RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 TM2D3Q9BRN9 247 aa8.01□□□□□ -1.13
CLIP3-201ENST00000360535 NBEAL1Q6ZS30 2694 aa8.01□□□□□ -1.13
CLIP3-201ENST00000360535 PKIGQ9Y2B9 76 aa8□□□□□ -1.13
CLIP3-201ENST00000360535 PRB2P02812 416 aaPredicted RBP8□□□□□ -1.13
CLIP3-201ENST00000360535 KRTAP10-11P60412 298 aa8□□□□□ -1.13
CLIP3-201ENST00000360535 DEFB131BA0A096LNP1 70 aa7.99□□□□□ -1.13
CLIP3-201ENST00000360535 SYCNQ0VAF6 134 aa7.99□□□□□ -1.13
CLIP3-201ENST00000360535 PDE6GP18545 87 aa7.99□□□□□ -1.13
CLIP3-201ENST00000360535 TRAV7A0A075B6U4 112 aa7.99□□□□□ -1.13
CLIP3-201ENST00000360535 TRBV7-4A0A0J9YYF1 115 aa7.99□□□□□ -1.13
CLIP3-201ENST00000360535 SERTAD4-AS1Q5TG53 156 aa7.99□□□□□ -1.13
CLIP3-201ENST00000360535 BPY2O14599 106 aa7.98□□□□□ -1.13
CLIP3-201ENST00000360535 NREPQ16612 68 aa7.98□□□□□ -1.13
CLIP3-201ENST00000360535 FAM168BA1KXE4 195 aa7.97□□□□□ -1.13
CLIP3-201ENST00000360535 LINC00528Q8N1L1 170 aa7.97□□□□□ -1.13
CLIP3-201ENST00000360535 F8WEM9 126 aa7.97□□□□□ -1.13
CLIP3-201ENST00000360535 KRTAP26-1Q6PEX3 210 aa7.97□□□□□ -1.13
CLIP3-201ENST00000360535 LINC00336Q6ZUF6 198 aa7.96□□□□□ -1.14
CLIP3-201ENST00000360535 C11orf45Q8TAV5 145 aa7.96□□□□□ -1.14
CLIP3-201ENST00000360535 CXCL6P80162 114 aa7.95□□□□□ -1.14
CLIP3-201ENST00000360535 C7orf33Q8WU49 177 aa7.95□□□□□ -1.14
CLIP3-201ENST00000360535 CASC10Q5T4H9 136 aa7.95□□□□□ -1.14
CLIP3-201ENST00000360535 MRAPQ8TCY5 172 aa7.95□□□□□ -1.14
CLIP3-201ENST00000360535 H7BZZ5 65 aa7.94□□□□□ -1.14
CLIP3-201ENST00000360535 A0A0U1RQV1 116 aa7.94□□□□□ -1.14
CLIP3-201ENST00000360535 WIPF1O43516 503 aa7.94□□□□□ -1.14
CLIP3-201ENST00000360535 ANK2Q01484 3957 aa7.94□□□□□ -1.14
CLIP3-201ENST00000360535 ST20-AS1Q8NBB2 130 aa7.93□□□□□ -1.14
CLIP3-201ENST00000360535 H3BQ85 93 aa7.93□□□□□ -1.14
CLIP3-201ENST00000360535 BRK1Q8WUW1 75 aa7.92□□□□□ -1.14
CLIP3-201ENST00000360535 Q8N377 158 aa7.91□□□□□ -1.14
CLIP3-201ENST00000360535 A0A0G2JQZ4 141 aa7.91□□□□□ -1.14
CLIP3-201ENST00000360535 ETDCA0A1B0GVM5 59 aa7.91□□□□□ -1.14
CLIP3-201ENST00000360535 A0A1W2PNN7 141 aa7.91□□□□□ -1.14
CLIP3-201ENST00000360535 MPLKIPQ8TAP9 179 aa7.91□□□□□ -1.14
CLIP3-201ENST00000360535 LINC00474Q9P2X8 69 aa7.9□□□□□ -1.14
CLIP3-201ENST00000360535 SERP1Q9Y6X1 66 aa7.9□□□□□ -1.14
CLIP3-201ENST00000360535 TRBV7-6A0A0J9YX20 115 aa7.9□□□□□ -1.15
CLIP3-201ENST00000360535 UBE2BP63146 152 aa7.9□□□□□ -1.15
CLIP3-201ENST00000360535 LINC01556Q5JQF7 62 aa7.9□□□□□ -1.15
CLIP3-201ENST00000360535 FAM30AQ9NZY2 134 aa7.88□□□□□ -1.15
CLIP3-201ENST00000360535 IGKV4-1P06312 121 aa7.87□□□□□ -1.15
CLIP3-201ENST00000360535 MGAM2Q2M2H8 2515 aa7.87□□□□□ -1.15
CLIP3-201ENST00000360535 H3BNG1 76 aa7.87□□□□□ -1.15
CLIP3-201ENST00000360535 KLKP1Q107X0 134 aa7.87□□□□□ -1.15
CLIP3-201ENST00000360535 TMEM254Q8TBM7 123 aa7.87□□□□□ -1.15
CLIP3-201ENST00000360535 PRO0628Q9UI54 55 aa7.87□□□□□ -1.15
CLIP3-201ENST00000360535 FUSP35637 526 aaKnown RBP eCLIP7.87□□□□□ -1.15
CLIP3-201ENST00000360535 CSMD3Q7Z407 3707 aa7.86□□□□□ -1.15
CLIP3-201ENST00000360535 IGKV2-24A0A0C4DH68 120 aa7.86□□□□□ -1.15
CLIP3-201ENST00000360535 Q9BRP9 147 aa7.86□□□□□ -1.15
CLIP3-201ENST00000360535 KCNQ1DNQ9H478 68 aa7.86□□□□□ -1.15
CLIP3-201ENST00000360535 ERC2-IT1O76042 136 aa7.86□□□□□ -1.15
CLIP3-201ENST00000360535 DEFB116Q30KQ4 102 aa7.85□□□□□ -1.15
CLIP3-201ENST00000360535 C1orf137Q5JT78 98 aa7.85□□□□□ -1.15
CLIP3-201ENST00000360535 LINC00588Q9Y4M8 146 aa7.85□□□□□ -1.15
CLIP3-201ENST00000360535 HIGD2AQ9BW72 106 aa7.84□□□□□ -1.15
CLIP3-201ENST00000360535 Q6ZRX8 168 aa7.84□□□□□ -1.15
CLIP3-201ENST00000360535 SRRM2Q9UQ35 2752 aaKnown RBP7.84□□□□□ -1.15
CLIP3-201ENST00000360535 SMIM26A0A096LP01 95 aa7.84□□□□□ -1.16
CLIP3-201ENST00000360535 FP248Q71RG6 208 aaPredicted RBP7.84□□□□□ -1.16
CLIP3-201ENST00000360535 A0A1W2PNM2 257 aa7.83□□□□□ -1.16
CLIP3-201ENST00000360535 SMIM29Q86T20 159 aa7.83□□□□□ -1.16
CLIP3-201ENST00000360535 KRTAP24-1Q3LI83 254 aa7.83□□□□□ -1.16
CLIP3-201ENST00000360535 BCE1O60756 84 aa7.82□□□□□ -1.16
CLIP3-201ENST00000360535 TENM2Q9NT68 2774 aa7.81□□□□□ -1.16
CLIP3-201ENST00000360535 DHRS4-AS1Q9P1J3 65 aa7.81□□□□□ -1.16
CLIP3-201ENST00000360535 IGLV1-50A0A075B6I6 118 aa7.81□□□□□ -1.16
CLIP3-201ENST00000360535 DNAH10OSP0CZ25 163 aa7.81□□□□□ -1.16
CLIP3-201ENST00000360535 MRPL55Q7Z7F7 128 aaKnown RBP7.8□□□□□ -1.16
CLIP3-201ENST00000360535 STAB2Q8WWQ8 2551 aa7.8□□□□□ -1.16
CLIP3-201ENST00000360535 LRCOL1A6NCL2 159 aa7.8□□□□□ -1.16
CLIP3-201ENST00000360535 PRLHP81277 87 aa7.8□□□□□ -1.16
CLIP3-201ENST00000360535 KRTAP7-1Q8IUC3 87 aa7.8□□□□□ -1.16
CLIP3-201ENST00000360535 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.79□□□□□ -1.16
CLIP3-201ENST00000360535 IGLV5-48A0A075B6I7 105 aa7.78□□□□□ -1.16
CLIP3-201ENST00000360535 PRYO14603 147 aa7.78□□□□□ -1.16
CLIP3-201ENST00000360535 OCR1Q9BZK8 76 aa7.78□□□□□ -1.16
CLIP3-201ENST00000360535 PRR4Q16378 134 aa7.77□□□□□ -1.16
CLIP3-201ENST00000360535 K7EQZ3 153 aa7.76□□□□□ -1.17
CLIP3-201ENST00000360535 FAM229BQ4G0N7 80 aa7.76□□□□□ -1.17
CLIP3-201ENST00000360535 A0A096LNI7 61 aa7.76□□□□□ -1.17
CLIP3-201ENST00000360535 PSCAO43653 123 aa7.76□□□□□ -1.17
CLIP3-201ENST00000360535 Q8NBF4 154 aa7.76□□□□□ -1.17
CLIP3-201ENST00000360535 EPM2AB3EWF7 344 aa7.75□□□□□ -1.17
CLIP3-201ENST00000360535 NDUFC1O43677 76 aa7.75□□□□□ -1.17
CLIP3-201ENST00000360535 REG3GQ6UW15 175 aa7.75□□□□□ -1.17
CLIP3-201ENST00000360535 KRTAP4-16G5E9R7 235 aaPredicted RBP7.74□□□□□ -1.17
CLIP3-201ENST00000360535 WFDC13Q8IUB5 93 aa7.74□□□□□ -1.17
CLIP3-201ENST00000360535 LINC00476Q8WZB0 136 aa7.74□□□□□ -1.17
CLIP3-201ENST00000360535 C1orf195Q5TG92 126 aa7.74□□□□□ -1.17
CLIP3-201ENST00000360535 TLX1NBP0CAT3 122 aa7.73□□□□□ -1.17
CLIP3-201ENST00000360535 F8WDY8 70 aa7.73□□□□□ -1.17
CLIP3-201ENST00000360535 CHTF8P0CG12 524 aa7.72□□□□□ -1.17
CLIP3-201ENST00000360535 DSCR10P59022 87 aa7.72□□□□□ -1.17
CLIP3-201ENST00000360535 RPL37AP61513 92 aaKnown RBP7.72□□□□□ -1.17
CLIP3-201ENST00000360535 A0A087WSZ3 146 aa7.71□□□□□ -1.17
CLIP3-201ENST00000360535 LYSTQ99698 3801 aa7.71□□□□□ -1.17
CLIP3-201ENST00000360535 SPRR1AP35321 89 aa7.71□□□□□ -1.18
CLIP3-201ENST00000360535 SEC61GP60059 68 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms