RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 COX7BP24311 80 aa11.06□□□□□ -0.64
CTCF-201ENST00000264010 UBE2BP63146 152 aa11.06□□□□□ -0.64
CTCF-201ENST00000264010 NBEAL2Q6ZNJ1 2754 aa11.06□□□□□ -0.64
CTCF-201ENST00000264010 DEFB116Q30KQ4 102 aa11.05□□□□□ -0.64
CTCF-201ENST00000264010 A0A096LNI7 61 aa11.05□□□□□ -0.64
CTCF-201ENST00000264010 C10orf25Q5T742 122 aa11.04□□□□□ -0.64
CTCF-201ENST00000264010 UBE2DNLQ8IWF7 75 aa11.04□□□□□ -0.64
CTCF-201ENST00000264010 TENM4Q6N022 2769 aa11.04□□□□□ -0.64
CTCF-201ENST00000264010 EGFEM1PQ0D2K5 195 aa11.03□□□□□ -0.64
CTCF-201ENST00000264010 SYCNQ0VAF6 134 aa11.03□□□□□ -0.64
CTCF-201ENST00000264010 KRTAP10-11P60412 298 aa11.02□□□□□ -0.65
CTCF-201ENST00000264010 PRR34Q9NV39 138 aa11.02□□□□□ -0.65
CTCF-201ENST00000264010 OXTP01178 125 aa11.02□□□□□ -0.65
CTCF-201ENST00000264010 Q5XG85 94 aa11.01□□□□□ -0.65
CTCF-201ENST00000264010 LINC00208Q96KT6 92 aa11.01□□□□□ -0.65
CTCF-201ENST00000264010 H7BZZ5 65 aa11□□□□□ -0.65
CTCF-201ENST00000264010 TEP1Q99973 2627 aaKnown RBP11□□□□□ -0.65
CTCF-201ENST00000264010 PDZD2O15018 2839 aa10.99□□□□□ -0.65
CTCF-201ENST00000264010 PSCAO43653 123 aa10.99□□□□□ -0.65
CTCF-201ENST00000264010 ETDCA0A1B0GVM5 59 aa10.99□□□□□ -0.65
CTCF-201ENST00000264010 M0R378 163 aa10.99□□□□□ -0.65
CTCF-201ENST00000264010 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.99□□□□□ -0.65
CTCF-201ENST00000264010 TRBV10-3A0A0K0K1G6 114 aa10.98□□□□□ -0.65
CTCF-201ENST00000264010 NSD1Q96L73 2696 aaPredicted RBP10.98□□□□□ -0.65
CTCF-201ENST00000264010 C6orf48Q9UBA6 75 aa10.98□□□□□ -0.65
CTCF-201ENST00000264010 A8MUN3 132 aa10.97□□□□□ -0.65
CTCF-201ENST00000264010 LINC01556Q5JQF7 62 aa10.97□□□□□ -0.65
CTCF-201ENST00000264010 ZNF73O43830 326 aaPredicted RBP10.96□□□□□ -0.65
CTCF-201ENST00000264010 CDK2AP2O75956 126 aa10.96□□□□□ -0.65
CTCF-201ENST00000264010 UBE2AP49459 152 aa10.96□□□□□ -0.65
CTCF-201ENST00000264010 LINC00575Q6W349 94 aa10.96□□□□□ -0.65
CTCF-201ENST00000264010 GVQW2A0A096LPI5 108 aaPredicted RBP10.96□□□□□ -0.66
CTCF-201ENST00000264010 H0Y9J4 135 aa10.96□□□□□ -0.66
CTCF-201ENST00000264010 Q6ZRU5 148 aa10.95□□□□□ -0.66
CTCF-201ENST00000264010 HIVEP1P15822 2718 aa10.93□□□□□ -0.66
CTCF-201ENST00000264010 KMT2BQ9UMN6 2715 aaPredicted RBP10.91□□□□□ -0.66
CTCF-201ENST00000264010 MAST4O15021 2626 aa10.9□□□□□ -0.66
CTCF-201ENST00000264010 IGKV4-1P06312 121 aa10.9□□□□□ -0.66
CTCF-201ENST00000264010 SMIM29Q86T20 159 aa10.89□□□□□ -0.67
CTCF-201ENST00000264010 PCOTHQ58A44 107 aa10.87□□□□□ -0.67
CTCF-201ENST00000264010 IGLV6-57P01721 117 aa10.86□□□□□ -0.67
CTCF-201ENST00000264010 CD164Q04900 197 aa10.84□□□□□ -0.67
CTCF-201ENST00000264010 SERTAD4-AS1Q5TG53 156 aa10.84□□□□□ -0.67
CTCF-201ENST00000264010 FP248Q71RG6 208 aaPredicted RBP10.84□□□□□ -0.67
CTCF-201ENST00000264010 HCG22E2RYF7 251 aa10.83□□□□□ -0.68
CTCF-201ENST00000264010 DNAH10OSP0CZ25 163 aa10.83□□□□□ -0.68
CTCF-201ENST00000264010 MDFIQ99750 246 aa10.82□□□□□ -0.68
CTCF-201ENST00000264010 NDUFB1O75438 58 aa10.82□□□□□ -0.68
CTCF-201ENST00000264010 KLKP1Q107X0 134 aa10.82□□□□□ -0.68
CTCF-201ENST00000264010 C15orf56Q8N910 161 aa10.81□□□□□ -0.68
CTCF-201ENST00000264010 VPREB1P12018 145 aa10.81□□□□□ -0.68
CTCF-201ENST00000264010 C22orf24Q9Y442 160 aa10.81□□□□□ -0.68
CTCF-201ENST00000264010 RPL37AP8A6NKH3 93 aa10.8□□□□□ -0.68
CTCF-201ENST00000264010 LINC00588Q9Y4M8 146 aa10.8□□□□□ -0.68
CTCF-201ENST00000264010 LINC00167Q96N53 147 aa10.8□□□□□ -0.68
CTCF-201ENST00000264010 Q6ZQT0 140 aa10.78□□□□□ -0.68
CTCF-201ENST00000264010 CXCL6P80162 114 aa10.78□□□□□ -0.68
CTCF-201ENST00000264010 STAB1Q9NY15 2570 aa10.78□□□□□ -0.68
CTCF-201ENST00000264010 M0R2N4 97 aa10.78□□□□□ -0.68
CTCF-201ENST00000264010 ELOF1P60002 83 aaKnown RBP10.78□□□□□ -0.68
CTCF-201ENST00000264010 DHRS4-AS1Q9P1J3 65 aa10.78□□□□□ -0.68
CTCF-201ENST00000264010 C14orf177Q52M58 125 aa10.77□□□□□ -0.69
CTCF-201ENST00000264010 SPAG11AQ6PDA7 123 aa10.77□□□□□ -0.69
CTCF-201ENST00000264010 Q6ZRP5 223 aa10.77□□□□□ -0.69
CTCF-201ENST00000264010 FAM229BQ4G0N7 80 aa10.76□□□□□ -0.69
CTCF-201ENST00000264010 C1orf64Q8NEQ6 169 aa10.76□□□□□ -0.69
CTCF-201ENST00000264010 OBSCN-AS1Q96MR7 158 aa10.76□□□□□ -0.69
CTCF-201ENST00000264010 IGKV2-24A0A0C4DH68 120 aa10.76□□□□□ -0.69
CTCF-201ENST00000264010 K7EIL1 84 aa10.76□□□□□ -0.69
CTCF-201ENST00000264010 B9D2Q9BPU9 175 aa10.75□□□□□ -0.69
CTCF-201ENST00000264010 Q8NDZ9 215 aa10.75□□□□□ -0.69
CTCF-201ENST00000264010 TRAV22A0A0B4J277 110 aa10.74□□□□□ -0.69
CTCF-201ENST00000264010 C7orf33Q8WU49 177 aa10.74□□□□□ -0.69
CTCF-201ENST00000264010 NOTCH1P46531 2555 aa10.73□□□□□ -0.69
CTCF-201ENST00000264010 C1orf137Q5JT78 98 aa10.73□□□□□ -0.69
CTCF-201ENST00000264010 ANK3Q12955 4377 aaKnown RBP10.72□□□□□ -0.69
CTCF-201ENST00000264010 COL6A5A8TX70 2615 aa10.72□□□□□ -0.69
CTCF-201ENST00000264010 LOC110117498A0A087WWA1 95 aa10.72□□□□□ -0.69
CTCF-201ENST00000264010 C4orf48Q5BLP8 95 aa10.71□□□□□ -0.69
CTCF-201ENST00000264010 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.69□□□□□ -0.7
CTCF-201ENST00000264010 CASC2Q6XLA1 102 aa10.68□□□□□ -0.7
CTCF-201ENST00000264010 OTOGQ6ZRI0 2925 aa10.68□□□□□ -0.7
CTCF-201ENST00000264010 H0Y9P7 68 aa10.67□□□□□ -0.7
CTCF-201ENST00000264010 KRTAP26-1Q6PEX3 210 aa10.67□□□□□ -0.7
CTCF-201ENST00000264010 VWFP04275 2813 aa10.67□□□□□ -0.7
CTCF-201ENST00000264010 LINC00528Q8N1L1 170 aa10.66□□□□□ -0.7
CTCF-201ENST00000264010 RBM12B-AS1Q9P1G2 102 aa10.66□□□□□ -0.7
CTCF-201ENST00000264010 LIMD2Q9BT23 127 aa10.66□□□□□ -0.7
CTCF-201ENST00000264010 TENM1Q9UKZ4 2725 aa10.66□□□□□ -0.7
CTCF-201ENST00000264010 MGAM2Q2M2H8 2515 aa10.66□□□□□ -0.7
CTCF-201ENST00000264010 KCNQ1DNQ9H478 68 aa10.65□□□□□ -0.71
CTCF-201ENST00000264010 A0A087WSZ3 146 aa10.64□□□□□ -0.71
CTCF-201ENST00000264010 BCE1O60756 84 aa10.64□□□□□ -0.71
CTCF-201ENST00000264010 H3BS24 57 aa10.64□□□□□ -0.71
CTCF-201ENST00000264010 TLX1NBP0CAT3 122 aa10.64□□□□□ -0.71
CTCF-201ENST00000264010 REG3GQ6UW15 175 aa10.63□□□□□ -0.71
CTCF-201ENST00000264010 KTN1-AS1Q86SY8 53 aa10.63□□□□□ -0.71
CTCF-201ENST00000264010 NUPR2A6NF83 97 aa10.6□□□□□ -0.71
CTCF-201ENST00000264010 CASC10Q5T4H9 136 aa10.6□□□□□ -0.71
CTCF-201ENST00000264010 PLA2G2DQ9UNK4 145 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms