RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 UQCRQO14949 82 aa4.62□□□□□ -1.67
SF3B1-201ENST00000335508 CFAP47Q6ZTR5 3102 aa4.62□□□□□ -1.67
SF3B1-201ENST00000335508 LINC00575Q6W349 94 aa4.62□□□□□ -1.67
SF3B1-201ENST00000335508 ZNF575Q86XF7 245 aa4.62□□□□□ -1.67
SF3B1-201ENST00000335508 C10orf25Q5T742 122 aa4.62□□□□□ -1.67
SF3B1-201ENST00000335508 C22orf24Q9Y442 160 aa4.62□□□□□ -1.67
SF3B1-201ENST00000335508 KRTAP21-3Q3LHN1 58 aa4.61□□□□□ -1.67
SF3B1-201ENST00000335508 OTOGQ6ZRI0 2925 aa4.61□□□□□ -1.67
SF3B1-201ENST00000335508 C16orf90A8MZG2 172 aa4.61□□□□□ -1.67
SF3B1-201ENST00000335508 H0Y9J4 135 aa4.61□□□□□ -1.67
SF3B1-201ENST00000335508 LINC00336Q6ZUF6 198 aa4.61□□□□□ -1.67
SF3B1-201ENST00000335508 C1orf137Q5JT78 98 aa4.6□□□□□ -1.67
SF3B1-201ENST00000335508 LINC00167Q96N53 147 aa4.6□□□□□ -1.67
SF3B1-201ENST00000335508 VCANP13611 3396 aa4.6□□□□□ -1.67
SF3B1-201ENST00000335508 C20orf197Q8N268 126 aa4.6□□□□□ -1.67
SF3B1-201ENST00000335508 SLPIP03973 132 aa4.59□□□□□ -1.67
SF3B1-201ENST00000335508 TLX1NBP0CAT3 122 aa4.59□□□□□ -1.67
SF3B1-201ENST00000335508 LITAFQ99732 161 aa4.59□□□□□ -1.67
SF3B1-201ENST00000335508 PRR3P79522 188 aaKnown RBP4.58□□□□□ -1.68
SF3B1-201ENST00000335508 APLNQ9ULZ1 77 aa4.58□□□□□ -1.68
SF3B1-201ENST00000335508 CNBPP62633 177 aaKnown RBP4.57□□□□□ -1.68
SF3B1-201ENST00000335508 SRRM2Q9UQ35 2752 aaKnown RBP4.57□□□□□ -1.68
SF3B1-201ENST00000335508 SDIM1Q6ZPB5 146 aa4.57□□□□□ -1.68
SF3B1-201ENST00000335508 Q6ZRX8 168 aa4.56□□□□□ -1.68
SF3B1-201ENST00000335508 Q6ZRP5 223 aa4.56□□□□□ -1.68
SF3B1-201ENST00000335508 IGKV4-1P06312 121 aa4.56□□□□□ -1.68
SF3B1-201ENST00000335508 SPINK6Q6UWN8 80 aa4.55□□□□□ -1.68
SF3B1-201ENST00000335508 KCNQ1DNQ9H478 68 aa4.55□□□□□ -1.68
SF3B1-201ENST00000335508 Q8N3U1 123 aa4.55□□□□□ -1.68
SF3B1-201ENST00000335508 IGLV6-57P01721 117 aa4.55□□□□□ -1.68
SF3B1-201ENST00000335508 ELOF1P60002 83 aaKnown RBP4.55□□□□□ -1.68
SF3B1-201ENST00000335508 A0A087WTM6 91 aa4.55□□□□□ -1.68
SF3B1-201ENST00000335508 CASC2Q6XLA1 102 aa4.55□□□□□ -1.68
SF3B1-201ENST00000335508 SMCR5Q8TEV8 140 aa4.55□□□□□ -1.68
SF3B1-201ENST00000335508 FBN1P35555 2871 aaKnown RBP4.55□□□□□ -1.68
SF3B1-201ENST00000335508 RBM12B-AS1Q9P1G2 102 aa4.55□□□□□ -1.68
SF3B1-201ENST00000335508 PLA2G2DQ9UNK4 145 aa4.55□□□□□ -1.68
SF3B1-201ENST00000335508 Q6Q795 121 aa4.54□□□□□ -1.68
SF3B1-201ENST00000335508 A0A087WYN8 130 aa4.54□□□□□ -1.68
SF3B1-201ENST00000335508 RTL8CO15255 209 aa4.54□□□□□ -1.68
SF3B1-201ENST00000335508 CRYGAP11844 174 aa4.54□□□□□ -1.68
SF3B1-201ENST00000335508 C15orf56Q8N910 161 aa4.54□□□□□ -1.68
SF3B1-201ENST00000335508 TGP01266 2768 aa4.54□□□□□ -1.68
SF3B1-201ENST00000335508 LINC00528Q8N1L1 170 aa4.53□□□□□ -1.68
SF3B1-201ENST00000335508 CELSR3Q9NYQ7 3312 aa4.53□□□□□ -1.68
SF3B1-201ENST00000335508 Q9BRP9 147 aa4.53□□□□□ -1.68
SF3B1-201ENST00000335508 PDZD2O15018 2839 aa4.53□□□□□ -1.68
SF3B1-201ENST00000335508 PRLHP81277 87 aa4.53□□□□□ -1.68
SF3B1-201ENST00000335508 Q8NBF4 154 aa4.53□□□□□ -1.68
SF3B1-201ENST00000335508 A0A087WSZ3 146 aa4.52□□□□□ -1.69
SF3B1-201ENST00000335508 LINC00476Q8WZB0 136 aa4.52□□□□□ -1.69
SF3B1-201ENST00000335508 PRR15LQ9BU68 103 aa4.52□□□□□ -1.69
SF3B1-201ENST00000335508 SERP1Q9Y6X1 66 aa4.52□□□□□ -1.69
SF3B1-201ENST00000335508 DCHS1Q96JQ0 3298 aa4.52□□□□□ -1.69
SF3B1-201ENST00000335508 BCE1O60756 84 aa4.51□□□□□ -1.69
SF3B1-201ENST00000335508 COX7CP15954 63 aa4.51□□□□□ -1.69
SF3B1-201ENST00000335508 RPL37AP61513 92 aaKnown RBP4.51□□□□□ -1.69
SF3B1-201ENST00000335508 VWFP04275 2813 aa4.51□□□□□ -1.69
SF3B1-201ENST00000335508 LIMD2Q9BT23 127 aa4.51□□□□□ -1.69
SF3B1-201ENST00000335508 SSBP3-AS1Q7Z2R9 100 aa4.51□□□□□ -1.69
SF3B1-201ENST00000335508 PRO0461Q9UI25 63 aa4.5□□□□□ -1.69
SF3B1-201ENST00000335508 SPTBN5Q9NRC6 3674 aaKnown RBP4.5□□□□□ -1.69
SF3B1-201ENST00000335508 IGLV9-49A0A0B4J1Y8 123 aa4.5□□□□□ -1.69
SF3B1-201ENST00000335508 J3QL48 77 aa4.5□□□□□ -1.69
SF3B1-201ENST00000335508 IGLV1-50A0A075B6I6 118 aa4.49□□□□□ -1.69
SF3B1-201ENST00000335508 SERP2Q8N6R1 65 aa4.49□□□□□ -1.69
SF3B1-201ENST00000335508 RETNLBQ9BQ08 111 aa4.49□□□□□ -1.69
SF3B1-201ENST00000335508 PRR26Q8N8Z3 221 aa4.49□□□□□ -1.69
SF3B1-201ENST00000335508 IGLV5-37A0A075B6J1 123 aa4.49□□□□□ -1.69
SF3B1-201ENST00000335508 NDUFC1O43677 76 aa4.49□□□□□ -1.69
SF3B1-201ENST00000335508 EIF4EBP3O60516 100 aaPredicted RBP4.48□□□□□ -1.69
SF3B1-201ENST00000335508 Q6ZVQ6 151 aa4.48□□□□□ -1.69
SF3B1-201ENST00000335508 EPM2AB3EWF7 344 aa4.47□□□□□ -1.69
SF3B1-201ENST00000335508 LOC110117498A0A087WWA1 95 aa4.47□□□□□ -1.69
SF3B1-201ENST00000335508 FAM104AQ969W3 186 aa4.47□□□□□ -1.69
SF3B1-201ENST00000335508 CHTF8P0CG12 524 aa4.47□□□□□ -1.69
SF3B1-201ENST00000335508 ZNF861PO60384 105 aa4.47□□□□□ -1.69
SF3B1-201ENST00000335508 LINC00846Q9NV44 126 aa4.47□□□□□ -1.69
SF3B1-201ENST00000335508 TRBV7-4A0A0J9YYF1 115 aa4.46□□□□□ -1.69
SF3B1-201ENST00000335508 CXCL6P80162 114 aa4.46□□□□□ -1.7
SF3B1-201ENST00000335508 SMCPP49901 116 aaPredicted RBP4.45□□□□□ -1.7
SF3B1-201ENST00000335508 CIRBP-AS1Q8TBR5 109 aa4.45□□□□□ -1.7
SF3B1-201ENST00000335508 FAM218AQ96MZ4 157 aa4.45□□□□□ -1.7
SF3B1-201ENST00000335508 LOC400499M0QZD8 3231 aa4.45□□□□□ -1.7
SF3B1-201ENST00000335508 PHF5AQ7RTV0 110 aaKnown RBP4.45□□□□□ -1.7
SF3B1-201ENST00000335508 KTN1-AS1Q86SY8 53 aa4.45□□□□□ -1.7
SF3B1-201ENST00000335508 SPINT4Q6UDR6 99 aa4.45□□□□□ -1.7
SF3B1-201ENST00000335508 WFDC13Q8IUB5 93 aa4.45□□□□□ -1.7
SF3B1-201ENST00000335508 SCXQ7RTU7 201 aa4.45□□□□□ -1.7
SF3B1-201ENST00000335508 PLA2G1BP04054 148 aaKnown RBP4.44□□□□□ -1.7
SF3B1-201ENST00000335508 SPAG11AQ6PDA7 123 aa4.44□□□□□ -1.7
SF3B1-201ENST00000335508 TRBV7-7A0A0K0K1E9 115 aa4.44□□□□□ -1.7
SF3B1-201ENST00000335508 C9orf129Q5T035 196 aaKnown RBP4.44□□□□□ -1.7
SF3B1-201ENST00000335508 TRAV7A0A075B6U4 112 aa4.43□□□□□ -1.7
SF3B1-201ENST00000335508 C8orf87E5RJ46 101 aa4.43□□□□□ -1.7
SF3B1-201ENST00000335508 CASC10Q5T4H9 136 aa4.43□□□□□ -1.7
SF3B1-201ENST00000335508 LINC01600Q96MT4 127 aa4.43□□□□□ -1.7
SF3B1-201ENST00000335508 K7ERS5 55 aa4.42□□□□□ -1.7
SF3B1-201ENST00000335508 Q8N9L7 120 aa4.42□□□□□ -1.7
SF3B1-201ENST00000335508 CDIP1Q9H305 208 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms