RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 MUC17Q685J3 4493 aa8.32□□□□□ -1.08
HMGN3-201ENST00000275036 Q9BRP9 147 aa8.32□□□□□ -1.08
HMGN3-201ENST00000275036 PPDPFQ9H3Y8 114 aa8.32□□□□□ -1.08
HMGN3-201ENST00000275036 ZNF706Q9Y5V0 76 aaPredicted RBP8.32□□□□□ -1.08
HMGN3-201ENST00000275036 KRTDAPP60985 99 aa8.31□□□□□ -1.08
HMGN3-201ENST00000275036 ZNF815PA8K554 130 aa8.3□□□□□ -1.08
HMGN3-201ENST00000275036 S100A12P80511 92 aa8.3□□□□□ -1.08
HMGN3-201ENST00000275036 S100A7L2Q5SY68 101 aa8.3□□□□□ -1.08
HMGN3-201ENST00000275036 LINC00308Q8TCZ7 52 aa8.3□□□□□ -1.08
HMGN3-201ENST00000275036 TRAV23DV6A0A075B6W5 121 aa8.29□□□□□ -1.08
HMGN3-201ENST00000275036 LOC100996750A0A140TA64 210 aa8.29□□□□□ -1.08
HMGN3-201ENST00000275036 TIMM17BO60830 172 aa8.29□□□□□ -1.08
HMGN3-201ENST00000275036 LINC00483Q53H64 154 aa8.29□□□□□ -1.08
HMGN3-201ENST00000275036 Q6ZRX8 168 aa8.29□□□□□ -1.08
HMGN3-201ENST00000275036 KRTAP4-6Q9BYQ5 205 aa8.29□□□□□ -1.08
HMGN3-201ENST00000275036 GAGE2AQ6NT46 116 aa8.28□□□□□ -1.08
HMGN3-201ENST00000275036 ANKRD39Q53RE8 183 aa8.27□□□□□ -1.09
HMGN3-201ENST00000275036 SPANXCQ9NY87 97 aa8.27□□□□□ -1.09
HMGN3-201ENST00000275036 ZNF73O43830 326 aaPredicted RBP8.26□□□□□ -1.09
HMGN3-201ENST00000275036 CTAG1AP78358 180 aa8.26□□□□□ -1.09
HMGN3-201ENST00000275036 ATOH7Q8N100 152 aa8.26□□□□□ -1.09
HMGN3-201ENST00000275036 Q8NBF4 154 aa8.26□□□□□ -1.09
HMGN3-201ENST00000275036 LORP23490 312 aaPredicted RBP8.25□□□□□ -1.09
HMGN3-201ENST00000275036 SPAG11AQ6PDA7 123 aa8.24□□□□□ -1.09
HMGN3-201ENST00000275036 FAT4Q6V0I7 4981 aa8.23□□□□□ -1.09
HMGN3-201ENST00000275036 C20orf202A1L168 122 aa8.23□□□□□ -1.09
HMGN3-201ENST00000275036 IGLV9-49A0A0B4J1Y8 123 aa8.22□□□□□ -1.09
HMGN3-201ENST00000275036 MOBPQ13875 183 aa8.22□□□□□ -1.09
HMGN3-201ENST00000275036 JOSD1Q15040 202 aaPredicted RBP8.22□□□□□ -1.09
HMGN3-201ENST00000275036 ST20-AS1Q8NBB2 130 aa8.22□□□□□ -1.09
HMGN3-201ENST00000275036 OR13C6PQ8NH95 151 aa8.22□□□□□ -1.09
HMGN3-201ENST00000275036 IGLV7-46A0A075B6I9 117 aa8.21□□□□□ -1.1
HMGN3-201ENST00000275036 PCP2Q8IVA1 136 aa8.21□□□□□ -1.1
HMGN3-201ENST00000275036 SPANXDQ9BXN6 97 aa8.21□□□□□ -1.1
HMGN3-201ENST00000275036 TPRXLQ17RH7 258 aa8.2□□□□□ -1.1
HMGN3-201ENST00000275036 C4orf48Q5BLP8 95 aa8.2□□□□□ -1.1
HMGN3-201ENST00000275036 SCGB1D4Q6XE38 83 aa8.2□□□□□ -1.1
HMGN3-201ENST00000275036 HIST3H2BBQ8N257 126 aa8.2□□□□□ -1.1
HMGN3-201ENST00000275036 HIST1H2BLQ99880 126 aa8.18□□□□□ -1.1
HMGN3-201ENST00000275036 CBY1Q9Y3M2 126 aa8.18□□□□□ -1.1
HMGN3-201ENST00000275036 SPINK1P00995 79 aa8.17□□□□□ -1.1
HMGN3-201ENST00000275036 S100A1P23297 94 aa8.17□□□□□ -1.1
HMGN3-201ENST00000275036 HINT1P49773 126 aaPredicted RBP8.17□□□□□ -1.1
HMGN3-201ENST00000275036 SSBP3-AS1Q7Z2R9 100 aa8.17□□□□□ -1.1
HMGN3-201ENST00000275036 LINC00518Q8N0U6 118 aa8.17□□□□□ -1.1
HMGN3-201ENST00000275036 ELOF1P60002 83 aaKnown RBP8.15□□□□□ -1.1
HMGN3-201ENST00000275036 C6orf99Q4VX62 202 aa8.15□□□□□ -1.1
HMGN3-201ENST00000275036 MUSTN1Q8IVN3 82 aa8.15□□□□□ -1.1
HMGN3-201ENST00000275036 C5orf52A6NGY3 159 aa8.14□□□□□ -1.11
HMGN3-201ENST00000275036 IFITM1P13164 125 aa8.14□□□□□ -1.11
HMGN3-201ENST00000275036 AKR1D1P51857 326 aa8.14□□□□□ -1.11
HMGN3-201ENST00000275036 FP248Q71RG6 208 aaPredicted RBP8.14□□□□□ -1.11
HMGN3-201ENST00000275036 CDIP1Q9H305 208 aa8.14□□□□□ -1.11
HMGN3-201ENST00000275036 DHRS4-AS1Q9P1J3 65 aa8.14□□□□□ -1.11
HMGN3-201ENST00000275036 SPRR1BP22528 89 aa8.13□□□□□ -1.11
HMGN3-201ENST00000275036 COX7BP24311 80 aa8.13□□□□□ -1.11
HMGN3-201ENST00000275036 S100A2P29034 98 aa8.13□□□□□ -1.11
HMGN3-201ENST00000275036 C9orf153Q5TBE3 101 aa8.13□□□□□ -1.11
HMGN3-201ENST00000275036 Q6ZVH6 145 aa8.13□□□□□ -1.11
HMGN3-201ENST00000275036 SNRPEP62304 92 aaKnown RBP8.12□□□□□ -1.11
HMGN3-201ENST00000275036 Q8N377 158 aa8.12□□□□□ -1.11
HMGN3-201ENST00000275036 RPS29P62273 56 aaKnown RBP8.11□□□□□ -1.11
HMGN3-201ENST00000275036 COPS9Q8WXC6 57 aa8.11□□□□□ -1.11
HMGN3-201ENST00000275036 A6NDN8 102 aa8.1□□□□□ -1.11
HMGN3-201ENST00000275036 KRTAP13-3Q3SY46 172 aa8.1□□□□□ -1.11
HMGN3-201ENST00000275036 TRBV7-6A0A0J9YX20 115 aa8.09□□□□□ -1.11
HMGN3-201ENST00000275036 S100A6P06703 90 aa8.09□□□□□ -1.11
HMGN3-201ENST00000275036 A0A1B0GWB2 263 aa8.06□□□□□ -1.12
HMGN3-201ENST00000275036 SLC25A20O43772 301 aa8.06□□□□□ -1.12
HMGN3-201ENST00000275036 LINC01547P58512 204 aaPredicted RBP8.06□□□□□ -1.12
HMGN3-201ENST00000275036 DEFB105AQ8NG35 78 aa8.06□□□□□ -1.12
HMGN3-201ENST00000275036 SMIM11BQ8TCY0 68 aa8.06□□□□□ -1.12
HMGN3-201ENST00000275036 TRAV13-2A0A0B4J235 113 aa8.05□□□□□ -1.12
HMGN3-201ENST00000275036 A0A0U1RQV1 116 aa8.05□□□□□ -1.12
HMGN3-201ENST00000275036 HSBP1L1C9JCN9 74 aa8.05□□□□□ -1.12
HMGN3-201ENST00000275036 Q1RN00 199 aa8.05□□□□□ -1.12
HMGN3-201ENST00000275036 SLC25A34Q6PIV7 304 aa8.05□□□□□ -1.12
HMGN3-201ENST00000275036 LAMTOR3Q9UHA4 124 aa8.05□□□□□ -1.12
HMGN3-201ENST00000275036 TAL2Q16559 108 aa8.04□□□□□ -1.12
HMGN3-201ENST00000275036 SMIM29Q86T20 159 aa8.04□□□□□ -1.12
HMGN3-201ENST00000275036 TEX49A0A1B0GTD5 131 aa8.03□□□□□ -1.12
HMGN3-201ENST00000275036 HRCT1Q6UXD1 115 aa8.03□□□□□ -1.12
HMGN3-201ENST00000275036 IGLV5-48A0A075B6I7 105 aa8.02□□□□□ -1.13
HMGN3-201ENST00000275036 A4D1N5 150 aa8.02□□□□□ -1.13
HMGN3-201ENST00000275036 SCGB1D1O95968 90 aa8.02□□□□□ -1.13
HMGN3-201ENST00000275036 KRTAP4-1Q9BYQ7 146 aa8.01□□□□□ -1.13
HMGN3-201ENST00000275036 ASB16-AS1Q495Z4 193 aa7.99□□□□□ -1.13
HMGN3-201ENST00000275036 A0A0G2JQZ4 141 aa7.98□□□□□ -1.13
HMGN3-201ENST00000275036 COX8AP10176 69 aa7.98□□□□□ -1.13
HMGN3-201ENST00000275036 PRO1933Q9H354 126 aa7.98□□□□□ -1.13
HMGN3-201ENST00000275036 C12orf57Q99622 126 aa7.97□□□□□ -1.13
HMGN3-201ENST00000275036 LIMD2Q9BT23 127 aa7.97□□□□□ -1.13
HMGN3-201ENST00000275036 CD164Q04900 197 aa7.96□□□□□ -1.14
HMGN3-201ENST00000275036 LINC00575Q6W349 94 aa7.96□□□□□ -1.14
HMGN3-201ENST00000275036 NHP2Q9NX24 153 aaKnown RBP7.96□□□□□ -1.14
HMGN3-201ENST00000275036 XP32Q5T750 250 aa7.95□□□□□ -1.14
HMGN3-201ENST00000275036 HIST1H4GQ99525 98 aa7.95□□□□□ -1.14
HMGN3-201ENST00000275036 H7C2G1 150 aa7.94□□□□□ -1.14
HMGN3-201ENST00000275036 DLEU1O43261 78 aa7.94□□□□□ -1.14
HMGN3-201ENST00000275036 C14orf144Q96I85 54 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms