RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 Q8N814 137 aa5.68□□□□□ -1.5
VPS4B-201ENST00000238497 hADV29S1A0JD25 119 aa5.67□□□□□ -1.5
VPS4B-201ENST00000238497 SDIM1Q6ZPB5 146 aa5.67□□□□□ -1.5
VPS4B-201ENST00000238497 Q6ZRP5 223 aa5.67□□□□□ -1.5
VPS4B-201ENST00000238497 C15orf56Q8N910 161 aa5.67□□□□□ -1.5
VPS4B-201ENST00000238497 TRAV23DV6A0A075B6W5 121 aa5.67□□□□□ -1.5
VPS4B-201ENST00000238497 DNAH10OSP0CZ25 163 aa5.67□□□□□ -1.5
VPS4B-201ENST00000238497 FAT2Q9NYQ8 4349 aa5.67□□□□□ -1.5
VPS4B-201ENST00000238497 LOC107984640A0A0U1RRK4 108 aa5.66□□□□□ -1.5
VPS4B-201ENST00000238497 DIRC1Q969H9 104 aa5.66□□□□□ -1.5
VPS4B-201ENST00000238497 DNAH11Q96DT5 4516 aa5.66□□□□□ -1.5
VPS4B-201ENST00000238497 FAM168BA1KXE4 195 aa5.66□□□□□ -1.5
VPS4B-201ENST00000238497 LINC01556Q5JQF7 62 aa5.66□□□□□ -1.5
VPS4B-201ENST00000238497 DNAH17Q9UFH2 4485 aa5.66□□□□□ -1.5
VPS4B-201ENST00000238497 HECTD4Q9Y4D8 3996 aa5.66□□□□□ -1.5
VPS4B-201ENST00000238497 ZNF73O43830 326 aaPredicted RBP5.65□□□□□ -1.51
VPS4B-201ENST00000238497 KRTAP10-2P60368 255 aa5.65□□□□□ -1.51
VPS4B-201ENST00000238497 DYNC1H1Q14204 4646 aaKnown RBP5.64□□□□□ -1.51
VPS4B-201ENST00000238497 NDUFC2-KCTD14E9PQ53 114 aa5.64□□□□□ -1.51
VPS4B-201ENST00000238497 FAM236AA0A1B0GUQ0 79 aa5.64□□□□□ -1.51
VPS4B-201ENST00000238497 FAM236BA0A1B0GV22 79 aa5.64□□□□□ -1.51
VPS4B-201ENST00000238497 COX7BP24311 80 aa5.64□□□□□ -1.51
VPS4B-201ENST00000238497 HAMPP81172 84 aa5.64□□□□□ -1.51
VPS4B-201ENST00000238497 LINC01561Q8N1V8 128 aa5.64□□□□□ -1.51
VPS4B-201ENST00000238497 SMCR5Q8TEV8 140 aa5.64□□□□□ -1.51
VPS4B-201ENST00000238497 NDUFC2O95298 119 aa5.64□□□□□ -1.51
VPS4B-201ENST00000238497 TMEM256-PLSCR3K7ERE1 68 aa5.63□□□□□ -1.51
VPS4B-201ENST00000238497 LINC00846Q9NV44 126 aa5.63□□□□□ -1.51
VPS4B-201ENST00000238497 C22orf24Q9Y442 160 aa5.63□□□□□ -1.51
VPS4B-201ENST00000238497 HERC2O95714 4834 aa5.63□□□□□ -1.51
VPS4B-201ENST00000238497 A0A087WVE0 104 aa5.63□□□□□ -1.51
VPS4B-201ENST00000238497 SERTAD4-AS1Q5TG53 156 aa5.63□□□□□ -1.51
VPS4B-201ENST00000238497 LINC00575Q6W349 94 aa5.63□□□□□ -1.51
VPS4B-201ENST00000238497 SCXQ7RTU7 201 aa5.62□□□□□ -1.51
VPS4B-201ENST00000238497 RBM3P98179 157 aaKnown RBP5.62□□□□□ -1.51
VPS4B-201ENST00000238497 A0A087WTM6 91 aa5.61□□□□□ -1.51
VPS4B-201ENST00000238497 C3orf22Q8N5N4 141 aa5.61□□□□□ -1.51
VPS4B-201ENST00000238497 DSCR8Q96T75 97 aa5.61□□□□□ -1.51
VPS4B-201ENST00000238497 M0R378 163 aa5.61□□□□□ -1.51
VPS4B-201ENST00000238497 NDUFV3P56181 108 aaKnown RBP5.61□□□□□ -1.51
VPS4B-201ENST00000238497 UBE2BP63146 152 aa5.61□□□□□ -1.51
VPS4B-201ENST00000238497 LRP1BQ9NZR2 4599 aa5.61□□□□□ -1.51
VPS4B-201ENST00000238497 VPREB1P12018 145 aa5.61□□□□□ -1.51
VPS4B-201ENST00000238497 Q6ZRN7 208 aaPredicted RBP5.61□□□□□ -1.51
VPS4B-201ENST00000238497 KRTAP26-1Q6PEX3 210 aa5.6□□□□□ -1.51
VPS4B-201ENST00000238497 DNAH5Q8TE73 4624 aa5.6□□□□□ -1.51
VPS4B-201ENST00000238497 RMI2Q96E14 147 aa5.6□□□□□ -1.51
VPS4B-201ENST00000238497 IGLV5-52A0A0A0MRZ9 124 aa5.59□□□□□ -1.51
VPS4B-201ENST00000238497 ETDCA0A1B0GVM5 59 aa5.59□□□□□ -1.51
VPS4B-201ENST00000238497 PKD1P98161 4303 aa5.59□□□□□ -1.51
VPS4B-201ENST00000238497 FLG2Q5D862 2391 aaPredicted RBP5.59□□□□□ -1.51
VPS4B-201ENST00000238497 C7orf33Q8WU49 177 aa5.59□□□□□ -1.51
VPS4B-201ENST00000238497 IGLV6-57P01721 117 aa5.59□□□□□ -1.52
VPS4B-201ENST00000238497 ACYP1P07311 99 aa5.59□□□□□ -1.52
VPS4B-201ENST00000238497 CHTF8P0CG12 524 aa5.59□□□□□ -1.52
VPS4B-201ENST00000238497 LINC00643Q86TS7 51 aa5.59□□□□□ -1.52
VPS4B-201ENST00000238497 RYR1P21817 5038 aa5.58□□□□□ -1.52
VPS4B-201ENST00000238497 A0A096LNI7 61 aa5.58□□□□□ -1.52
VPS4B-201ENST00000238497 JMJD7-PLA2G4BH0Y9G9 81 aa5.58□□□□□ -1.52
VPS4B-201ENST00000238497 C2orf48Q96LS8 159 aa5.58□□□□□ -1.52
VPS4B-201ENST00000238497 HIGD2AQ9BW72 106 aa5.58□□□□□ -1.52
VPS4B-201ENST00000238497 UBL5Q9BZL1 73 aa5.57□□□□□ -1.52
VPS4B-201ENST00000238497 GVQW2A0A096LPI5 108 aaPredicted RBP5.56□□□□□ -1.52
VPS4B-201ENST00000238497 SMR3BP02814 79 aaPredicted RBP5.56□□□□□ -1.52
VPS4B-201ENST00000238497 LINC00167Q96N53 147 aa5.56□□□□□ -1.52
VPS4B-201ENST00000238497 SRRM2Q9UQ35 2752 aaKnown RBP5.56□□□□□ -1.52
VPS4B-201ENST00000238497 FAM240AA0A1B0GVK7 77 aa5.56□□□□□ -1.52
VPS4B-201ENST00000238497 CCKP06307 115 aa5.56□□□□□ -1.52
VPS4B-201ENST00000238497 A0A0G2JQZ4 141 aa5.55□□□□□ -1.52
VPS4B-201ENST00000238497 A0A1W2PNN7 141 aa5.55□□□□□ -1.52
VPS4B-201ENST00000238497 KRTAP10-1P60331 282 aa5.55□□□□□ -1.52
VPS4B-201ENST00000238497 FAM19A1Q7Z5A9 133 aa5.55□□□□□ -1.52
VPS4B-201ENST00000238497 ST20-AS1Q8NBB2 130 aa5.55□□□□□ -1.52
VPS4B-201ENST00000238497 PRLHP81277 87 aa5.55□□□□□ -1.52
VPS4B-201ENST00000238497 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.55□□□□□ -1.52
VPS4B-201ENST00000238497 PKIGQ9Y2B9 76 aa5.55□□□□□ -1.52
VPS4B-201ENST00000238497 CDK2AP2O75956 126 aa5.54□□□□□ -1.52
VPS4B-201ENST00000238497 KRTAP17-1Q9BYP8 105 aa5.54□□□□□ -1.52
VPS4B-201ENST00000238497 KRTAP4-5Q9BYR2 181 aa5.54□□□□□ -1.52
VPS4B-201ENST00000238497 HRCT1Q6UXD1 115 aa5.54□□□□□ -1.52
VPS4B-201ENST00000238497 A0A1B0GX51 115 aa5.53□□□□□ -1.52
VPS4B-201ENST00000238497 LRCOL1A6NCL2 159 aa5.53□□□□□ -1.52
VPS4B-201ENST00000238497 ELOF1P60002 83 aaKnown RBP5.53□□□□□ -1.52
VPS4B-201ENST00000238497 MRPL55Q7Z7F7 128 aaKnown RBP5.53□□□□□ -1.52
VPS4B-201ENST00000238497 EPM2AB3EWF7 344 aa5.52□□□□□ -1.53
VPS4B-201ENST00000238497 Q8N9L7 120 aa5.52□□□□□ -1.53
VPS4B-201ENST00000238497 DMBT1Q9UGM3 2413 aaPredicted RBP5.52□□□□□ -1.53
VPS4B-201ENST00000238497 HSPG2P98160 4391 aa5.52□□□□□ -1.53
VPS4B-201ENST00000238497 SEC61GP60059 68 aa5.52□□□□□ -1.53
VPS4B-201ENST00000238497 PCLOQ9Y6V0 5065 aa5.52□□□□□ -1.53
VPS4B-201ENST00000238497 APOBP04114 4563 aaKnown RBP5.51□□□□□ -1.53
VPS4B-201ENST00000238497 FAT1Q14517 4588 aa5.51□□□□□ -1.53
VPS4B-201ENST00000238497 ABCA13Q86UQ4 5058 aa5.51□□□□□ -1.53
VPS4B-201ENST00000238497 C4orf26Q17RF5 130 aa5.51□□□□□ -1.53
VPS4B-201ENST00000238497 C9orf153Q5TBE3 101 aa5.51□□□□□ -1.53
VPS4B-201ENST00000238497 PHF5AQ7RTV0 110 aaKnown RBP5.51□□□□□ -1.53
VPS4B-201ENST00000238497 Q8N1X5 172 aa5.51□□□□□ -1.53
VPS4B-201ENST00000238497 LINC01600Q96MT4 127 aa5.51□□□□□ -1.53
VPS4B-201ENST00000238497 ERC2-IT1O76042 136 aa5.5□□□□□ -1.53
VPS4B-201ENST00000238497 LINC00528Q8N1L1 170 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms