0.26
UPF3A-202ENST00000375299 CMYA5Q8N3K9 4069 aa13.44□□□□□ -0.26
UPF3A-202ENST00000375299 LRCOL1A6NCL2 159 aa13.42□□□□□ -0.26
UPF3A-202ENST00000375299 KRTAP24-1Q3LI83 254 aa13.42□□□□□ -0.26
UPF3A-202ENST00000375299 Q1T7F1 81 aa13.42□□□□□ -0.26
UPF3A-202ENST00000375299 IGFL1Q6UW32 110 aa13.41□□□□□ -0.26
UPF3A-202ENST00000375299 CYP4F30PQ9H0H9 118 aa13.41□□□□□ -0.26
UPF3A-202ENST00000375299 LINC00588Q9Y4M8 146 aa13.4□□□□□ -0.26
UPF3A-202ENST00000375299 A0A0G2JQZ4 141 aa13.4□□□□□ -0.26
UPF3A-202ENST00000375299 A0A1W2PNN7 141 aa13.4□□□□□ -0.26
UPF3A-202ENST00000375299 FBN1P35555 2871 aaKnown RBP13.39□□□□□ -0.27
UPF3A-202ENST00000375299 F8P00451 2351 aa13.38□□□□□ -0.27
UPF3A-202ENST00000375299 C1orf195Q5TG92 126 aa13.37□□□□□ -0.27
UPF3A-202ENST00000375299 DEFB116Q30KQ4 102 aa13.36□□□□□ -0.27
UPF3A-202ENST00000375299 STAB1Q9NY15 2570 aa13.35□□□□□ -0.27
UPF3A-202ENST00000375299 NDUFB1O75438 58 aa13.35□□□□□ -0.27
UPF3A-202ENST00000375299 WFDC13Q8IUB5 93 aa13.35□□□□□ -0.27
UPF3A-202ENST00000375299 PRR4Q16378 134 aa13.35□□□□□ -0.27
UPF3A-202ENST00000375299 DNAH3Q8TD57 4116 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms