RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 CAMK2N1Q7Z7J9 78 aa11.96□□□□□ -0.5
SMAD4-201ENST00000342988 SMR3AQ99954 134 aa11.95□□□□□ -0.5
SMAD4-201ENST00000342988 IGLV5-48A0A075B6I7 105 aa11.94□□□□□ -0.5
SMAD4-201ENST00000342988 DSCR10P59022 87 aa11.93□□□□□ -0.5
SMAD4-201ENST00000342988 LINC00588Q9Y4M8 146 aa11.91□□□□□ -0.5
SMAD4-201ENST00000342988 AVPP01185 164 aa11.91□□□□□ -0.5
SMAD4-201ENST00000342988 SMCPP49901 116 aaPredicted RBP11.91□□□□□ -0.5
SMAD4-201ENST00000342988 PRO0461Q9UI25 63 aa11.9□□□□□ -0.5
SMAD4-201ENST00000342988 HRES1P13985 223 aa11.9□□□□□ -0.5
SMAD4-201ENST00000342988 LINC00336Q6ZUF6 198 aa11.9□□□□□ -0.5
SMAD4-201ENST00000342988 C9orf92A6NGG3 77 aa11.89□□□□□ -0.51
SMAD4-201ENST00000342988 DMAC1Q96GE9 116 aa11.89□□□□□ -0.51
SMAD4-201ENST00000342988 DNAH10OSP0CZ25 163 aa11.89□□□□□ -0.51
SMAD4-201ENST00000342988 WISP2O76076 250 aa11.87□□□□□ -0.51
SMAD4-201ENST00000342988 ZNF575Q86XF7 245 aa11.87□□□□□ -0.51
SMAD4-201ENST00000342988 AKAP13Q12802 2813 aa11.84□□□□□ -0.51
SMAD4-201ENST00000342988 KCNQ1DNQ9H478 68 aa11.83□□□□□ -0.51
SMAD4-201ENST00000342988 ZNF861PO60384 105 aa11.83□□□□□ -0.52
SMAD4-201ENST00000342988 IGFL1Q6UW32 110 aa11.82□□□□□ -0.52
SMAD4-201ENST00000342988 CEP295Q9C0D2 2601 aa11.81□□□□□ -0.52
SMAD4-201ENST00000342988 H3BS24 57 aa11.81□□□□□ -0.52
SMAD4-201ENST00000342988 H7BZZ5 65 aa11.79□□□□□ -0.52
SMAD4-201ENST00000342988 PLA2G2DQ9UNK4 145 aa11.78□□□□□ -0.52
SMAD4-201ENST00000342988 CFAP46Q8IYW2 2715 aa11.78□□□□□ -0.52
SMAD4-201ENST00000342988 FAM168BA1KXE4 195 aa11.78□□□□□ -0.52
SMAD4-201ENST00000342988 HECTD1Q9ULT8 2610 aa11.76□□□□□ -0.53
SMAD4-201ENST00000342988 STAB1Q9NY15 2570 aa11.76□□□□□ -0.53
SMAD4-201ENST00000342988 WWC2-AS2Q96NR7 200 aa11.75□□□□□ -0.53
SMAD4-201ENST00000342988 IGLV1-50A0A075B6I6 118 aa11.75□□□□□ -0.53
SMAD4-201ENST00000342988 A0A1B0GU33 70 aa11.74□□□□□ -0.53
SMAD4-201ENST00000342988 C15orf56Q8N910 161 aa11.73□□□□□ -0.53
SMAD4-201ENST00000342988 C9orf163Q8N9P6 203 aa11.7□□□□□ -0.54
SMAD4-201ENST00000342988 M0R2T5 61 aa11.69□□□□□ -0.54
SMAD4-201ENST00000342988 Q8N1X5 172 aa11.69□□□□□ -0.54
SMAD4-201ENST00000342988 DMBT1Q9UGM3 2413 aaPredicted RBP11.68□□□□□ -0.54
SMAD4-201ENST00000342988 LINC00528Q8N1L1 170 aa11.68□□□□□ -0.54
SMAD4-201ENST00000342988 CENPEQ02224 2701 aa11.68□□□□□ -0.54
SMAD4-201ENST00000342988 Q75L30 129 aa11.66□□□□□ -0.54
SMAD4-201ENST00000342988 Q6ZSA8 131 aa11.66□□□□□ -0.54
SMAD4-201ENST00000342988 WIPF1O43516 503 aa11.66□□□□□ -0.54
SMAD4-201ENST00000342988 NBEAL1Q6ZS30 2694 aa11.65□□□□□ -0.54
SMAD4-201ENST00000342988 Q8NAQ8 132 aa11.65□□□□□ -0.54
SMAD4-201ENST00000342988 COL4A2P08572 1712 aa11.64□□□□□ -0.55
SMAD4-201ENST00000342988 TLX1NBP0CAT3 122 aa11.64□□□□□ -0.55
SMAD4-201ENST00000342988 MGAM2Q2M2H8 2515 aa11.63□□□□□ -0.55
SMAD4-201ENST00000342988 Q8N377 158 aa11.61□□□□□ -0.55
SMAD4-201ENST00000342988 SPINK7P58062 85 aa11.61□□□□□ -0.55
SMAD4-201ENST00000342988 PSORS1C2Q9UIG4 136 aa11.59□□□□□ -0.55
SMAD4-201ENST00000342988 CDSNQ15517 529 aa11.56□□□□□ -0.56
SMAD4-201ENST00000342988 IGLV7-43P04211 117 aa11.55□□□□□ -0.56
SMAD4-201ENST00000342988 KRTAP10-9P60411 292 aa11.55□□□□□ -0.56
SMAD4-201ENST00000342988 LITAFQ99732 161 aa11.53□□□□□ -0.56
SMAD4-201ENST00000342988 S4R3F8 94 aa11.52□□□□□ -0.56
SMAD4-201ENST00000342988 MAST4O15021 2626 aa11.52□□□□□ -0.57
SMAD4-201ENST00000342988 CENPFP49454 3210 aa11.51□□□□□ -0.57
SMAD4-201ENST00000342988 PRR26Q8N8Z3 221 aa11.49□□□□□ -0.57
SMAD4-201ENST00000342988 CSAG1Q6PB30 78 aa11.48□□□□□ -0.57
SMAD4-201ENST00000342988 TNP2Q05952 138 aa11.47□□□□□ -0.57
SMAD4-201ENST00000342988 SPRR4Q96PI1 79 aa11.47□□□□□ -0.57
SMAD4-201ENST00000342988 ATRQ13535 2644 aa11.47□□□□□ -0.57
SMAD4-201ENST00000342988 IGLV7-46A0A075B6I9 117 aa11.47□□□□□ -0.57
SMAD4-201ENST00000342988 H1FX-AS1Q4G0G2 97 aa11.44□□□□□ -0.58
SMAD4-201ENST00000342988 R4GN34 69 aa11.42□□□□□ -0.58
SMAD4-201ENST00000342988 A0A087WTM6 91 aa11.42□□□□□ -0.58
SMAD4-201ENST00000342988 LINC01558Q9Y6Z2 57 aa11.41□□□□□ -0.58
SMAD4-201ENST00000342988 PRR34Q9NV39 138 aa11.4□□□□□ -0.58
SMAD4-201ENST00000342988 PLAC4Q8WY50 150 aa11.39□□□□□ -0.59
SMAD4-201ENST00000342988 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.37□□□□□ -0.59
SMAD4-201ENST00000342988 ROMO1P60602 79 aa11.37□□□□□ -0.59
SMAD4-201ENST00000342988 KRTAP16-1A8MUX0 517 aa11.36□□□□□ -0.59
SMAD4-201ENST00000342988 OCR1Q9BZK8 76 aa11.36□□□□□ -0.59
SMAD4-201ENST00000342988 Q8N9P0 234 aaPredicted RBP11.35□□□□□ -0.59
SMAD4-201ENST00000342988 BAHCC1Q9P281 2608 aa11.35□□□□□ -0.59
SMAD4-201ENST00000342988 CNBPP62633 177 aaKnown RBP11.35□□□□□ -0.59
SMAD4-201ENST00000342988 SMR3BP02814 79 aaPredicted RBP11.34□□□□□ -0.59
SMAD4-201ENST00000342988 KMT2BQ9UMN6 2715 aaPredicted RBP11.31□□□□□ -0.6
SMAD4-201ENST00000342988 ANAPC11Q9NYG5 84 aa11.31□□□□□ -0.6
SMAD4-201ENST00000342988 NOTCH1P46531 2555 aa11.31□□□□□ -0.6
SMAD4-201ENST00000342988 STAB2Q8WWQ8 2551 aa11.27□□□□□ -0.61
SMAD4-201ENST00000342988 A0A1W2PPR1 153 aa11.27□□□□□ -0.61
SMAD4-201ENST00000342988 ASB16-AS1Q495Z4 193 aa11.24□□□□□ -0.61
SMAD4-201ENST00000342988 C19orf73Q9NVV2 129 aa11.24□□□□□ -0.61
SMAD4-201ENST00000342988 KRTAP24-1Q3LI83 254 aa11.23□□□□□ -0.61
SMAD4-201ENST00000342988 FAM229BQ4G0N7 80 aa11.23□□□□□ -0.61
SMAD4-201ENST00000342988 FLNAP21333 2647 aaKnown RBP11.23□□□□□ -0.61
SMAD4-201ENST00000342988 A0A0G2JQZ4 141 aa11.22□□□□□ -0.61
SMAD4-201ENST00000342988 A0A1W2PNN7 141 aa11.22□□□□□ -0.61
SMAD4-201ENST00000342988 RPL37P61927 97 aaKnown RBP11.22□□□□□ -0.61
SMAD4-201ENST00000342988 ZCCHC13Q8WW36 166 aaKnown RBP11.21□□□□□ -0.61
SMAD4-201ENST00000342988 A0A1W2PNM2 257 aa11.2□□□□□ -0.62
SMAD4-201ENST00000342988 ITPR3Q14573 2671 aa11.19□□□□□ -0.62
SMAD4-201ENST00000342988 LINC00612Q8N6U2 182 aa11.19□□□□□ -0.62
SMAD4-201ENST00000342988 PRAC1Q96KF2 57 aa11.15□□□□□ -0.62
SMAD4-201ENST00000342988 SEC61BP60468 96 aaKnown RBP11.15□□□□□ -0.62
SMAD4-201ENST00000342988 COL6A5A8TX70 2615 aa11.15□□□□□ -0.62
SMAD4-201ENST00000342988 CHD6Q8TD26 2715 aa11.15□□□□□ -0.63
SMAD4-201ENST00000342988 C10orf142B7Z368 130 aa11.13□□□□□ -0.63
SMAD4-201ENST00000342988 K7EIL1 84 aa11.11□□□□□ -0.63
SMAD4-201ENST00000342988 UNC79Q9P2D8 2635 aa11.09□□□□□ -0.63
SMAD4-201ENST00000342988 Q5VV11 94 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms