RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 H3BRM9 83 aa11.15□□□□□ -0.62
CLN3-262ENST00000637699 PPDPFQ9H3Y8 114 aa11.15□□□□□ -0.62
CLN3-262ENST00000637699 IGLV5-39A0A0G2JS06 123 aa11.14□□□□□ -0.63
CLN3-262ENST00000637699 ZNF22P17026 224 aaPredicted RBP11.14□□□□□ -0.63
CLN3-262ENST00000637699 FAM19A1Q7Z5A9 133 aa11.14□□□□□ -0.63
CLN3-262ENST00000637699 ATP5LO75964 103 aa11.13□□□□□ -0.63
CLN3-262ENST00000637699 BAGE3Q86Y29 109 aa11.13□□□□□ -0.63
CLN3-262ENST00000637699 C11orf86A6NJI1 115 aa11.12□□□□□ -0.63
CLN3-262ENST00000637699 C3orf22Q8N5N4 141 aa11.12□□□□□ -0.63
CLN3-262ENST00000637699 TMEM238C9JI98 176 aa11.11□□□□□ -0.63
CLN3-262ENST00000637699 CTAG1AP78358 180 aa11.11□□□□□ -0.63
CLN3-262ENST00000637699 TMEM126AQ9H061 195 aa11.11□□□□□ -0.63
CLN3-262ENST00000637699 COLCA2A8K830 154 aa11.1□□□□□ -0.63
CLN3-262ENST00000637699 PFN2P35080 140 aa11.1□□□□□ -0.63
CLN3-262ENST00000637699 CHCHD1Q96BP2 118 aaKnown RBP11.09□□□□□ -0.63
CLN3-262ENST00000637699 PLEKHB2Q96CS7 222 aa11.09□□□□□ -0.63
CLN3-262ENST00000637699 TMA7Q9Y2S6 64 aaKnown RBP11.08□□□□□ -0.64
CLN3-262ENST00000637699 VPREB1P12018 145 aa11.07□□□□□ -0.64
CLN3-262ENST00000637699 TMEM170BQ5T4T1 132 aa11.07□□□□□ -0.64
CLN3-262ENST00000637699 CHTOPQ9Y3Y2 248 aaKnown RBP11.07□□□□□ -0.64
CLN3-262ENST00000637699 M0R378 163 aa11.06□□□□□ -0.64
CLN3-262ENST00000637699 SPAG11AQ6PDA7 123 aa11.05□□□□□ -0.64
CLN3-262ENST00000637699 IFI27L1Q96BM0 104 aa11.05□□□□□ -0.64
CLN3-262ENST00000637699 ZNF625Q96I27 306 aaPredicted RBP11.05□□□□□ -0.64
CLN3-262ENST00000637699 SND1-IT1Q9HBX3 110 aa11.05□□□□□ -0.64
CLN3-262ENST00000637699 TRAV12-1A0A0B4J245 112 aa11.04□□□□□ -0.64
CLN3-262ENST00000637699 TRGC2P03986 189 aa11.04□□□□□ -0.64
CLN3-262ENST00000637699 FAM19A2Q8N3H0 131 aa11.04□□□□□ -0.64
CLN3-262ENST00000637699 LINC00337Q8N6G1 96 aa11.04□□□□□ -0.64
CLN3-262ENST00000637699 HIGD2AQ9BW72 106 aa11.04□□□□□ -0.64
CLN3-262ENST00000637699 ERG28Q9UKR5 140 aa11.04□□□□□ -0.64
CLN3-262ENST00000637699 RPL24P83731 157 aaKnown RBP11.03□□□□□ -0.64
CLN3-262ENST00000637699 FP248Q71RG6 208 aaPredicted RBP11.02□□□□□ -0.65
CLN3-262ENST00000637699 TMEM223A0PJW6 202 aa11.01□□□□□ -0.65
CLN3-262ENST00000637699 HSBP1O75506 76 aa11.01□□□□□ -0.65
CLN3-262ENST00000637699 LINC01547P58512 204 aaPredicted RBP11.01□□□□□ -0.65
CLN3-262ENST00000637699 C4orf48Q5BLP8 95 aa11.01□□□□□ -0.65
CLN3-262ENST00000637699 Q8NDZ9 215 aa11.01□□□□□ -0.65
CLN3-262ENST00000637699 LINC00310P59036 64 aa11□□□□□ -0.65
CLN3-262ENST00000637699 COX17Q14061 63 aa11□□□□□ -0.65
CLN3-262ENST00000637699 KRTAP13-3Q3SY46 172 aa10.99□□□□□ -0.65
CLN3-262ENST00000637699 SPRR4Q96PI1 79 aa10.99□□□□□ -0.65
CLN3-262ENST00000637699 ASB16-AS1Q495Z4 193 aa10.98□□□□□ -0.65
CLN3-262ENST00000637699 SERF1AO75920 110 aa10.97□□□□□ -0.65
CLN3-262ENST00000637699 DAND5Q8N907 189 aa10.97□□□□□ -0.65
CLN3-262ENST00000637699 FSIP2Q5CZC0 6907 aa10.96□□□□□ -0.65
CLN3-262ENST00000637699 SFTA2Q6UW10 78 aa10.96□□□□□ -0.65
CLN3-262ENST00000637699 KRTAP4-1Q9BYQ7 146 aa10.96□□□□□ -0.65
CLN3-262ENST00000637699 H0Y8G0 127 aa10.95□□□□□ -0.66
CLN3-262ENST00000637699 LCE2DQ5TA82 110 aaPredicted RBP10.95□□□□□ -0.66
CLN3-262ENST00000637699 Q8NBF4 154 aa10.95□□□□□ -0.66
CLN3-262ENST00000637699 A0A0U1RRA0 63 aa10.94□□□□□ -0.66
CLN3-262ENST00000637699 LEPROTL1O95214 131 aa10.93□□□□□ -0.66
CLN3-262ENST00000637699 LINC00158P58513 81 aa10.93□□□□□ -0.66
CLN3-262ENST00000637699 ZNF706Q9Y5V0 76 aaPredicted RBP10.93□□□□□ -0.66
CLN3-262ENST00000637699 S100A6P06703 90 aa10.91□□□□□ -0.66
CLN3-262ENST00000637699 SEC61BP60468 96 aaKnown RBP10.91□□□□□ -0.66
CLN3-262ENST00000637699 SMIM13P0DJ93 91 aa10.9□□□□□ -0.66
CLN3-262ENST00000637699 FABP4P15090 132 aa10.89□□□□□ -0.67
CLN3-262ENST00000637699 CRCT1Q9UGL9 99 aa10.89□□□□□ -0.67
CLN3-262ENST00000637699 LOC105371267A0A1B0GV96 52 aa10.88□□□□□ -0.67
CLN3-262ENST00000637699 SPINK1P00995 79 aa10.88□□□□□ -0.67
CLN3-262ENST00000637699 TSPEAR-AS2P59090 65 aa10.87□□□□□ -0.67
CLN3-262ENST00000637699 SMCR5Q8TEV8 140 aa10.87□□□□□ -0.67
CLN3-262ENST00000637699 PMCHL2Q9BQD1 86 aa10.87□□□□□ -0.67
CLN3-262ENST00000637699 NDUFA12Q9UI09 145 aa10.87□□□□□ -0.67
CLN3-262ENST00000637699 HSPB8Q9UJY1 196 aa10.87□□□□□ -0.67
CLN3-262ENST00000637699 HERV-K104P63124 156 aa10.86□□□□□ -0.67
CLN3-262ENST00000637699 MEIG1Q5JSS6 88 aa10.86□□□□□ -0.67
CLN3-262ENST00000637699 HIST1H2BKO60814 126 aa10.85□□□□□ -0.67
CLN3-262ENST00000637699 HIST1H2BJP06899 126 aa10.85□□□□□ -0.67
CLN3-262ENST00000637699 HIST1H2BOP23527 126 aa10.85□□□□□ -0.67
CLN3-262ENST00000637699 HIST1H2BBP33778 126 aa10.85□□□□□ -0.67
CLN3-262ENST00000637699 HIST1H2BDP58876 126 aa10.85□□□□□ -0.67
CLN3-262ENST00000637699 HIST1H2BCP62807 126 aa10.85□□□□□ -0.67
CLN3-262ENST00000637699 HIST2H2BEQ16778 126 aa10.85□□□□□ -0.67
CLN3-262ENST00000637699 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.85□□□□□ -0.67
CLN3-262ENST00000637699 MIR7-3HGQ8N6C7 128 aa10.85□□□□□ -0.67
CLN3-262ENST00000637699 HIST1H2BHQ93079 126 aa10.85□□□□□ -0.67
CLN3-262ENST00000637699 HIST1H2BNQ99877 126 aa10.85□□□□□ -0.67
CLN3-262ENST00000637699 HIST1H2BMQ99879 126 aa10.85□□□□□ -0.67
CLN3-262ENST00000637699 LEPROTO15243 131 aa10.84□□□□□ -0.67
CLN3-262ENST00000637699 PLNP26678 52 aa10.84□□□□□ -0.67
CLN3-262ENST00000637699 MYMXA0A1B0GTQ4 84 aa10.83□□□□□ -0.68
CLN3-262ENST00000637699 C5orf52A6NGY3 159 aa10.83□□□□□ -0.68
CLN3-262ENST00000637699 PRYO14603 147 aa10.83□□□□□ -0.68
CLN3-262ENST00000637699 NCR3O14931 201 aa10.83□□□□□ -0.68
CLN3-262ENST00000637699 DPM2O94777 84 aa10.83□□□□□ -0.68
CLN3-262ENST00000637699 BOD1L2Q8IYS8 172 aa10.83□□□□□ -0.68
CLN3-262ENST00000637699 SNRPEP62304 92 aaKnown RBP10.82□□□□□ -0.68
CLN3-262ENST00000637699 ETDCA0A1B0GVM5 59 aa10.81□□□□□ -0.68
CLN3-262ENST00000637699 GAGE2AQ6NT46 116 aa10.81□□□□□ -0.68
CLN3-262ENST00000637699 LINC00587B1AMM8 73 aa10.8□□□□□ -0.68
CLN3-262ENST00000637699 IGKCP01834 107 aa10.8□□□□□ -0.68
CLN3-262ENST00000637699 SPRR1AP35321 89 aa10.8□□□□□ -0.68
CLN3-262ENST00000637699 MOBPQ13875 183 aa10.8□□□□□ -0.68
CLN3-262ENST00000637699 IGLV9-49A0A0B4J1Y8 123 aa10.79□□□□□ -0.68
CLN3-262ENST00000637699 J3QQQ9 107 aa10.79□□□□□ -0.68
CLN3-262ENST00000637699 LINC00483Q53H64 154 aa10.79□□□□□ -0.68
CLN3-262ENST00000637699 COA6Q5JTJ3 125 aaKnown RBP10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms