RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 F6UZH7 168 aa-0.55□□□□□ -2.5
VPS35-212ENST00000640313 H0YGG7 62 aa-0.55□□□□□ -2.5
VPS35-212ENST00000640313 K7EP13 123 aa-0.55□□□□□ -2.5
VPS35-212ENST00000640313 CCL22O00626 93 aa-0.55□□□□□ -2.5
VPS35-212ENST00000640313 NDUFA2O43678 99 aa-0.55□□□□□ -2.5
VPS35-212ENST00000640313 GNG7O60262 68 aa-0.55□□□□□ -2.5
VPS35-212ENST00000640313 APOC2P02655 101 aa-0.55□□□□□ -2.5
VPS35-212ENST00000640313 SAA2P0DJI9 122 aaPredicted RBP-0.55□□□□□ -2.5
VPS35-212ENST00000640313 HSD52Q0P140 79 aa-0.55□□□□□ -2.5
VPS35-212ENST00000640313 Q0VG73 95 aa-0.55□□□□□ -2.5
VPS35-212ENST00000640313 C9orf153Q5TBE3 101 aa-0.55□□□□□ -2.5
VPS35-212ENST00000640313 C6orf201Q7Z4U5 140 aa-0.55□□□□□ -2.5
VPS35-212ENST00000640313 LZICQ8WZA0 190 aa-0.55□□□□□ -2.5
VPS35-212ENST00000640313 ARL11Q969Q4 196 aa-0.55□□□□□ -2.5
VPS35-212ENST00000640313 UQCR10Q9UDW1 63 aa-0.55□□□□□ -2.5
VPS35-212ENST00000640313 CDKN2A-AS1Q9UH64 79 aa-0.55□□□□□ -2.5
VPS35-212ENST00000640313 EHBP1L1Q8N3D4 1523 aa-0.55□□□□□ -2.5
VPS35-212ENST00000640313 PSME4Q14997 1843 aa-0.55□□□□□ -2.5
VPS35-212ENST00000640313 MARF1Q9Y4F3 1742 aaKnown RBP-0.55□□□□□ -2.5
VPS35-212ENST00000640313 SRCAPQ6ZRS2 3230 aa-0.56□□□□□ -2.5
VPS35-212ENST00000640313 COL6A5A8TX70 2615 aa-0.56□□□□□ -2.5
VPS35-212ENST00000640313 ADGRG4Q8IZF6 3080 aa-0.56□□□□□ -2.5
VPS35-212ENST00000640313 C7orf77A4D0Y5 90 aa-0.56□□□□□ -2.5
VPS35-212ENST00000640313 COX6CP09669 75 aa-0.56□□□□□ -2.5
VPS35-212ENST00000640313 TRAPPC2P0DI81 140 aa-0.56□□□□□ -2.5
VPS35-212ENST00000640313 TRAPPC2BP0DI82 140 aa-0.56□□□□□ -2.5
VPS35-212ENST00000640313 FGF7P21781 194 aa-0.56□□□□□ -2.5
VPS35-212ENST00000640313 GNG11P61952 73 aa-0.56□□□□□ -2.5
VPS35-212ENST00000640313 PFDN5Q99471 154 aa-0.56□□□□□ -2.5
VPS35-212ENST00000640313 MANBALQ9NQG1 85 aa-0.56□□□□□ -2.5
VPS35-212ENST00000640313 PRO1854Q9UHT4 67 aa-0.56□□□□□ -2.5
VPS35-212ENST00000640313 PAIP2BQ9ULR5 123 aaKnown RBP-0.56□□□□□ -2.5
VPS35-212ENST00000640313 A0A0G2JMZ2 1700 aa-0.56□□□□□ -2.5
VPS35-212ENST00000640313 ROBO1Q9Y6N7 1651 aa-0.56□□□□□ -2.5
VPS35-212ENST00000640313 EDC4Q6P2E9 1401 aaKnown RBP-0.56□□□□□ -2.5
VPS35-212ENST00000640313 SCAPERQ9BY12 1400 aa-0.56□□□□□ -2.5
VPS35-212ENST00000640313 SHROOM2Q13796 1616 aa-0.56□□□□□ -2.5
VPS35-212ENST00000640313 DOCK2Q92608 1830 aa-0.57□□□□□ -2.5
VPS35-212ENST00000640313 CEP152O94986 1710 aa-0.57□□□□□ -2.5
VPS35-212ENST00000640313 XRN1Q8IZH2 1706 aaKnown RBP-0.57□□□□□ -2.5
VPS35-212ENST00000640313 A0A0G2JND7 137 aa-0.57□□□□□ -2.5
VPS35-212ENST00000640313 UBE2L5PA0A1B0GUS4 154 aa-0.57□□□□□ -2.5
VPS35-212ENST00000640313 FAM25AB3EWG3 89 aa-0.57□□□□□ -2.5
VPS35-212ENST00000640313 FAM25CB3EWG5 89 aa-0.57□□□□□ -2.5
VPS35-212ENST00000640313 FAM25GB3EWG6 89 aa-0.57□□□□□ -2.5
VPS35-212ENST00000640313 H0Y9P7 68 aa-0.57□□□□□ -2.5
VPS35-212ENST00000640313 ARMS2P0C7Q2 107 aa-0.57□□□□□ -2.5
VPS35-212ENST00000640313 UBE2L3P68036 154 aaKnown RBP-0.57□□□□□ -2.5
VPS35-212ENST00000640313 DEFA5Q01523 94 aa-0.57□□□□□ -2.5
VPS35-212ENST00000640313 HEPN1Q6WQI6 88 aa-0.57□□□□□ -2.5
VPS35-212ENST00000640313 DEFB107AQ8IZN7 70 aa-0.57□□□□□ -2.5
VPS35-212ENST00000640313 PP6455Q8WZ26 134 aa-0.57□□□□□ -2.5
VPS35-212ENST00000640313 A2ML1A8K2U0 1454 aa-0.57□□□□□ -2.5
VPS35-212ENST00000640313 CCDC141Q6ZP82 1450 aa-0.57□□□□□ -2.5
VPS35-212ENST00000640313 CELSR3Q9NYQ7 3312 aa-0.57□□□□□ -2.5
VPS35-212ENST00000640313 CLIP1P30622 1438 aa-0.57□□□□□ -2.5
VPS35-212ENST00000640313 DIP2CQ9Y2E4 1556 aa-0.57□□□□□ -2.5
VPS35-212ENST00000640313 MYO9AB2RTY4 2548 aa-0.58□□□□□ -2.5
VPS35-212ENST00000640313 TLN2Q9Y4G6 2542 aa-0.58□□□□□ -2.5
VPS35-212ENST00000640313 QRICH2Q9H0J4 1663 aa-0.58□□□□□ -2.5
VPS35-212ENST00000640313 TRAV30A0A087WSZ9 112 aa-0.58□□□□□ -2.5
VPS35-212ENST00000640313 TRBV7-7A0A0K0K1E9 115 aa-0.58□□□□□ -2.5
VPS35-212ENST00000640313 H0YAA0 97 aa-0.58□□□□□ -2.5
VPS35-212ENST00000640313 H3BQF6 201 aa-0.58□□□□□ -2.5
VPS35-212ENST00000640313 NDUFA3O95167 84 aa-0.58□□□□□ -2.5
VPS35-212ENST00000640313 AKAIN1P0CW23 69 aa-0.58□□□□□ -2.5
VPS35-212ENST00000640313 ATP5EP56381 51 aaPredicted RBP-0.58□□□□□ -2.5
VPS35-212ENST00000640313 MT1XP80297 61 aa-0.58□□□□□ -2.5
VPS35-212ENST00000640313 C12orf57Q99622 126 aa-0.58□□□□□ -2.5
VPS35-212ENST00000640313 CACFD1Q9UGQ2 172 aa-0.58□□□□□ -2.5
VPS35-212ENST00000640313 IER3IP1Q9Y5U9 82 aa-0.58□□□□□ -2.5
VPS35-212ENST00000640313 S4R3F8 94 aa-0.58□□□□□ -2.5
VPS35-212ENST00000640313 CFAP46Q8IYW2 2715 aa-0.58□□□□□ -2.5
VPS35-212ENST00000640313 PHLPP1O60346 1717 aa-0.58□□□□□ -2.5
VPS35-212ENST00000640313 MAP3K1Q13233 1512 aa-0.59□□□□□ -2.5
VPS35-212ENST00000640313 SPEF2Q9C093 1822 aa-0.59□□□□□ -2.5
VPS35-212ENST00000640313 SPTY2D1-AS1A0A0U1RR47 76 aa-0.59□□□□□ -2.5
VPS35-212ENST00000640313 hADV29S1A0JD25 119 aa-0.59□□□□□ -2.5
VPS35-212ENST00000640313 NAP1L6A6NFF2 107 aa-0.59□□□□□ -2.5
VPS35-212ENST00000640313 FAM24AA6NFZ4 105 aa-0.59□□□□□ -2.5
VPS35-212ENST00000640313 TMEM262E9PQX1 116 aa-0.59□□□□□ -2.5
VPS35-212ENST00000640313 H3BQ15 152 aa-0.59□□□□□ -2.5
VPS35-212ENST00000640313 SMR3BP02814 79 aaPredicted RBP-0.59□□□□□ -2.5
VPS35-212ENST00000640313 SNCAP37840 140 aa-0.59□□□□□ -2.5
VPS35-212ENST00000640313 ASIPP42127 132 aa-0.59□□□□□ -2.5
VPS35-212ENST00000640313 COX6B2Q6YFQ2 88 aa-0.59□□□□□ -2.5
VPS35-212ENST00000640313 CGREF1Q99674 301 aa-0.59□□□□□ -2.5
VPS35-212ENST00000640313 EYSQ5T1H1 3165 aa-0.59□□□□□ -2.5
VPS35-212ENST00000640313 KTN1Q86UP2 1357 aaKnown RBP-0.59□□□□□ -2.5
VPS35-212ENST00000640313 SCN7AQ01118 1682 aa-0.59□□□□□ -2.5
VPS35-212ENST00000640313 FOCADQ5VW36 1801 aa-0.59□□□□□ -2.5
VPS35-212ENST00000640313 ITPR2Q14571 2701 aa-0.59□□□□□ -2.5
VPS35-212ENST00000640313 DMXL2Q8TDJ6 3036 aa-0.6□□□□□ -2.51
VPS35-212ENST00000640313 SAMD9Q5K651 1589 aa-0.6□□□□□ -2.51
VPS35-212ENST00000640313 ABCC5O15440 1437 aa-0.6□□□□□ -2.51
VPS35-212ENST00000640313 TRBV25-1A0A075B6N4 114 aa-0.6□□□□□ -2.51
VPS35-212ENST00000640313 H7BZZ5 65 aa-0.6□□□□□ -2.51
VPS35-212ENST00000640313 IGLC2P0DOY2 106 aa-0.6□□□□□ -2.51
VPS35-212ENST00000640313 IGLC3P0DOY3 106 aa-0.6□□□□□ -2.51
VPS35-212ENST00000640313 DEFB1P60022 68 aa-0.6□□□□□ -2.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms