RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 LOC107984156A0A0G2JMH3 177 aa7.16□□□□□ -1.26
CD44-203ENST00000278386 DPM2O94777 84 aa7.16□□□□□ -1.26
CD44-203ENST00000278386 NMUP48645 174 aa7.16□□□□□ -1.26
CD44-203ENST00000278386 SEC61BP60468 96 aaKnown RBP7.16□□□□□ -1.26
CD44-203ENST00000278386 NPC2P61916 151 aa7.16□□□□□ -1.26
CD44-203ENST00000278386 RPS29P62273 56 aaKnown RBP7.16□□□□□ -1.26
CD44-203ENST00000278386 JOSD1Q15040 202 aaPredicted RBP7.16□□□□□ -1.26
CD44-203ENST00000278386 SSBP3-AS1Q7Z2R9 100 aa7.16□□□□□ -1.26
CD44-203ENST00000278386 ARL17AQ8IVW1 177 aa7.16□□□□□ -1.26
CD44-203ENST00000278386 Q8N377 158 aa7.16□□□□□ -1.26
CD44-203ENST00000278386 IGKCP01834 107 aa7.15□□□□□ -1.26
CD44-203ENST00000278386 HSPB8Q9UJY1 196 aa7.15□□□□□ -1.26
CD44-203ENST00000278386 SLC25A20O43772 301 aa7.14□□□□□ -1.27
CD44-203ENST00000278386 NDUFC2O95298 119 aa7.14□□□□□ -1.27
CD44-203ENST00000278386 IGLV6-57P01721 117 aa7.14□□□□□ -1.27
CD44-203ENST00000278386 LINC01547P58512 204 aaPredicted RBP7.13□□□□□ -1.27
CD44-203ENST00000278386 ZNF73O43830 326 aaPredicted RBP7.12□□□□□ -1.27
CD44-203ENST00000278386 KRTAP9-6A0A140TA67 174 aa7.11□□□□□ -1.27
CD44-203ENST00000278386 SOSTDC1Q6X4U4 206 aa7.11□□□□□ -1.27
CD44-203ENST00000278386 A0A0J9YXY3 114 aa7.1□□□□□ -1.27
CD44-203ENST00000278386 HINT1P49773 126 aaPredicted RBP7.1□□□□□ -1.27
CD44-203ENST00000278386 ST20-AS1Q8NBB2 130 aa7.1□□□□□ -1.27
CD44-203ENST00000278386 KRTAP4-1Q9BYQ7 146 aa7.1□□□□□ -1.27
CD44-203ENST00000278386 SYS1-DBNDD2H3BUS1 97 aa7.09□□□□□ -1.27
CD44-203ENST00000278386 CBY1Q9Y3M2 126 aa7.09□□□□□ -1.27
CD44-203ENST00000278386 EIF4EBP3O60516 100 aaPredicted RBP7.08□□□□□ -1.28
CD44-203ENST00000278386 COA6Q5JTJ3 125 aaKnown RBP7.08□□□□□ -1.28
CD44-203ENST00000278386 ADAMTSL4-AS1Q5T5F5 129 aa7.08□□□□□ -1.28
CD44-203ENST00000278386 XP32Q5T750 250 aa7.08□□□□□ -1.28
CD44-203ENST00000278386 E9PLD3 99 aa7.07□□□□□ -1.28
CD44-203ENST00000278386 LINC01545Q5VT33 79 aa7.07□□□□□ -1.28
CD44-203ENST00000278386 OR13C6PQ8NH95 151 aa7.07□□□□□ -1.28
CD44-203ENST00000278386 C3orf79P0CE67 100 aa7.06□□□□□ -1.28
CD44-203ENST00000278386 HRCT1Q6UXD1 115 aa7.06□□□□□ -1.28
CD44-203ENST00000278386 LIMD2Q9BT23 127 aa7.06□□□□□ -1.28
CD44-203ENST00000278386 SPANXCQ9NY87 97 aa7.06□□□□□ -1.28
CD44-203ENST00000278386 C5orf52A6NGY3 159 aa7.05□□□□□ -1.28
CD44-203ENST00000278386 SLC25A34Q6PIV7 304 aa7.05□□□□□ -1.28
CD44-203ENST00000278386 PET117Q6UWS5 81 aa7.04□□□□□ -1.28
CD44-203ENST00000278386 LINC00308Q8TCZ7 52 aa7.04□□□□□ -1.28
CD44-203ENST00000278386 DHRS4-AS1Q9P1J3 65 aa7.04□□□□□ -1.28
CD44-203ENST00000278386 KRTDAPP60985 99 aa7.02□□□□□ -1.29
CD44-203ENST00000278386 LITAFQ99732 161 aa7.02□□□□□ -1.29
CD44-203ENST00000278386 TTTY13Q9BZ97 58 aa7.02□□□□□ -1.29
CD44-203ENST00000278386 LAMTOR3Q9UHA4 124 aa7.02□□□□□ -1.29
CD44-203ENST00000278386 C9orf92A6NGG3 77 aa7.01□□□□□ -1.29
CD44-203ENST00000278386 ZNF815PA8K554 130 aa7.01□□□□□ -1.29
CD44-203ENST00000278386 TIMM17BO60830 172 aa7.01□□□□□ -1.29
CD44-203ENST00000278386 SPRR1BP22528 89 aa7.01□□□□□ -1.29
CD44-203ENST00000278386 SPANXDQ9BXN6 97 aa7.01□□□□□ -1.29
CD44-203ENST00000278386 COX7BP24311 80 aa7□□□□□ -1.29
CD44-203ENST00000278386 ELOF1P60002 83 aaKnown RBP6.99□□□□□ -1.29
CD44-203ENST00000278386 Q1RN00 199 aa6.99□□□□□ -1.29
CD44-203ENST00000278386 C6orf99Q4VX62 202 aa6.99□□□□□ -1.29
CD44-203ENST00000278386 S100A1P23297 94 aa6.98□□□□□ -1.29
CD44-203ENST00000278386 TAL2Q16559 108 aa6.98□□□□□ -1.29
CD44-203ENST00000278386 ANKRD39Q53RE8 183 aa6.98□□□□□ -1.29
CD44-203ENST00000278386 PCOTHQ58A44 107 aa6.98□□□□□ -1.29
CD44-203ENST00000278386 ATOH7Q8N100 152 aa6.98□□□□□ -1.29
CD44-203ENST00000278386 DEFB105AQ8NG35 78 aa6.98□□□□□ -1.29
CD44-203ENST00000278386 LINC00518Q8N0U6 118 aa6.97□□□□□ -1.29
CD44-203ENST00000278386 IGLV8-61A0A075B6I0 122 aa6.96□□□□□ -1.3
CD44-203ENST00000278386 HIST3H2BBQ8N257 126 aa6.96□□□□□ -1.3
CD44-203ENST00000278386 H7C2G1 150 aa6.95□□□□□ -1.3
CD44-203ENST00000278386 LCE2DQ5TA82 110 aaPredicted RBP6.95□□□□□ -1.3
CD44-203ENST00000278386 SCGB1D4Q6XE38 83 aa6.95□□□□□ -1.3
CD44-203ENST00000278386 PRO1933Q9H354 126 aa6.95□□□□□ -1.3
CD44-203ENST00000278386 TEX49A0A1B0GTD5 131 aa6.94□□□□□ -1.3
CD44-203ENST00000278386 CD164Q04900 197 aa6.94□□□□□ -1.3
CD44-203ENST00000278386 HIST1H2BLQ99880 126 aa6.94□□□□□ -1.3
CD44-203ENST00000278386 A0A1B0GWB2 263 aa6.92□□□□□ -1.3
CD44-203ENST00000278386 C20orf202A1L168 122 aa6.92□□□□□ -1.3
CD44-203ENST00000278386 LCE2CQ5TA81 110 aa6.92□□□□□ -1.3
CD44-203ENST00000278386 PCP2Q8IVA1 136 aa6.92□□□□□ -1.3
CD44-203ENST00000278386 COPS9Q8WXC6 57 aa6.92□□□□□ -1.3
CD44-203ENST00000278386 TRBV7-6A0A0J9YX20 115 aa6.91□□□□□ -1.3
CD44-203ENST00000278386 A6NDN8 102 aa6.91□□□□□ -1.3
CD44-203ENST00000278386 AKR1D1P51857 326 aa6.9□□□□□ -1.3
CD44-203ENST00000278386 MT1HP80294 61 aa6.89□□□□□ -1.31
CD44-203ENST00000278386 KRTAP19-2Q3LHN2 52 aa6.89□□□□□ -1.31
CD44-203ENST00000278386 SMIM29Q86T20 159 aa6.89□□□□□ -1.31
CD44-203ENST00000278386 A0A0G2JQZ4 141 aa6.88□□□□□ -1.31
CD44-203ENST00000278386 CFC1BP0CG36 223 aa6.88□□□□□ -1.31
CD44-203ENST00000278386 IFITM1P13164 125 aa6.88□□□□□ -1.31
CD44-203ENST00000278386 SNRPEP62304 92 aaKnown RBP6.88□□□□□ -1.31
CD44-203ENST00000278386 IGLV5-48A0A075B6I7 105 aa6.87□□□□□ -1.31
CD44-203ENST00000278386 S100A2P29034 98 aa6.87□□□□□ -1.31
CD44-203ENST00000278386 C1orf195Q5TG92 126 aa6.87□□□□□ -1.31
CD44-203ENST00000278386 Q5XG85 94 aa6.87□□□□□ -1.31
CD44-203ENST00000278386 NHP2Q9NX24 153 aaKnown RBP6.87□□□□□ -1.31
CD44-203ENST00000278386 Q6ZVH6 145 aa6.86□□□□□ -1.31
CD44-203ENST00000278386 MUSTN1Q8IVN3 82 aa6.86□□□□□ -1.31
CD44-203ENST00000278386 CRCT1Q9UGL9 99 aa6.86□□□□□ -1.31
CD44-203ENST00000278386 A4D1N5 150 aa6.85□□□□□ -1.31
CD44-203ENST00000278386 S100A6P06703 90 aa6.85□□□□□ -1.31
CD44-203ENST00000278386 TRAV13-2A0A0B4J235 113 aa6.84□□□□□ -1.31
CD44-203ENST00000278386 F8WEM9 126 aa6.84□□□□□ -1.31
CD44-203ENST00000278386 RPL37P61927 97 aaKnown RBP6.84□□□□□ -1.31
CD44-203ENST00000278386 TCL1BO95988 128 aa6.83□□□□□ -1.32
CD44-203ENST00000278386 COX6B2Q6YFQ2 88 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms