RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 DEFB105AQ8NG35 78 aa14.39□□□□□ -0.11
SHMT1-201ENST00000316694 SERTAD4-AS1Q5TG53 156 aa14.38□□□□□ -0.11
SHMT1-201ENST00000316694 SNURFQ9Y675 71 aa14.37□□□□□ -0.11
SHMT1-201ENST00000316694 C11orf45Q8TAV5 145 aa14.36□□□□□ -0.11
SHMT1-201ENST00000316694 C7orf33Q8WU49 177 aa14.36□□□□□ -0.11
SHMT1-201ENST00000316694 Q8N9L7 120 aa14.35□□□□□ -0.11
SHMT1-201ENST00000316694 TM2D3Q9BRN9 247 aa14.34□□□□□ -0.11
SHMT1-201ENST00000316694 KCNQ1DNQ9H478 68 aa14.34□□□□□ -0.11
SHMT1-201ENST00000316694 FAM236DA0A1B0GTK5 79 aa14.34□□□□□ -0.11
SHMT1-201ENST00000316694 H7BZZ5 65 aa14.34□□□□□ -0.11
SHMT1-201ENST00000316694 FAM236CP0DP71 79 aa14.34□□□□□ -0.11
SHMT1-201ENST00000316694 FLNBO75369 2602 aaKnown RBP14.33□□□□□ -0.11
SHMT1-201ENST00000316694 KRTAP24-1Q3LI83 254 aa14.33□□□□□ -0.12
SHMT1-201ENST00000316694 F8WDY8 70 aa14.33□□□□□ -0.12
SHMT1-201ENST00000316694 C3orf84H3BNL1 204 aa14.32□□□□□ -0.12
SHMT1-201ENST00000316694 RMI2Q96E14 147 aa14.32□□□□□ -0.12
SHMT1-201ENST00000316694 NOTCH1P46531 2555 aa14.31□□□□□ -0.12
SHMT1-201ENST00000316694 KLKP1Q107X0 134 aa14.31□□□□□ -0.12
SHMT1-201ENST00000316694 RPL37AP8A6NKH3 93 aa14.31□□□□□ -0.12
SHMT1-201ENST00000316694 NREPQ16612 68 aa14.31□□□□□ -0.12
SHMT1-201ENST00000316694 Q8N377 158 aa14.3□□□□□ -0.12
SHMT1-201ENST00000316694 MAST4O15021 2626 aa14.29□□□□□ -0.12
SHMT1-201ENST00000316694 FAM168BA1KXE4 195 aa14.27□□□□□ -0.12
SHMT1-201ENST00000316694 DNAH10OSP0CZ25 163 aa14.27□□□□□ -0.12
SHMT1-201ENST00000316694 BPY2O14599 106 aa14.27□□□□□ -0.13
SHMT1-201ENST00000316694 F8WEM9 126 aa14.24□□□□□ -0.13
SHMT1-201ENST00000316694 IGKV4-1P06312 121 aa14.24□□□□□ -0.13
SHMT1-201ENST00000316694 CASC10Q5T4H9 136 aa14.24□□□□□ -0.13
SHMT1-201ENST00000316694 Q6ZRX8 168 aa14.23□□□□□ -0.13
SHMT1-201ENST00000316694 TLX1NBP0CAT3 122 aa14.22□□□□□ -0.13
SHMT1-201ENST00000316694 Q9BRP9 147 aa14.22□□□□□ -0.13
SHMT1-201ENST00000316694 MRAPQ8TCY5 172 aa14.21□□□□□ -0.13
SHMT1-201ENST00000316694 DHRS4-AS1Q9P1J3 65 aa14.21□□□□□ -0.13
SHMT1-201ENST00000316694 DNAH3Q8TD57 4116 aa14.21□□□□□ -0.13
SHMT1-201ENST00000316694 IGLV5-48A0A075B6I7 105 aa14.21□□□□□ -0.13
SHMT1-201ENST00000316694 C4orf26Q17RF5 130 aa14.21□□□□□ -0.13
SHMT1-201ENST00000316694 ETDCA0A1B0GVM5 59 aa14.2□□□□□ -0.14
SHMT1-201ENST00000316694 C5orf47Q569G3 176 aa14.2□□□□□ -0.14
SHMT1-201ENST00000316694 LINC00588Q9Y4M8 146 aa14.2□□□□□ -0.14
SHMT1-201ENST00000316694 Q5XG85 94 aa14.19□□□□□ -0.14
SHMT1-201ENST00000316694 IGLV1-50A0A075B6I6 118 aa14.19□□□□□ -0.14
SHMT1-201ENST00000316694 PRB2P02812 416 aaPredicted RBP14.19□□□□□ -0.14
SHMT1-201ENST00000316694 ST20-AS1Q8NBB2 130 aa14.18□□□□□ -0.14
SHMT1-201ENST00000316694 PLA2G2DQ9UNK4 145 aa14.18□□□□□ -0.14
SHMT1-201ENST00000316694 FUSP35637 526 aaKnown RBP eCLIP14.18□□□□□ -0.14
SHMT1-201ENST00000316694 SERP1Q9Y6X1 66 aa14.18□□□□□ -0.14
SHMT1-201ENST00000316694 KRTAP4-16G5E9R7 235 aaPredicted RBP14.17□□□□□ -0.14
SHMT1-201ENST00000316694 PRYO14603 147 aa14.17□□□□□ -0.14
SHMT1-201ENST00000316694 TMEM254Q8TBM7 123 aa14.16□□□□□ -0.14
SHMT1-201ENST00000316694 KRTAP7-1Q8IUC3 87 aa14.15□□□□□ -0.14
SHMT1-201ENST00000316694 NBEAL1Q6ZS30 2694 aa14.14□□□□□ -0.15
SHMT1-201ENST00000316694 BAHCC1Q9P281 2608 aa14.14□□□□□ -0.15
SHMT1-201ENST00000316694 A0A1W2PNM2 257 aa14.14□□□□□ -0.15
SHMT1-201ENST00000316694 C1orf137Q5JT78 98 aa14.14□□□□□ -0.15
SHMT1-201ENST00000316694 IGLV5-37A0A075B6J1 123 aa14.13□□□□□ -0.15
SHMT1-201ENST00000316694 HRCT1Q6UXD1 115 aa14.13□□□□□ -0.15
SHMT1-201ENST00000316694 COL6A5A8TX70 2615 aa14.13□□□□□ -0.15
SHMT1-201ENST00000316694 NDUFC1O43677 76 aa14.13□□□□□ -0.15
SHMT1-201ENST00000316694 SPRR1AP35321 89 aa14.13□□□□□ -0.15
SHMT1-201ENST00000316694 ERC2-IT1O76042 136 aa14.11□□□□□ -0.15
SHMT1-201ENST00000316694 MRPL55Q7Z7F7 128 aaKnown RBP14.11□□□□□ -0.15
SHMT1-201ENST00000316694 OCR1Q9BZK8 76 aa14.1□□□□□ -0.15
SHMT1-201ENST00000316694 UBE2BP63146 152 aa14.1□□□□□ -0.15
SHMT1-201ENST00000316694 EPM2AB3EWF7 344 aa14.09□□□□□ -0.15
SHMT1-201ENST00000316694 TNP2Q05952 138 aa14.09□□□□□ -0.15
SHMT1-201ENST00000316694 Q8NBF4 154 aa14.07□□□□□ -0.16
SHMT1-201ENST00000316694 A0A1B0GW54 56 aa14.04□□□□□ -0.16
SHMT1-201ENST00000316694 SMIM29Q86T20 159 aa14.04□□□□□ -0.16
SHMT1-201ENST00000316694 HUWE1Q7Z6Z7 4374 aaKnown RBP14.04□□□□□ -0.16
SHMT1-201ENST00000316694 DNAH1Q9P2D7 4330 aa14.04□□□□□ -0.16
SHMT1-201ENST00000316694 REG3GQ6UW15 175 aa14.02□□□□□ -0.16
SHMT1-201ENST00000316694 FAM30AQ9NZY2 134 aa14.02□□□□□ -0.17
SHMT1-201ENST00000316694 A0A0U1RQV1 116 aa14.01□□□□□ -0.17
SHMT1-201ENST00000316694 HIGD2AQ9BW72 106 aa14□□□□□ -0.17
SHMT1-201ENST00000316694 SPRR4Q96PI1 79 aa14□□□□□ -0.17
SHMT1-201ENST00000316694 ATP5EP56381 51 aaPredicted RBP13.99□□□□□ -0.17
SHMT1-201ENST00000316694 LYSTQ99698 3801 aa13.98□□□□□ -0.17
SHMT1-201ENST00000316694 A0A0G2JQZ4 141 aa13.97□□□□□ -0.17
SHMT1-201ENST00000316694 A0A1W2PNN7 141 aa13.97□□□□□ -0.17
SHMT1-201ENST00000316694 SMIM26A0A096LP01 95 aa13.96□□□□□ -0.18
SHMT1-201ENST00000316694 IGKV2-24A0A0C4DH68 120 aa13.96□□□□□ -0.18
SHMT1-201ENST00000316694 K7EIL1 84 aa13.96□□□□□ -0.18
SHMT1-201ENST00000316694 DSCR10P59022 87 aa13.96□□□□□ -0.18
SHMT1-201ENST00000316694 LINC00476Q8WZB0 136 aa13.95□□□□□ -0.18
SHMT1-201ENST00000316694 FP248Q71RG6 208 aaPredicted RBP13.95□□□□□ -0.18
SHMT1-201ENST00000316694 K7EQZ3 153 aa13.94□□□□□ -0.18
SHMT1-201ENST00000316694 PRLHP81277 87 aa13.92□□□□□ -0.18
SHMT1-201ENST00000316694 A0A096LNI7 61 aa13.92□□□□□ -0.18
SHMT1-201ENST00000316694 LINC00474Q9P2X8 69 aa13.92□□□□□ -0.18
SHMT1-201ENST00000316694 MGAM2Q2M2H8 2515 aa13.91□□□□□ -0.18
SHMT1-201ENST00000316694 DNAH10Q8IVF4 4471 aa13.9□□□□□ -0.18
SHMT1-201ENST00000316694 COL7A1Q02388 2944 aa13.88□□□□□ -0.19
SHMT1-201ENST00000316694 IGFL1Q6UW32 110 aa13.88□□□□□ -0.19
SHMT1-201ENST00000316694 KRTAP1-5Q9BYS1 174 aa13.88□□□□□ -0.19
SHMT1-201ENST00000316694 DEFB116Q30KQ4 102 aa13.87□□□□□ -0.19
SHMT1-201ENST00000316694 C16orf90A8MZG2 172 aa13.86□□□□□ -0.19
SHMT1-201ENST00000316694 PSCAO43653 123 aa13.86□□□□□ -0.19
SHMT1-201ENST00000316694 STAB2Q8WWQ8 2551 aa13.85□□□□□ -0.19
SHMT1-201ENST00000316694 FAM229BQ4G0N7 80 aa13.84□□□□□ -0.19
SHMT1-201ENST00000316694 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms