RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 LINC00167Q96N53 147 aa4.17□□□□□ -1.74
VPS13D-201ENST00000011700 CDC42SE1Q9NRR8 79 aa4.17□□□□□ -1.74
VPS13D-201ENST00000011700 SPINK1P00995 79 aa4.17□□□□□ -1.74
VPS13D-201ENST00000011700 TYMSOSQ8TAI1 123 aa4.17□□□□□ -1.74
VPS13D-201ENST00000011700 TLX1NBP0CAT3 122 aa4.16□□□□□ -1.74
VPS13D-201ENST00000011700 PRR3P79522 188 aaKnown RBP4.16□□□□□ -1.74
VPS13D-201ENST00000011700 LCA10Q71F78 164 aa4.16□□□□□ -1.74
VPS13D-201ENST00000011700 RBM12B-AS1Q9P1G2 102 aa4.16□□□□□ -1.74
VPS13D-201ENST00000011700 TNP2Q05952 138 aa4.16□□□□□ -1.74
VPS13D-201ENST00000011700 Q1T7F1 81 aa4.16□□□□□ -1.74
VPS13D-201ENST00000011700 COA5Q86WW8 74 aa4.16□□□□□ -1.74
VPS13D-201ENST00000011700 C19orf84I3L1E1 186 aa4.15□□□□□ -1.74
VPS13D-201ENST00000011700 GAS8-AS1O95177 125 aa4.15□□□□□ -1.74
VPS13D-201ENST00000011700 CEP350Q5VT06 3117 aa4.14□□□□□ -1.75
VPS13D-201ENST00000011700 LINC00315P59091 139 aa4.14□□□□□ -1.75
VPS13D-201ENST00000011700 TM2D3Q9BRN9 247 aa4.14□□□□□ -1.75
VPS13D-201ENST00000011700 A0A1B0GVX0 72 aa4.14□□□□□ -1.75
VPS13D-201ENST00000011700 AVPP01185 164 aa4.13□□□□□ -1.75
VPS13D-201ENST00000011700 PRO3102Q9H379 93 aa4.13□□□□□ -1.75
VPS13D-201ENST00000011700 DNAH12Q6ZR08 3092 aa4.13□□□□□ -1.75
VPS13D-201ENST00000011700 NBDYA0A0U1RRE5 68 aa4.13□□□□□ -1.75
VPS13D-201ENST00000011700 LINC00483Q53H64 154 aa4.13□□□□□ -1.75
VPS13D-201ENST00000011700 C9orf163Q8N9P6 203 aa4.13□□□□□ -1.75
VPS13D-201ENST00000011700 M0R2N4 97 aa4.13□□□□□ -1.75
VPS13D-201ENST00000011700 ASB16-AS1Q495Z4 193 aa4.13□□□□□ -1.75
VPS13D-201ENST00000011700 IGSF10Q6WRI0 2623 aa4.13□□□□□ -1.75
VPS13D-201ENST00000011700 FAM104AQ969W3 186 aa4.13□□□□□ -1.75
VPS13D-201ENST00000011700 SPACA4Q8TDM5 124 aa4.12□□□□□ -1.75
VPS13D-201ENST00000011700 WISP2O76076 250 aa4.12□□□□□ -1.75
VPS13D-201ENST00000011700 C4orf26Q17RF5 130 aa4.12□□□□□ -1.75
VPS13D-201ENST00000011700 ST20-AS1Q8NBB2 130 aa4.12□□□□□ -1.75
VPS13D-201ENST00000011700 C10orf99Q6UWK7 81 aa4.12□□□□□ -1.75
VPS13D-201ENST00000011700 LINC00528Q8N1L1 170 aa4.12□□□□□ -1.75
VPS13D-201ENST00000011700 PRR34Q9NV39 138 aa4.12□□□□□ -1.75
VPS13D-201ENST00000011700 A8MTW9 85 aa4.12□□□□□ -1.75
VPS13D-201ENST00000011700 COX6B2Q6YFQ2 88 aa4.11□□□□□ -1.75
VPS13D-201ENST00000011700 H3BS24 57 aa4.11□□□□□ -1.75
VPS13D-201ENST00000011700 C15orf56Q8N910 161 aa4.11□□□□□ -1.75
VPS13D-201ENST00000011700 ZNF861PO60384 105 aa4.11□□□□□ -1.75
VPS13D-201ENST00000011700 SMCPP49901 116 aaPredicted RBP4.11□□□□□ -1.75
VPS13D-201ENST00000011700 ITPR1Q14643 2758 aa4.1□□□□□ -1.75
VPS13D-201ENST00000011700 H7BZZ5 65 aa4.1□□□□□ -1.75
VPS13D-201ENST00000011700 C18orf65Q6ZTR6 163 aa4.1□□□□□ -1.75
VPS13D-201ENST00000011700 Q6ZSN1 163 aa4.1□□□□□ -1.75
VPS13D-201ENST00000011700 A0A0C4DFX4 3053 aa4.09□□□□□ -1.75
VPS13D-201ENST00000011700 Q8NAQ8 132 aa4.09□□□□□ -1.75
VPS13D-201ENST00000011700 RTL8CO15255 209 aa4.09□□□□□ -1.75
VPS13D-201ENST00000011700 DMAC1Q96GE9 116 aa4.09□□□□□ -1.75
VPS13D-201ENST00000011700 LINC00304Q8N9R0 145 aa4.08□□□□□ -1.76
VPS13D-201ENST00000011700 CNBPP62633 177 aaKnown RBP4.08□□□□□ -1.76
VPS13D-201ENST00000011700 PCNTO95613 3336 aa4.08□□□□□ -1.76
VPS13D-201ENST00000011700 TRANK1O15050 2925 aa4.08□□□□□ -1.76
VPS13D-201ENST00000011700 K7EQZ3 153 aa4.08□□□□□ -1.76
VPS13D-201ENST00000011700 Q96NJ1 140 aa4.08□□□□□ -1.76
VPS13D-201ENST00000011700 LITAFQ99732 161 aa4.08□□□□□ -1.76
VPS13D-201ENST00000011700 IGLV1-50A0A075B6I6 118 aa4.08□□□□□ -1.76
VPS13D-201ENST00000011700 FAM218AQ96MZ4 157 aa4.07□□□□□ -1.76
VPS13D-201ENST00000011700 DEFB116Q30KQ4 102 aa4.07□□□□□ -1.76
VPS13D-201ENST00000011700 LINC01554Q52M75 96 aa4.07□□□□□ -1.76
VPS13D-201ENST00000011700 IGLV5-48A0A075B6I7 105 aa4.07□□□□□ -1.76
VPS13D-201ENST00000011700 CDSNQ15517 529 aa4.07□□□□□ -1.76
VPS13D-201ENST00000011700 C8orf17Q9NRJ1 99 aa4.07□□□□□ -1.76
VPS13D-201ENST00000011700 Q75L30 129 aa4.06□□□□□ -1.76
VPS13D-201ENST00000011700 IGLV5-37A0A075B6J1 123 aa4.06□□□□□ -1.76
VPS13D-201ENST00000011700 HRES1P13985 223 aa4.06□□□□□ -1.76
VPS13D-201ENST00000011700 OBSCN-AS1Q96MR7 158 aa4.06□□□□□ -1.76
VPS13D-201ENST00000011700 FRYLO94915 3013 aa4.05□□□□□ -1.76
VPS13D-201ENST00000011700 A0A0A0MQY5 61 aa4.05□□□□□ -1.76
VPS13D-201ENST00000011700 FAM229BQ4G0N7 80 aa4.05□□□□□ -1.76
VPS13D-201ENST00000011700 SRCAPQ6ZRS2 3230 aa4.05□□□□□ -1.76
VPS13D-201ENST00000011700 SPRR4Q96PI1 79 aa4.05□□□□□ -1.76
VPS13D-201ENST00000011700 IGFL1Q6UW32 110 aa4.04□□□□□ -1.76
VPS13D-201ENST00000011700 LINC00588Q9Y4M8 146 aa4.03□□□□□ -1.76
VPS13D-201ENST00000011700 CSNK1G2-AS1Q8NCQ2 148 aa4.03□□□□□ -1.76
VPS13D-201ENST00000011700 CHTF8P0CG12 524 aa4.03□□□□□ -1.76
VPS13D-201ENST00000011700 LINC00612Q8N6U2 182 aa4.03□□□□□ -1.77
VPS13D-201ENST00000011700 UBR5O95071 2799 aaPredicted RBP4.02□□□□□ -1.77
VPS13D-201ENST00000011700 PSORS1C2Q9UIG4 136 aa4.02□□□□□ -1.77
VPS13D-201ENST00000011700 CHD9Q3L8U1 2897 aa4.02□□□□□ -1.77
VPS13D-201ENST00000011700 IGLV7-46A0A075B6I9 117 aa4.02□□□□□ -1.77
VPS13D-201ENST00000011700 Q9UF83 564 aa4.01□□□□□ -1.77
VPS13D-201ENST00000011700 CAMK2N1Q7Z7J9 78 aa4.01□□□□□ -1.77
VPS13D-201ENST00000011700 NBEAL2Q6ZNJ1 2754 aa4□□□□□ -1.77
VPS13D-201ENST00000011700 Q8N377 158 aa4□□□□□ -1.77
VPS13D-201ENST00000011700 CFAP54Q96N23 3096 aa4□□□□□ -1.77
VPS13D-201ENST00000011700 DSPP15924 2871 aaKnown RBP4□□□□□ -1.77
VPS13D-201ENST00000011700 APLNQ9ULZ1 77 aa4□□□□□ -1.77
VPS13D-201ENST00000011700 OCR1Q9BZK8 76 aa3.99□□□□□ -1.77
VPS13D-201ENST00000011700 LAMA2P24043 3122 aaKnown RBP3.99□□□□□ -1.77
VPS13D-201ENST00000011700 PHF5AQ7RTV0 110 aaKnown RBP3.99□□□□□ -1.77
VPS13D-201ENST00000011700 IGLV8-61A0A075B6I0 122 aa3.98□□□□□ -1.77
VPS13D-201ENST00000011700 C9orf129Q5T035 196 aaKnown RBP3.98□□□□□ -1.77
VPS13D-201ENST00000011700 FLNCQ14315 2725 aa3.98□□□□□ -1.77
VPS13D-201ENST00000011700 NIPBLQ6KC79 2804 aaeCLIP3.97□□□□□ -1.77
VPS13D-201ENST00000011700 IGLV7-43P04211 117 aa3.97□□□□□ -1.77
VPS13D-201ENST00000011700 A0A1B0GU33 70 aa3.96□□□□□ -1.78
VPS13D-201ENST00000011700 KALRNO60229 2985 aa3.95□□□□□ -1.78
VPS13D-201ENST00000011700 NF1P21359 2839 aa3.95□□□□□ -1.78
VPS13D-201ENST00000011700 A0A087X002 238 aa3.94□□□□□ -1.78
VPS13D-201ENST00000011700 A0A1W2PPR1 153 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms