RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 C6orf99Q4VX62 202 aa9.41□□□□□ -0.9
CCDC88C-202ENST00000334448 PLAC8Q9NZF1 115 aa9.41□□□□□ -0.9
CCDC88C-202ENST00000334448 A0A1B0GX51 115 aa9.4□□□□□ -0.9
CCDC88C-202ENST00000334448 ATXN8Q156A1 80 aa9.4□□□□□ -0.9
CCDC88C-202ENST00000334448 Q6ZSA8 131 aa9.4□□□□□ -0.9
CCDC88C-202ENST00000334448 DIRC1Q969H9 104 aa9.4□□□□□ -0.9
CCDC88C-202ENST00000334448 FUSP35637 526 aaKnown RBP eCLIP9.39□□□□□ -0.91
CCDC88C-202ENST00000334448 DYNC1H1Q14204 4646 aaKnown RBP9.38□□□□□ -0.91
CCDC88C-202ENST00000334448 A0A1B0GVY2 172 aa9.38□□□□□ -0.91
CCDC88C-202ENST00000334448 KRTAP4-16G5E9R7 235 aaPredicted RBP9.38□□□□□ -0.91
CCDC88C-202ENST00000334448 TRACP01848 142 aa9.38□□□□□ -0.91
CCDC88C-202ENST00000334448 CLEC2BQ92478 149 aa9.38□□□□□ -0.91
CCDC88C-202ENST00000334448 A0A087WYN8 130 aa9.37□□□□□ -0.91
CCDC88C-202ENST00000334448 H3BMG7 143 aa9.37□□□□□ -0.91
CCDC88C-202ENST00000334448 ELOF1P60002 83 aaKnown RBP9.37□□□□□ -0.91
CCDC88C-202ENST00000334448 FAM218AQ96MZ4 157 aa9.37□□□□□ -0.91
CCDC88C-202ENST00000334448 RYR3Q15413 4870 aa9.36□□□□□ -0.91
CCDC88C-202ENST00000334448 LINC01600Q96MT4 127 aa9.36□□□□□ -0.91
CCDC88C-202ENST00000334448 PRO0461Q9UI25 63 aa9.35□□□□□ -0.91
CCDC88C-202ENST00000334448 LRP1BQ9NZR2 4599 aa9.35□□□□□ -0.91
CCDC88C-202ENST00000334448 RPL37AP8A6NKH3 93 aa9.34□□□□□ -0.91
CCDC88C-202ENST00000334448 COX7BP24311 80 aa9.34□□□□□ -0.91
CCDC88C-202ENST00000334448 LINC00575Q6W349 94 aa9.34□□□□□ -0.91
CCDC88C-202ENST00000334448 PHF5AQ7RTV0 110 aaKnown RBP9.34□□□□□ -0.91
CCDC88C-202ENST00000334448 LINC00528Q8N1L1 170 aa9.34□□□□□ -0.91
CCDC88C-202ENST00000334448 KRTAP10-1P60331 282 aa9.33□□□□□ -0.92
CCDC88C-202ENST00000334448 F8W1H4 67 aa9.32□□□□□ -0.92
CCDC88C-202ENST00000334448 REG3GQ6UW15 175 aa9.32□□□□□ -0.92
CCDC88C-202ENST00000334448 B5MCH6 92 aa9.31□□□□□ -0.92
CCDC88C-202ENST00000334448 INAFM2P0DMQ5 153 aa9.31□□□□□ -0.92
CCDC88C-202ENST00000334448 Q6ZRX8 168 aa9.31□□□□□ -0.92
CCDC88C-202ENST00000334448 PKHD1P08F94 4074 aa9.31□□□□□ -0.92
CCDC88C-202ENST00000334448 DPH3Q96FX2 82 aa9.3□□□□□ -0.92
CCDC88C-202ENST00000334448 ETDCA0A1B0GVM5 59 aa9.29□□□□□ -0.92
CCDC88C-202ENST00000334448 C9JAW5 83 aa9.29□□□□□ -0.92
CCDC88C-202ENST00000334448 H0Y9J4 135 aa9.29□□□□□ -0.92
CCDC88C-202ENST00000334448 H3BT86 120 aa9.29□□□□□ -0.92
CCDC88C-202ENST00000334448 SNCGO76070 127 aa9.29□□□□□ -0.92
CCDC88C-202ENST00000334448 UBE2BP63146 152 aa9.29□□□□□ -0.92
CCDC88C-202ENST00000334448 KRTAP11-1Q8IUC1 163 aa9.29□□□□□ -0.92
CCDC88C-202ENST00000334448 FAM30AQ9NZY2 134 aa9.29□□□□□ -0.92
CCDC88C-202ENST00000334448 hADV29S1A0JD25 119 aa9.28□□□□□ -0.92
CCDC88C-202ENST00000334448 DNAL4O96015 105 aa9.28□□□□□ -0.92
CCDC88C-202ENST00000334448 SLC25A20O43772 301 aa9.27□□□□□ -0.93
CCDC88C-202ENST00000334448 SMCPP49901 116 aaPredicted RBP9.27□□□□□ -0.93
CCDC88C-202ENST00000334448 CIRBP-AS1Q8TBR5 109 aa9.27□□□□□ -0.93
CCDC88C-202ENST00000334448 DHRS4-AS1Q9P1J3 65 aa9.27□□□□□ -0.93
CCDC88C-202ENST00000334448 H3BQ85 93 aa9.25□□□□□ -0.93
CCDC88C-202ENST00000334448 BCE1O60756 84 aa9.25□□□□□ -0.93
CCDC88C-202ENST00000334448 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.25□□□□□ -0.93
CCDC88C-202ENST00000334448 SCXQ7RTU7 201 aa9.25□□□□□ -0.93
CCDC88C-202ENST00000334448 OCIAD2Q56VL3 154 aa9.24□□□□□ -0.93
CCDC88C-202ENST00000334448 KRTAP13-1Q8IUC0 172 aa9.24□□□□□ -0.93
CCDC88C-202ENST00000334448 ANKRD29Q8N6D5 301 aa9.24□□□□□ -0.93
CCDC88C-202ENST00000334448 Q9BRP9 147 aa9.24□□□□□ -0.93
CCDC88C-202ENST00000334448 MTURNQ8N3F0 131 aa9.23□□□□□ -0.93
CCDC88C-202ENST00000334448 ORMDL1Q9P0S3 153 aa9.23□□□□□ -0.93
CCDC88C-202ENST00000334448 APOBP04114 4563 aaKnown RBP9.22□□□□□ -0.93
CCDC88C-202ENST00000334448 GHRHP01286 108 aa9.22□□□□□ -0.93
CCDC88C-202ENST00000334448 BAALC-AS2P0C853 105 aa9.21□□□□□ -0.94
CCDC88C-202ENST00000334448 Q6ZQY7 126 aa9.21□□□□□ -0.94
CCDC88C-202ENST00000334448 FAM19A1Q7Z5A9 133 aa9.21□□□□□ -0.94
CCDC88C-202ENST00000334448 SMCR5Q8TEV8 140 aa9.21□□□□□ -0.94
CCDC88C-202ENST00000334448 PPDPFLQ8WWR9 84 aa9.2□□□□□ -0.94
CCDC88C-202ENST00000334448 PSORS1C2Q9UIG4 136 aa9.2□□□□□ -0.94
CCDC88C-202ENST00000334448 TEN1Q86WV5 123 aa9.19□□□□□ -0.94
CCDC88C-202ENST00000334448 IGLV5-48A0A075B6I7 105 aa9.18□□□□□ -0.94
CCDC88C-202ENST00000334448 TMEM256-PLSCR3K7ERE1 68 aa9.18□□□□□ -0.94
CCDC88C-202ENST00000334448 PRLHP81277 87 aa9.18□□□□□ -0.94
CCDC88C-202ENST00000334448 UBE2AP49459 152 aa9.16□□□□□ -0.94
CCDC88C-202ENST00000334448 ETDBQ3ZM63 59 aa9.16□□□□□ -0.94
CCDC88C-202ENST00000334448 ERC2-IT1O76042 136 aa9.15□□□□□ -0.94
CCDC88C-202ENST00000334448 LINC01547P58512 204 aaPredicted RBP9.15□□□□□ -0.94
CCDC88C-202ENST00000334448 OBSCN-AS1Q96MR7 158 aa9.15□□□□□ -0.94
CCDC88C-202ENST00000334448 XGP55808 180 aa9.14□□□□□ -0.95
CCDC88C-202ENST00000334448 C1orf137Q5JT78 98 aa9.13□□□□□ -0.95
CCDC88C-202ENST00000334448 ZNF861PO60384 105 aa9.12□□□□□ -0.95
CCDC88C-202ENST00000334448 IGLV7-43P04211 117 aa9.12□□□□□ -0.95
CCDC88C-202ENST00000334448 SPRR1BP22528 89 aa9.12□□□□□ -0.95
CCDC88C-202ENST00000334448 HIGD2AQ9BW72 106 aa9.12□□□□□ -0.95
CCDC88C-202ENST00000334448 Q8N377 158 aa9.11□□□□□ -0.95
CCDC88C-202ENST00000334448 JMJD7-PLA2G4BH0Y9G9 81 aa9.1□□□□□ -0.95
CCDC88C-202ENST00000334448 HAMPP81172 84 aa9.1□□□□□ -0.95
CCDC88C-202ENST00000334448 ST20-AS1Q8NBB2 130 aa9.1□□□□□ -0.95
CCDC88C-202ENST00000334448 TEX49A0A1B0GTD5 131 aa9.09□□□□□ -0.95
CCDC88C-202ENST00000334448 VPS13BQ7Z7G8 4022 aa9.07□□□□□ -0.96
CCDC88C-202ENST00000334448 NDUFV3P56181 108 aaKnown RBP9.06□□□□□ -0.96
CCDC88C-202ENST00000334448 ZNF706Q9Y5V0 76 aaPredicted RBP9.06□□□□□ -0.96
CCDC88C-202ENST00000334448 RYR1P21817 5038 aa9.05□□□□□ -0.96
CCDC88C-202ENST00000334448 LINC00483Q53H64 154 aa9.05□□□□□ -0.96
CCDC88C-202ENST00000334448 SMIM29Q86T20 159 aa9.05□□□□□ -0.96
CCDC88C-202ENST00000334448 SPRR4Q96PI1 79 aa9.05□□□□□ -0.96
CCDC88C-202ENST00000334448 CDK2AP2O75956 126 aa9.04□□□□□ -0.96
CCDC88C-202ENST00000334448 LAMTOR3Q9UHA4 124 aa9.04□□□□□ -0.96
CCDC88C-202ENST00000334448 FAT1Q14517 4588 aa9.04□□□□□ -0.96
CCDC88C-202ENST00000334448 DEFB105AQ8NG35 78 aa9.03□□□□□ -0.96
CCDC88C-202ENST00000334448 IGLV8-61A0A075B6I0 122 aa9.02□□□□□ -0.97
CCDC88C-202ENST00000334448 LOC110117498A0A087WWA1 95 aa9.02□□□□□ -0.97
CCDC88C-202ENST00000334448 J3QR89 54 aa9.02□□□□□ -0.97
CCDC88C-202ENST00000334448 K7ERU9 68 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms