RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ACYP2P14621 99 aa7.71□□□□□ -1.18
PTPRF-203ENST00000372407 ST20-AS1Q8NBB2 130 aa7.71□□□□□ -1.18
PTPRF-203ENST00000372407 PHF5AQ7RTV0 110 aaKnown RBP7.7□□□□□ -1.18
PTPRF-203ENST00000372407 SPACA4Q8TDM5 124 aa7.7□□□□□ -1.18
PTPRF-203ENST00000372407 A0A1B0GU69 56 aa7.7□□□□□ -1.18
PTPRF-203ENST00000372407 C16orf90A8MZG2 172 aa7.7□□□□□ -1.18
PTPRF-203ENST00000372407 C4orf26Q17RF5 130 aa7.7□□□□□ -1.18
PTPRF-203ENST00000372407 UNC79Q9P2D8 2635 aa7.7□□□□□ -1.18
PTPRF-203ENST00000372407 VPS13AQ96RL7 3174 aa7.7□□□□□ -1.18
PTPRF-203ENST00000372407 EPM2AB3EWF7 344 aa7.69□□□□□ -1.18
PTPRF-203ENST00000372407 EIF4EBP3O60516 100 aaPredicted RBP7.69□□□□□ -1.18
PTPRF-203ENST00000372407 Q6ZRP5 223 aa7.69□□□□□ -1.18
PTPRF-203ENST00000372407 TRBV7-4A0A0J9YYF1 115 aa7.69□□□□□ -1.18
PTPRF-203ENST00000372407 LINC00588Q9Y4M8 146 aa7.69□□□□□ -1.18
PTPRF-203ENST00000372407 EYSQ5T1H1 3165 aa7.67□□□□□ -1.18
PTPRF-203ENST00000372407 DNAH10OSP0CZ25 163 aa7.66□□□□□ -1.18
PTPRF-203ENST00000372407 SPAG11AQ6PDA7 123 aa7.66□□□□□ -1.18
PTPRF-203ENST00000372407 C7orf65Q6ZTY9 151 aa7.66□□□□□ -1.18
PTPRF-203ENST00000372407 NBDYA0A0U1RRE5 68 aa7.66□□□□□ -1.18
PTPRF-203ENST00000372407 KRTAP1-1Q07627 177 aa7.66□□□□□ -1.18
PTPRF-203ENST00000372407 CSNK1G2-AS1Q8NCQ2 148 aa7.66□□□□□ -1.18
PTPRF-203ENST00000372407 SETXQ7Z333 2677 aaKnown RBP7.66□□□□□ -1.18
PTPRF-203ENST00000372407 LINC00528Q8N1L1 170 aa7.64□□□□□ -1.19
PTPRF-203ENST00000372407 ERC2-IT1O76042 136 aa7.64□□□□□ -1.19
PTPRF-203ENST00000372407 RPL37AP61513 92 aaKnown RBP7.63□□□□□ -1.19
PTPRF-203ENST00000372407 KCNQ1DNQ9H478 68 aa7.63□□□□□ -1.19
PTPRF-203ENST00000372407 CHTF8P0CG12 524 aa7.63□□□□□ -1.19
PTPRF-203ENST00000372407 LAMA1P25391 3075 aa7.63□□□□□ -1.19
PTPRF-203ENST00000372407 LINC00313P59037 77 aa7.62□□□□□ -1.19
PTPRF-203ENST00000372407 PRR34Q9NV39 138 aa7.62□□□□□ -1.19
PTPRF-203ENST00000372407 RTL8CO15255 209 aa7.61□□□□□ -1.19
PTPRF-203ENST00000372407 REV3LO60673 3130 aa7.61□□□□□ -1.19
PTPRF-203ENST00000372407 A8MWP4 228 aa7.61□□□□□ -1.19
PTPRF-203ENST00000372407 K7EQZ3 153 aa7.61□□□□□ -1.19
PTPRF-203ENST00000372407 SERTAD4-AS1Q5TG53 156 aa7.6□□□□□ -1.19
PTPRF-203ENST00000372407 IGLV1-50A0A075B6I6 118 aa7.6□□□□□ -1.19
PTPRF-203ENST00000372407 LOC101927531A0A1B0GV80 90 aa7.59□□□□□ -1.19
PTPRF-203ENST00000372407 STAB1Q9NY15 2570 aa7.59□□□□□ -1.19
PTPRF-203ENST00000372407 ATP11AUNQ6ZP68 121 aa7.59□□□□□ -1.19
PTPRF-203ENST00000372407 FRYLO94915 3013 aa7.59□□□□□ -1.19
PTPRF-203ENST00000372407 FAM168BA1KXE4 195 aa7.59□□□□□ -1.19
PTPRF-203ENST00000372407 GCN1Q92616 2671 aaKnown RBP7.59□□□□□ -1.2
PTPRF-203ENST00000372407 KLKP1Q107X0 134 aa7.58□□□□□ -1.2
PTPRF-203ENST00000372407 GIG44P09565 113 aaPredicted RBP7.58□□□□□ -1.2
PTPRF-203ENST00000372407 FAM229AH3BQW9 127 aa7.57□□□□□ -1.2
PTPRF-203ENST00000372407 SPTBN5Q9NRC6 3674 aaKnown RBP7.57□□□□□ -1.2
PTPRF-203ENST00000372407 TYMSOSQ8TAI1 123 aa7.57□□□□□ -1.2
PTPRF-203ENST00000372407 C19orf73Q9NVV2 129 aa7.57□□□□□ -1.2
PTPRF-203ENST00000372407 MRPL34Q9BQ48 92 aaKnown RBP7.56□□□□□ -1.2
PTPRF-203ENST00000372407 C8orf87E5RJ46 101 aa7.55□□□□□ -1.2
PTPRF-203ENST00000372407 DMXL2Q8TDJ6 3036 aa7.55□□□□□ -1.2
PTPRF-203ENST00000372407 LINC00612Q8N6U2 182 aa7.55□□□□□ -1.2
PTPRF-203ENST00000372407 FRYQ5TBA9 3013 aa7.55□□□□□ -1.2
PTPRF-203ENST00000372407 Q8N377 158 aa7.54□□□□□ -1.2
PTPRF-203ENST00000372407 A8MUN3 132 aa7.54□□□□□ -1.2
PTPRF-203ENST00000372407 IGFL1Q6UW32 110 aa7.54□□□□□ -1.2
PTPRF-203ENST00000372407 C15orf56Q8N910 161 aa7.53□□□□□ -1.2
PTPRF-203ENST00000372407 FLNCQ14315 2725 aa7.53□□□□□ -1.2
PTPRF-203ENST00000372407 DMXL1Q9Y485 3027 aa7.53□□□□□ -1.2
PTPRF-203ENST00000372407 PRR15Q8IV56 129 aa7.53□□□□□ -1.2
PTPRF-203ENST00000372407 CYP4F30PQ9H0H9 118 aa7.52□□□□□ -1.21
PTPRF-203ENST00000372407 COL6A5A8TX70 2615 aa7.52□□□□□ -1.21
PTPRF-203ENST00000372407 COA5Q86WW8 74 aa7.51□□□□□ -1.21
PTPRF-203ENST00000372407 KRTAP10-3P60369 221 aa7.5□□□□□ -1.21
PTPRF-203ENST00000372407 IGLV8-61A0A075B6I0 122 aa7.5□□□□□ -1.21
PTPRF-203ENST00000372407 C9orf129Q5T035 196 aaKnown RBP7.5□□□□□ -1.21
PTPRF-203ENST00000372407 Q96NJ1 140 aa7.49□□□□□ -1.21
PTPRF-203ENST00000372407 H7BZZ5 65 aa7.49□□□□□ -1.21
PTPRF-203ENST00000372407 TLX1NBP0CAT3 122 aa7.48□□□□□ -1.21
PTPRF-203ENST00000372407 LINC01600Q96MT4 127 aa7.48□□□□□ -1.21
PTPRF-203ENST00000372407 WWC2-AS2Q96NR7 200 aa7.48□□□□□ -1.21
PTPRF-203ENST00000372407 C8orf17Q9NRJ1 99 aa7.48□□□□□ -1.21
PTPRF-203ENST00000372407 SSBP3-AS1Q7Z2R9 100 aa7.48□□□□□ -1.21
PTPRF-203ENST00000372407 PLA2G2DQ9UNK4 145 aa7.47□□□□□ -1.21
PTPRF-203ENST00000372407 K7EIL1 84 aa7.47□□□□□ -1.21
PTPRF-203ENST00000372407 PLA2G1BP04054 148 aaKnown RBP7.47□□□□□ -1.21
PTPRF-203ENST00000372407 C9orf163Q8N9P6 203 aa7.47□□□□□ -1.21
PTPRF-203ENST00000372407 UQCR11O14957 56 aa7.46□□□□□ -1.22
PTPRF-203ENST00000372407 ZNF861PO60384 105 aa7.45□□□□□ -1.22
PTPRF-203ENST00000372407 MAP1AP78559 2803 aaPredicted RBP7.45□□□□□ -1.22
PTPRF-203ENST00000372407 A0A1B0GVX0 72 aa7.44□□□□□ -1.22
PTPRF-203ENST00000372407 TEX15Q9BXT5 2789 aa7.44□□□□□ -1.22
PTPRF-203ENST00000372407 KRTAP10-11P60412 298 aa7.44□□□□□ -1.22
PTPRF-203ENST00000372407 CR1P17927 2039 aa7.44□□□□□ -1.22
PTPRF-203ENST00000372407 A0A0G2JQZ4 141 aa7.43□□□□□ -1.22
PTPRF-203ENST00000372407 A0A1W2PNM2 257 aa7.43□□□□□ -1.22
PTPRF-203ENST00000372407 A0A1W2PNN7 141 aa7.43□□□□□ -1.22
PTPRF-203ENST00000372407 CELSR3Q9NYQ7 3312 aa7.42□□□□□ -1.22
PTPRF-203ENST00000372407 LINC00336Q6ZUF6 198 aa7.42□□□□□ -1.22
PTPRF-203ENST00000372407 ZNF575Q86XF7 245 aa7.41□□□□□ -1.22
PTPRF-203ENST00000372407 NOTCH1P46531 2555 aa7.4□□□□□ -1.22
PTPRF-203ENST00000372407 ATMQ13315 3056 aa7.4□□□□□ -1.22
PTPRF-203ENST00000372407 DSCR10P59022 87 aa7.4□□□□□ -1.22
PTPRF-203ENST00000372407 FREM2Q5SZK8 3169 aa7.39□□□□□ -1.23
PTPRF-203ENST00000372407 A0A087WTM6 91 aa7.39□□□□□ -1.23
PTPRF-203ENST00000372407 COL12A1Q99715 3063 aa7.39□□□□□ -1.23
PTPRF-203ENST00000372407 BOD1L1Q8NFC6 3051 aa7.39□□□□□ -1.23
PTPRF-203ENST00000372407 FLG2Q5D862 2391 aaPredicted RBP7.38□□□□□ -1.23
PTPRF-203ENST00000372407 NBEAL1Q6ZS30 2694 aa7.38□□□□□ -1.23
PTPRF-203ENST00000372407 IGLV5-48A0A075B6I7 105 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms