RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 ERC2-IT1O76042 136 aa13.33□□□□□ -0.28
LSM4-201ENST00000252816 TRAV23DV6A0A075B6W5 121 aa13.32□□□□□ -0.28
LSM4-201ENST00000252816 Q9BRP9 147 aa13.32□□□□□ -0.28
LSM4-201ENST00000252816 SPANXCQ9NY87 97 aa13.32□□□□□ -0.28
LSM4-201ENST00000252816 Q6ZRX8 168 aa13.31□□□□□ -0.28
LSM4-201ENST00000252816 HIST3H2BBQ8N257 126 aa13.31□□□□□ -0.28
LSM4-201ENST00000252816 PPDPFQ9H3Y8 114 aa13.31□□□□□ -0.28
LSM4-201ENST00000252816 ZNF73O43830 326 aaPredicted RBP13.28□□□□□ -0.28
LSM4-201ENST00000252816 LINC00483Q53H64 154 aa13.28□□□□□ -0.28
LSM4-201ENST00000252816 HIST1H2BLQ99880 126 aa13.28□□□□□ -0.28
LSM4-201ENST00000252816 GAGE2AQ6NT46 116 aa13.26□□□□□ -0.29
LSM4-201ENST00000252816 SCGB1D4Q6XE38 83 aa13.26□□□□□ -0.29
LSM4-201ENST00000252816 PCP2Q8IVA1 136 aa13.26□□□□□ -0.29
LSM4-201ENST00000252816 SPANXDQ9BXN6 97 aa13.25□□□□□ -0.29
LSM4-201ENST00000252816 RNF213Q63HN8 5207 aa13.25□□□□□ -0.29
LSM4-201ENST00000252816 S100A2P29034 98 aa13.24□□□□□ -0.29
LSM4-201ENST00000252816 AKR1D1P51857 326 aa13.24□□□□□ -0.29
LSM4-201ENST00000252816 OR13C6PQ8NH95 151 aa13.24□□□□□ -0.29
LSM4-201ENST00000252816 RETNLBQ9BQ08 111 aa13.24□□□□□ -0.29
LSM4-201ENST00000252816 JOSD1Q15040 202 aaPredicted RBP13.21□□□□□ -0.29
LSM4-201ENST00000252816 CBY1Q9Y3M2 126 aa13.21□□□□□ -0.29
LSM4-201ENST00000252816 CTAG1AP78358 180 aa13.2□□□□□ -0.3
LSM4-201ENST00000252816 Q8NBF4 154 aa13.2□□□□□ -0.3
LSM4-201ENST00000252816 S100A6P06703 90 aa13.19□□□□□ -0.3
LSM4-201ENST00000252816 LINC00518Q8N0U6 118 aa13.19□□□□□ -0.3
LSM4-201ENST00000252816 SNRPEP62304 92 aaKnown RBP13.18□□□□□ -0.3
LSM4-201ENST00000252816 SPAG11AQ6PDA7 123 aa13.18□□□□□ -0.3
LSM4-201ENST00000252816 IFITM1P13164 125 aa13.16□□□□□ -0.3
LSM4-201ENST00000252816 HINT1P49773 126 aaPredicted RBP13.16□□□□□ -0.3
LSM4-201ENST00000252816 ST20-AS1Q8NBB2 130 aa13.16□□□□□ -0.3
LSM4-201ENST00000252816 IGLV9-49A0A0B4J1Y8 123 aa13.15□□□□□ -0.3
LSM4-201ENST00000252816 Q6ZVH6 145 aa13.15□□□□□ -0.3
LSM4-201ENST00000252816 MUSTN1Q8IVN3 82 aa13.15□□□□□ -0.3
LSM4-201ENST00000252816 MOBPQ13875 183 aa13.14□□□□□ -0.31
LSM4-201ENST00000252816 COPS9Q8WXC6 57 aa13.14□□□□□ -0.31
LSM4-201ENST00000252816 C4orf48Q5BLP8 95 aa13.13□□□□□ -0.31
LSM4-201ENST00000252816 C6orf99Q4VX62 202 aa13.12□□□□□ -0.31
LSM4-201ENST00000252816 ELOF1P60002 83 aaKnown RBP13.1□□□□□ -0.31
LSM4-201ENST00000252816 C5orf52A6NGY3 159 aa13.09□□□□□ -0.31
LSM4-201ENST00000252816 HSBP1L1C9JCN9 74 aa13.09□□□□□ -0.31
LSM4-201ENST00000252816 COX7BP24311 80 aa13.09□□□□□ -0.31
LSM4-201ENST00000252816 SSBP3-AS1Q7Z2R9 100 aa13.09□□□□□ -0.31
LSM4-201ENST00000252816 DHRS4-AS1Q9P1J3 65 aa13.09□□□□□ -0.31
LSM4-201ENST00000252816 IGLV7-46A0A075B6I9 117 aa13.08□□□□□ -0.32
LSM4-201ENST00000252816 A6NDN8 102 aa13.07□□□□□ -0.32
LSM4-201ENST00000252816 SPINK1P00995 79 aa13.07□□□□□ -0.32
LSM4-201ENST00000252816 SCGB1D1O95968 90 aa13.04□□□□□ -0.32
LSM4-201ENST00000252816 SPRR1BP22528 89 aa13.04□□□□□ -0.32
LSM4-201ENST00000252816 TRBV7-6A0A0J9YX20 115 aa13.03□□□□□ -0.32
LSM4-201ENST00000252816 TPRXLQ17RH7 258 aa13.03□□□□□ -0.32
LSM4-201ENST00000252816 C9orf153Q5TBE3 101 aa13.03□□□□□ -0.32
LSM4-201ENST00000252816 TRAV13-2A0A0B4J235 113 aa13□□□□□ -0.33
LSM4-201ENST00000252816 A0A1B0GWB2 263 aa12.99□□□□□ -0.33
LSM4-201ENST00000252816 FP248Q71RG6 208 aaPredicted RBP12.98□□□□□ -0.33
LSM4-201ENST00000252816 SMIM11BQ8TCY0 68 aa12.98□□□□□ -0.33
LSM4-201ENST00000252816 RPS29P62273 56 aaKnown RBP12.97□□□□□ -0.33
LSM4-201ENST00000252816 A4D1N5 150 aa12.96□□□□□ -0.33
LSM4-201ENST00000252816 Q8N377 158 aa12.96□□□□□ -0.33
LSM4-201ENST00000252816 CDIP1Q9H305 208 aa12.96□□□□□ -0.33
LSM4-201ENST00000252816 SLC25A34Q6PIV7 304 aa12.95□□□□□ -0.34
LSM4-201ENST00000252816 DEFB105AQ8NG35 78 aa12.95□□□□□ -0.34
LSM4-201ENST00000252816 COX8AP10176 69 aa12.94□□□□□ -0.34
LSM4-201ENST00000252816 TAL2Q16559 108 aa12.94□□□□□ -0.34
LSM4-201ENST00000252816 LAMTOR3Q9UHA4 124 aa12.94□□□□□ -0.34
LSM4-201ENST00000252816 MUC2Q02817 5179 aa12.93□□□□□ -0.34
LSM4-201ENST00000252816 TEX49A0A1B0GTD5 131 aa12.91□□□□□ -0.34
LSM4-201ENST00000252816 LINC01547P58512 204 aaPredicted RBP12.91□□□□□ -0.34
LSM4-201ENST00000252816 Q1RN00 199 aa12.91□□□□□ -0.34
LSM4-201ENST00000252816 IGLV5-48A0A075B6I7 105 aa12.89□□□□□ -0.35
LSM4-201ENST00000252816 SLC25A20O43772 301 aa12.89□□□□□ -0.35
LSM4-201ENST00000252816 SMIM29Q86T20 159 aa12.89□□□□□ -0.35
LSM4-201ENST00000252816 DLEU1O43261 78 aa12.88□□□□□ -0.35
LSM4-201ENST00000252816 KRTAP13-3Q3SY46 172 aa12.88□□□□□ -0.35
LSM4-201ENST00000252816 HIST1H4GQ99525 98 aa12.88□□□□□ -0.35
LSM4-201ENST00000252816 MUC17Q685J3 4493 aa12.88□□□□□ -0.35
LSM4-201ENST00000252816 C14orf144Q96I85 54 aa12.86□□□□□ -0.35
LSM4-201ENST00000252816 C12orf57Q99622 126 aa12.86□□□□□ -0.35
LSM4-201ENST00000252816 PAM16Q9Y3D7 125 aa12.86□□□□□ -0.35
LSM4-201ENST00000252816 HRCT1Q6UXD1 115 aa12.85□□□□□ -0.35
LSM4-201ENST00000252816 SPATA45Q537H7 98 aa12.84□□□□□ -0.35
LSM4-201ENST00000252816 NHP2Q9NX24 153 aaKnown RBP12.84□□□□□ -0.35
LSM4-201ENST00000252816 VAMP3Q15836 100 aa12.82□□□□□ -0.36
LSM4-201ENST00000252816 LINC00575Q6W349 94 aa12.82□□□□□ -0.36
LSM4-201ENST00000252816 VAMP8Q9BV40 100 aa12.8□□□□□ -0.36
LSM4-201ENST00000252816 PRO1933Q9H354 126 aa12.8□□□□□ -0.36
LSM4-201ENST00000252816 HIGD1BQ9P298 99 aa12.78□□□□□ -0.36
LSM4-201ENST00000252816 A0A0G2JQZ4 141 aa12.77□□□□□ -0.37
LSM4-201ENST00000252816 CD164Q04900 197 aa12.77□□□□□ -0.37
LSM4-201ENST00000252816 C2orf91Q6ZV80 131 aa12.77□□□□□ -0.37
LSM4-201ENST00000252816 LIMD2Q9BT23 127 aa12.77□□□□□ -0.37
LSM4-201ENST00000252816 hADV29S1A0JD25 119 aa12.75□□□□□ -0.37
LSM4-201ENST00000252816 CFC1BP0CG36 223 aa12.75□□□□□ -0.37
LSM4-201ENST00000252816 CFC1P0CG37 223 aa12.75□□□□□ -0.37
LSM4-201ENST00000252816 Q6ZQY7 126 aa12.74□□□□□ -0.37
LSM4-201ENST00000252816 H7C2G1 150 aa12.73□□□□□ -0.37
LSM4-201ENST00000252816 BVES-AS1Q5T3Y7 98 aa12.7□□□□□ -0.38
LSM4-201ENST00000252816 PYY3Q5JQD4 70 aa12.69□□□□□ -0.38
LSM4-201ENST00000252816 RAB37Q96AX2 223 aa12.68□□□□□ -0.38
LSM4-201ENST00000252816 A0A0B4J2C4 111 aa12.67□□□□□ -0.38
LSM4-201ENST00000252816 ASB16-AS1Q495Z4 193 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms