RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 DEFB136Q30KP8 78 aa8.56□□□□□ -1.04
MSH2-201ENST00000233146 DOPEY1Q5JWR5 2465 aa8.56□□□□□ -1.04
MSH2-201ENST00000233146 K7EQZ3 153 aa8.55□□□□□ -1.04
MSH2-201ENST00000233146 KPRPQ5T749 579 aaPredicted RBP8.55□□□□□ -1.04
MSH2-201ENST00000233146 NKAPP1Q8N9T2 125 aa8.55□□□□□ -1.04
MSH2-201ENST00000233146 C16orf74Q96GX8 76 aa8.55□□□□□ -1.04
MSH2-201ENST00000233146 DSCR9P59020 149 aa8.55□□□□□ -1.04
MSH2-201ENST00000233146 VPREB1P12018 145 aa8.54□□□□□ -1.04
MSH2-201ENST00000233146 MP68P56378 58 aa8.54□□□□□ -1.04
MSH2-201ENST00000233146 IGLV10-54A0A075B6I4 117 aa8.54□□□□□ -1.04
MSH2-201ENST00000233146 A0A1W2PNM2 257 aa8.54□□□□□ -1.04
MSH2-201ENST00000233146 C18orf65Q6ZTR6 163 aa8.54□□□□□ -1.04
MSH2-201ENST00000233146 NBPF19A0A087WUL8 3843 aa8.53□□□□□ -1.04
MSH2-201ENST00000233146 CYSRT1A8MQ03 144 aa8.53□□□□□ -1.04
MSH2-201ENST00000233146 SPAG11BQ08648 103 aa8.53□□□□□ -1.04
MSH2-201ENST00000233146 ITPR2Q14571 2701 aa8.52□□□□□ -1.05
MSH2-201ENST00000233146 XAGE1AQ9HD64 81 aa8.52□□□□□ -1.05
MSH2-201ENST00000233146 TEP1Q99973 2627 aaKnown RBP8.52□□□□□ -1.05
MSH2-201ENST00000233146 GIG44P09565 113 aaPredicted RBP8.51□□□□□ -1.05
MSH2-201ENST00000233146 GCN1Q92616 2671 aaKnown RBP8.51□□□□□ -1.05
MSH2-201ENST00000233146 GVQW2A0A096LPI5 108 aaPredicted RBP8.51□□□□□ -1.05
MSH2-201ENST00000233146 Q8N377 158 aa8.51□□□□□ -1.05
MSH2-201ENST00000233146 CSNK1G2-AS1Q8NCQ2 148 aa8.5□□□□□ -1.05
MSH2-201ENST00000233146 WFDC10AQ9H1F0 79 aa8.5□□□□□ -1.05
MSH2-201ENST00000233146 REG3AQ06141 175 aa8.49□□□□□ -1.05
MSH2-201ENST00000233146 GYPEP15421 78 aa8.49□□□□□ -1.05
MSH2-201ENST00000233146 PLAC8Q9NZF1 115 aa8.48□□□□□ -1.05
MSH2-201ENST00000233146 ANKRD17O75179 2603 aaKnown RBP8.48□□□□□ -1.05
MSH2-201ENST00000233146 SPRR4Q96PI1 79 aa8.47□□□□□ -1.05
MSH2-201ENST00000233146 LINC00313P59037 77 aa8.47□□□□□ -1.05
MSH2-201ENST00000233146 COA5Q86WW8 74 aa8.47□□□□□ -1.05
MSH2-201ENST00000233146 Q8NBF4 154 aa8.47□□□□□ -1.05
MSH2-201ENST00000233146 C6orf48Q9UBA6 75 aa8.47□□□□□ -1.05
MSH2-201ENST00000233146 H3BPC8 53 aa8.46□□□□□ -1.05
MSH2-201ENST00000233146 DEFB105AQ8NG35 78 aa8.46□□□□□ -1.05
MSH2-201ENST00000233146 LINC01558Q9Y6Z2 57 aa8.46□□□□□ -1.05
MSH2-201ENST00000233146 ANGP03950 147 aaKnown RBP8.46□□□□□ -1.06
MSH2-201ENST00000233146 DEFB112Q30KQ8 113 aa8.45□□□□□ -1.06
MSH2-201ENST00000233146 C9orf163Q8N9P6 203 aa8.45□□□□□ -1.06
MSH2-201ENST00000233146 TNP2Q05952 138 aa8.44□□□□□ -1.06
MSH2-201ENST00000233146 LINC01554Q52M75 96 aa8.44□□□□□ -1.06
MSH2-201ENST00000233146 PRR26Q8N8Z3 221 aa8.44□□□□□ -1.06
MSH2-201ENST00000233146 C1orf137Q5JT78 98 aa8.44□□□□□ -1.06
MSH2-201ENST00000233146 ZNF702PQ9H963 129 aa8.44□□□□□ -1.06
MSH2-201ENST00000233146 IGKV2D-24A0A075B6R9 120 aa8.43□□□□□ -1.06
MSH2-201ENST00000233146 DEFB116Q30KQ4 102 aa8.43□□□□□ -1.06
MSH2-201ENST00000233146 PRAC1Q96KF2 57 aa8.43□□□□□ -1.06
MSH2-201ENST00000233146 A0A096LPF7 62 aa8.42□□□□□ -1.06
MSH2-201ENST00000233146 H0Y9P7 68 aa8.42□□□□□ -1.06
MSH2-201ENST00000233146 TENM4Q6N022 2769 aa8.42□□□□□ -1.06
MSH2-201ENST00000233146 SPINK7P58062 85 aa8.42□□□□□ -1.06
MSH2-201ENST00000233146 SETXQ7Z333 2677 aaKnown RBP8.42□□□□□ -1.06
MSH2-201ENST00000233146 FSHBP01225 129 aa8.41□□□□□ -1.06
MSH2-201ENST00000233146 WFDC13Q8IUB5 93 aa8.41□□□□□ -1.06
MSH2-201ENST00000233146 MSMBP08118 114 aa8.41□□□□□ -1.06
MSH2-201ENST00000233146 C4orf3Q8WVX3 66 aa8.4□□□□□ -1.06
MSH2-201ENST00000233146 AKAP9Q99996 3911 aa8.4□□□□□ -1.07
MSH2-201ENST00000233146 DNAJC9-AS1A6NH13 148 aa8.4□□□□□ -1.07
MSH2-201ENST00000233146 DEFB130BP0DP73 79 aa8.39□□□□□ -1.07
MSH2-201ENST00000233146 DEFB130AP0DP74 79 aa8.39□□□□□ -1.07
MSH2-201ENST00000233146 CNBPP62633 177 aaKnown RBP8.39□□□□□ -1.07
MSH2-201ENST00000233146 MDFIQ99750 246 aa8.39□□□□□ -1.07
MSH2-201ENST00000233146 ITPR3Q14573 2671 aa8.39□□□□□ -1.07
MSH2-201ENST00000233146 IGLV7-46A0A075B6I9 117 aa8.39□□□□□ -1.07
MSH2-201ENST00000233146 KRTAP29-1A8MX34 341 aaPredicted RBP8.39□□□□□ -1.07
MSH2-201ENST00000233146 TEX15Q9BXT5 2789 aa8.38□□□□□ -1.07
MSH2-201ENST00000233146 NF1P21359 2839 aa8.38□□□□□ -1.07
MSH2-201ENST00000233146 CASC2Q6XLA1 102 aa8.38□□□□□ -1.07
MSH2-201ENST00000233146 SPAG11AQ6PDA7 123 aa8.37□□□□□ -1.07
MSH2-201ENST00000233146 C7orf33Q8WU49 177 aa8.37□□□□□ -1.07
MSH2-201ENST00000233146 FLNAP21333 2647 aaKnown RBP8.37□□□□□ -1.07
MSH2-201ENST00000233146 PLA2G1BP04054 148 aaKnown RBP8.36□□□□□ -1.07
MSH2-201ENST00000233146 WFDC10BQ8IUB3 73 aa8.36□□□□□ -1.07
MSH2-201ENST00000233146 PRO0255Q9UI72 69 aa8.36□□□□□ -1.07
MSH2-201ENST00000233146 APCP25054 2843 aa8.36□□□□□ -1.07
MSH2-201ENST00000233146 ADM2Q7Z4H4 148 aa8.35□□□□□ -1.07
MSH2-201ENST00000233146 HIVEP2P31629 2446 aa8.34□□□□□ -1.07
MSH2-201ENST00000233146 MAPK1IP1LQ8NDC0 245 aa8.34□□□□□ -1.07
MSH2-201ENST00000233146 FN1P02751 2386 aaKnown RBP8.34□□□□□ -1.07
MSH2-201ENST00000233146 FBN2P35556 2912 aa8.34□□□□□ -1.07
MSH2-201ENST00000233146 B4DSR2 109 aa8.34□□□□□ -1.07
MSH2-201ENST00000233146 Q8NAQ8 132 aa8.32□□□□□ -1.08
MSH2-201ENST00000233146 EGFEM1PQ0D2K5 195 aa8.32□□□□□ -1.08
MSH2-201ENST00000233146 DHRS4-AS1Q9P1J3 65 aa8.32□□□□□ -1.08
MSH2-201ENST00000233146 PRR34Q9NV39 138 aa8.31□□□□□ -1.08
MSH2-201ENST00000233146 CMC4P56277 68 aaPredicted RBP8.3□□□□□ -1.08
MSH2-201ENST00000233146 ASB16-AS1Q495Z4 193 aa8.3□□□□□ -1.08
MSH2-201ENST00000233146 UNC79Q9P2D8 2635 aa8.3□□□□□ -1.08
MSH2-201ENST00000233146 NIPBLQ6KC79 2804 aaeCLIP8.29□□□□□ -1.08
MSH2-201ENST00000233146 CAMK2N2Q96S95 79 aa8.29□□□□□ -1.08
MSH2-201ENST00000233146 C19orf73Q9NVV2 129 aa8.29□□□□□ -1.08
MSH2-201ENST00000233146 Q6ZRX8 168 aa8.28□□□□□ -1.08
MSH2-201ENST00000233146 IGLV1-50A0A075B6I6 118 aa8.28□□□□□ -1.08
MSH2-201ENST00000233146 Q6YL49 198 aa8.28□□□□□ -1.08
MSH2-201ENST00000233146 UBR5O95071 2799 aaPredicted RBP8.27□□□□□ -1.08
MSH2-201ENST00000233146 IGLV5-37A0A075B6J1 123 aa8.27□□□□□ -1.09
MSH2-201ENST00000233146 SERTAD4-AS1Q5TG53 156 aa8.26□□□□□ -1.09
MSH2-201ENST00000233146 RPL37AP61513 92 aaKnown RBP8.26□□□□□ -1.09
MSH2-201ENST00000233146 KRTAP4-16G5E9R7 235 aaPredicted RBP8.26□□□□□ -1.09
MSH2-201ENST00000233146 OTOGQ6ZRI0 2925 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms