RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 ZNF833PQ6ZTB9 187 aa2.43□□□□□ -2.02
SCN1A-221ENST00000641996 NDUFA1O15239 70 aa2.43□□□□□ -2.02
SCN1A-221ENST00000641996 EIF4EBP1Q13541 118 aaPredicted RBP2.43□□□□□ -2.02
SCN1A-221ENST00000641996 TENM1Q9UKZ4 2725 aa2.43□□□□□ -2.02
SCN1A-221ENST00000641996 H3BQ85 93 aa2.43□□□□□ -2.02
SCN1A-221ENST00000641996 NTM-AS1Q6ZSK4 140 aa2.43□□□□□ -2.02
SCN1A-221ENST00000641996 SMIM11BQ8TCY0 68 aa2.43□□□□□ -2.02
SCN1A-221ENST00000641996 TGP01266 2768 aa2.43□□□□□ -2.02
SCN1A-221ENST00000641996 NHSL1Q5SYE7 1610 aa2.43□□□□□ -2.02
SCN1A-221ENST00000641996 IGLV2-23P01705 113 aa2.43□□□□□ -2.02
SCN1A-221ENST00000641996 C5orf56Q8N8D9 126 aa2.43□□□□□ -2.02
SCN1A-221ENST00000641996 CTSGP08311 255 aa2.42□□□□□ -2.02
SCN1A-221ENST00000641996 CCL5P13501 91 aa2.42□□□□□ -2.02
SCN1A-221ENST00000641996 Q6YL49 198 aa2.42□□□□□ -2.02
SCN1A-221ENST00000641996 C9orf47Q6ZRZ4 202 aa2.42□□□□□ -2.02
SCN1A-221ENST00000641996 Q9BRP9 147 aa2.42□□□□□ -2.02
SCN1A-221ENST00000641996 C10orf55Q5SWW7 151 aa2.42□□□□□ -2.02
SCN1A-221ENST00000641996 FLVCR1-AS1Q8TAF5 88 aa2.42□□□□□ -2.02
SCN1A-221ENST00000641996 TRBV7-4A0A0J9YYF1 115 aa2.42□□□□□ -2.02
SCN1A-221ENST00000641996 TFF2Q03403 129 aa2.42□□□□□ -2.02
SCN1A-221ENST00000641996 Q8N9P0 234 aaPredicted RBP2.42□□□□□ -2.02
SCN1A-221ENST00000641996 CDC42SE2Q9NRR3 84 aa2.42□□□□□ -2.02
SCN1A-221ENST00000641996 CD52P31358 61 aa2.42□□□□□ -2.02
SCN1A-221ENST00000641996 PATE3B3GLJ2 98 aa2.41□□□□□ -2.02
SCN1A-221ENST00000641996 KRTAP27-1Q3LI81 207 aa2.41□□□□□ -2.02
SCN1A-221ENST00000641996 CAMK2N1Q7Z7J9 78 aa2.41□□□□□ -2.02
SCN1A-221ENST00000641996 C10orf142B7Z368 130 aa2.41□□□□□ -2.02
SCN1A-221ENST00000641996 Q6ZTC4 211 aa2.41□□□□□ -2.02
SCN1A-221ENST00000641996 PRCDQ00LT1 54 aa2.41□□□□□ -2.02
SCN1A-221ENST00000641996 TNRC6CQ9HCJ0 1690 aaKnown RBP2.41□□□□□ -2.02
SCN1A-221ENST00000641996 IGKV1OR2-108A0A075B7D4 117 aa2.41□□□□□ -2.02
SCN1A-221ENST00000641996 LY6G6DO95868 133 aa2.41□□□□□ -2.02
SCN1A-221ENST00000641996 COX17Q14061 63 aa2.41□□□□□ -2.02
SCN1A-221ENST00000641996 EPM2AB3EWF7 344 aa2.41□□□□□ -2.02
SCN1A-221ENST00000641996 IGKV1-17P01599 117 aa2.41□□□□□ -2.02
SCN1A-221ENST00000641996 COX7BP24311 80 aa2.41□□□□□ -2.02
SCN1A-221ENST00000641996 LINC00242Q5T6M2 205 aa2.41□□□□□ -2.02
SCN1A-221ENST00000641996 DEFB119Q8N690 84 aa2.41□□□□□ -2.02
SCN1A-221ENST00000641996 IGLV2-11P01706 119 aa2.4□□□□□ -2.02
SCN1A-221ENST00000641996 IGLV4-69A0A075B6H9 119 aa2.4□□□□□ -2.02
SCN1A-221ENST00000641996 SMAD5-AS1Q9Y6J3 95 aa2.4□□□□□ -2.02
SCN1A-221ENST00000641996 FHL1Q13642 323 aa2.4□□□□□ -2.02
SCN1A-221ENST00000641996 DNAH12Q6ZR08 3092 aa2.4□□□□□ -2.02
SCN1A-221ENST00000641996 Q6ZR54 194 aa2.4□□□□□ -2.03
SCN1A-221ENST00000641996 CRIPTQ9P021 101 aa2.4□□□□□ -2.03
SCN1A-221ENST00000641996 ZFP36P26651 326 aaKnown RBP2.4□□□□□ -2.03
SCN1A-221ENST00000641996 CHCHD7Q9BUK0 85 aa2.4□□□□□ -2.03
SCN1A-221ENST00000641996 IGKV1D-37A0A075B6S9 117 aa2.4□□□□□ -2.03
SCN1A-221ENST00000641996 CASC10Q5T4H9 136 aa2.39□□□□□ -2.03
SCN1A-221ENST00000641996 NPBQ8NG41 125 aa2.39□□□□□ -2.03
SCN1A-221ENST00000641996 COX6B1P14854 86 aa2.39□□□□□ -2.03
SCN1A-221ENST00000641996 MGAQ8IWI9 3026 aa2.39□□□□□ -2.03
SCN1A-221ENST00000641996 CLPSL2Q6UWE3 100 aa2.39□□□□□ -2.03
SCN1A-221ENST00000641996 MUC7Q8TAX7 377 aa2.39□□□□□ -2.03
SCN1A-221ENST00000641996 VWFP04275 2813 aa2.39□□□□□ -2.03
SCN1A-221ENST00000641996 IGLV4-60A0A075B6I1 120 aa2.38□□□□□ -2.03
SCN1A-221ENST00000641996 IGHV3-53P01767 116 aa2.38□□□□□ -2.03
SCN1A-221ENST00000641996 A0A1W2PNU3 283 aaPredicted RBP2.38□□□□□ -2.03
SCN1A-221ENST00000641996 LINC01565O15544 149 aa2.38□□□□□ -2.03
SCN1A-221ENST00000641996 TTTY12Q9BZ98 90 aa2.38□□□□□ -2.03
SCN1A-221ENST00000641996 PRLHP81277 87 aa2.38□□□□□ -2.03
SCN1A-221ENST00000641996 IGLV10-54A0A075B6I4 117 aa2.38□□□□□ -2.03
SCN1A-221ENST00000641996 SRRM5B3KS81 715 aa2.38□□□□□ -2.03
SCN1A-221ENST00000641996 SPINK1P00995 79 aa2.38□□□□□ -2.03
SCN1A-221ENST00000641996 C1orf147Q96MC9 270 aaPredicted RBP2.38□□□□□ -2.03
SCN1A-221ENST00000641996 ST20-AS1Q8NBB2 130 aa2.38□□□□□ -2.03
SCN1A-221ENST00000641996 IGIPA6NJ69 53 aa2.37□□□□□ -2.03
SCN1A-221ENST00000641996 A0A1W2PNM2 257 aa2.37□□□□□ -2.03
SCN1A-221ENST00000641996 C20orf166-AS1Q96NR2 134 aa2.37□□□□□ -2.03
SCN1A-221ENST00000641996 IGLV1-40P01703 118 aa2.37□□□□□ -2.03
SCN1A-221ENST00000641996 DEFB132Q7Z7B7 95 aa2.37□□□□□ -2.03
SCN1A-221ENST00000641996 LINC00304Q8N9R0 145 aa2.37□□□□□ -2.03
SCN1A-221ENST00000641996 LINC00959A0A1B0GUT2 108 aa2.37□□□□□ -2.03
SCN1A-221ENST00000641996 TRBV6-4A0A1B0GX49 114 aa2.37□□□□□ -2.03
SCN1A-221ENST00000641996 CDKN2A-AS1Q9UH64 79 aa2.37□□□□□ -2.03
SCN1A-221ENST00000641996 CCL3L1P16619 93 aa2.37□□□□□ -2.03
SCN1A-221ENST00000641996 LINC00483Q53H64 154 aa2.37□□□□□ -2.03
SCN1A-221ENST00000641996 C6orf48Q9UBA6 75 aa2.36□□□□□ -2.03
SCN1A-221ENST00000641996 LYPD2Q6UXB3 125 aa2.36□□□□□ -2.03
SCN1A-221ENST00000641996 PATE1Q8WXA2 126 aa2.36□□□□□ -2.03
SCN1A-221ENST00000641996 TNRC18O15417 2968 aaPredicted RBP2.36□□□□□ -2.03
SCN1A-221ENST00000641996 TYMSOSQ8TAI1 123 aa2.36□□□□□ -2.03
SCN1A-221ENST00000641996 LINC01558Q9Y6Z2 57 aa2.36□□□□□ -2.03
SCN1A-221ENST00000641996 LINC00114Q6XXX2 140 aa2.36□□□□□ -2.03
SCN1A-221ENST00000641996 KRTAP25-1Q3LHN0 102 aa2.36□□□□□ -2.03
SCN1A-221ENST00000641996 ASB16-AS1Q495Z4 193 aa2.36□□□□□ -2.03
SCN1A-221ENST00000641996 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP2.36□□□□□ -2.03
SCN1A-221ENST00000641996 COL16A1Q07092 1604 aaPredicted RBP2.36□□□□□ -2.03
SCN1A-221ENST00000641996 CRIP1P50238 77 aa2.35□□□□□ -2.03
SCN1A-221ENST00000641996 C9orf129Q5T035 196 aaKnown RBP2.35□□□□□ -2.03
SCN1A-221ENST00000641996 A8MUU9 505 aa2.35□□□□□ -2.03
SCN1A-221ENST00000641996 Q8N7P7 452 aa2.35□□□□□ -2.03
SCN1A-221ENST00000641996 LOC110117498A0A087WWA1 95 aa2.35□□□□□ -2.03
SCN1A-221ENST00000641996 CCL18P55774 89 aa2.35□□□□□ -2.03
SCN1A-221ENST00000641996 FRYLO94915 3013 aa2.35□□□□□ -2.03
SCN1A-221ENST00000641996 C22orf24Q9Y442 160 aa2.35□□□□□ -2.03
SCN1A-221ENST00000641996 C7orf33Q8WU49 177 aa2.35□□□□□ -2.03
SCN1A-221ENST00000641996 KLK12Q9UKR0 248 aa2.35□□□□□ -2.03
SCN1A-221ENST00000641996 LINC00575Q6W349 94 aa2.34□□□□□ -2.03
SCN1A-221ENST00000641996 A0A1B0GVX0 72 aa2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 144.1 ms