RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 CIRBP-AS1Q8TBR5 109 aa6.31□□□□□ -1.4
CLN3-261ENST00000637686 LITAFQ99732 161 aa6.31□□□□□ -1.4
CLN3-261ENST00000637686 C6orf48Q9UBA6 75 aa6.31□□□□□ -1.4
CLN3-261ENST00000637686 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.31□□□□□ -1.4
CLN3-261ENST00000637686 PANO1I0J062 215 aa6.3□□□□□ -1.4
CLN3-261ENST00000637686 CHTF8P0CG12 524 aa6.3□□□□□ -1.4
CLN3-261ENST00000637686 HSD52Q0P140 79 aa6.3□□□□□ -1.4
CLN3-261ENST00000637686 C10orf25Q5T742 122 aa6.3□□□□□ -1.4
CLN3-261ENST00000637686 Q5VSD8 79 aa6.3□□□□□ -1.4
CLN3-261ENST00000637686 PCLOQ9Y6V0 5065 aa6.3□□□□□ -1.4
CLN3-261ENST00000637686 NDUFC2-KCTD14E9PQ53 114 aa6.29□□□□□ -1.4
CLN3-261ENST00000637686 DPH3Q96FX2 82 aa6.29□□□□□ -1.4
CLN3-261ENST00000637686 FAM229AH3BQW9 127 aa6.28□□□□□ -1.4
CLN3-261ENST00000637686 SMIM13P0DJ93 91 aa6.28□□□□□ -1.4
CLN3-261ENST00000637686 LINC00158P58513 81 aa6.28□□□□□ -1.4
CLN3-261ENST00000637686 SRSF9Q13242 221 aaKnown RBP eCLIP6.28□□□□□ -1.4
CLN3-261ENST00000637686 IGKV2-24A0A0C4DH68 120 aa6.27□□□□□ -1.41
CLN3-261ENST00000637686 LOC107984640A0A0U1RRK4 108 aa6.27□□□□□ -1.41
CLN3-261ENST00000637686 M0R143 59 aa6.27□□□□□ -1.41
CLN3-261ENST00000637686 ADAMTSL4-AS1Q5T5F5 129 aa6.27□□□□□ -1.41
CLN3-261ENST00000637686 LINC00528Q8N1L1 170 aa6.27□□□□□ -1.41
CLN3-261ENST00000637686 HIST1H4GQ99525 98 aa6.27□□□□□ -1.41
CLN3-261ENST00000637686 A0A096LNI7 61 aa6.26□□□□□ -1.41
CLN3-261ENST00000637686 RPL24P83731 157 aaKnown RBP6.26□□□□□ -1.41
CLN3-261ENST00000637686 CEND1Q8N111 149 aa6.26□□□□□ -1.41
CLN3-261ENST00000637686 MIR7-3HGQ8N6C7 128 aa6.26□□□□□ -1.41
CLN3-261ENST00000637686 SPACA4Q8TDM5 124 aa6.26□□□□□ -1.41
CLN3-261ENST00000637686 A0A087WYN8 130 aa6.25□□□□□ -1.41
CLN3-261ENST00000637686 TMEM238LA0A1B0GVL6 79 aa6.25□□□□□ -1.41
CLN3-261ENST00000637686 A6NJY4 79 aa6.25□□□□□ -1.41
CLN3-261ENST00000637686 NDUFC2O95298 119 aa6.25□□□□□ -1.41
CLN3-261ENST00000637686 PFN2P35080 140 aa6.25□□□□□ -1.41
CLN3-261ENST00000637686 CTAG1AP78358 180 aa6.25□□□□□ -1.41
CLN3-261ENST00000637686 C9orf116Q5BN46 136 aaPredicted RBP6.25□□□□□ -1.41
CLN3-261ENST00000637686 LINC00308Q8TCZ7 52 aa6.25□□□□□ -1.41
CLN3-261ENST00000637686 LINC00474Q9P2X8 69 aa6.25□□□□□ -1.41
CLN3-261ENST00000637686 GAGE2BQ13066 116 aa6.24□□□□□ -1.41
CLN3-261ENST00000637686 SND1-IT1Q9HBX3 110 aa6.24□□□□□ -1.41
CLN3-261ENST00000637686 PLA2G2DQ9UNK4 145 aa6.24□□□□□ -1.41
CLN3-261ENST00000637686 ABCA13Q86UQ4 5058 aa6.23□□□□□ -1.41
CLN3-261ENST00000637686 PLA2G1BP04054 148 aaKnown RBP6.23□□□□□ -1.41
CLN3-261ENST00000637686 INAFM2P0DMQ5 153 aa6.23□□□□□ -1.41
CLN3-261ENST00000637686 BVES-AS1Q5T3Y7 98 aa6.23□□□□□ -1.41
CLN3-261ENST00000637686 Q6ZRP5 223 aa6.23□□□□□ -1.41
CLN3-261ENST00000637686 PLAC8Q9NZF1 115 aa6.23□□□□□ -1.41
CLN3-261ENST00000637686 VPS13BQ7Z7G8 4022 aa6.23□□□□□ -1.41
CLN3-261ENST00000637686 A0A0U1RRA0 63 aa6.22□□□□□ -1.41
CLN3-261ENST00000637686 A0A1B0GWB2 263 aa6.22□□□□□ -1.41
CLN3-261ENST00000637686 RPL18AQ02543 176 aaKnown RBP6.22□□□□□ -1.41
CLN3-261ENST00000637686 SOSTDC1Q6X4U4 206 aa6.22□□□□□ -1.41
CLN3-261ENST00000637686 MUSTN1Q8IVN3 82 aa6.22□□□□□ -1.41
CLN3-261ENST00000637686 DAND5Q8N907 189 aa6.22□□□□□ -1.41
CLN3-261ENST00000637686 A0A0B4J2C4 111 aa6.21□□□□□ -1.42
CLN3-261ENST00000637686 TRBV10-2A0A0K0K1G8 114 aa6.21□□□□□ -1.42
CLN3-261ENST00000637686 IGLV5-37A0A075B6J1 123 aa6.2□□□□□ -1.42
CLN3-261ENST00000637686 A4D1N5 150 aa6.2□□□□□ -1.42
CLN3-261ENST00000637686 A6NDN8 102 aa6.2□□□□□ -1.42
CLN3-261ENST00000637686 PCP4L1A6NKN8 68 aa6.2□□□□□ -1.42
CLN3-261ENST00000637686 FXYD2P54710 66 aa6.2□□□□□ -1.42
CLN3-261ENST00000637686 KRTAP10-4P60372 401 aaPredicted RBP6.2□□□□□ -1.42
CLN3-261ENST00000637686 RPL37AP61513 92 aaKnown RBP6.2□□□□□ -1.42
CLN3-261ENST00000637686 A0A1W2PNN7 141 aa6.19□□□□□ -1.42
CLN3-261ENST00000637686 GAGE2EQ4V326 116 aa6.19□□□□□ -1.42
CLN3-261ENST00000637686 C9orf129Q5T035 196 aaKnown RBP6.19□□□□□ -1.42
CLN3-261ENST00000637686 GAGE2DQ9UEU5 116 aa6.19□□□□□ -1.42
CLN3-261ENST00000637686 SRRM2Q9UQ35 2752 aaKnown RBP6.19□□□□□ -1.42
CLN3-261ENST00000637686 TRAV13-2A0A0B4J235 113 aa6.18□□□□□ -1.42
CLN3-261ENST00000637686 EIF4EBP3O60516 100 aaPredicted RBP6.18□□□□□ -1.42
CLN3-261ENST00000637686 VPREB1P12018 145 aa6.18□□□□□ -1.42
CLN3-261ENST00000637686 HINT1P49773 126 aaPredicted RBP6.18□□□□□ -1.42
CLN3-261ENST00000637686 LBHQ53QV2 105 aaPredicted RBP6.18□□□□□ -1.42
CLN3-261ENST00000637686 C7orf33Q8WU49 177 aa6.18□□□□□ -1.42
CLN3-261ENST00000637686 XAGE1AQ9HD64 81 aa6.18□□□□□ -1.42
CLN3-261ENST00000637686 CBY1Q9Y3M2 126 aa6.18□□□□□ -1.42
CLN3-261ENST00000637686 NPC2P61916 151 aa6.17□□□□□ -1.42
CLN3-261ENST00000637686 SNHG12Q9BXW3 62 aa6.17□□□□□ -1.42
CLN3-261ENST00000637686 IGKV2-28A0A075B6P5 120 aa6.16□□□□□ -1.42
CLN3-261ENST00000637686 IGKV2D-28P01615 120 aa6.16□□□□□ -1.42
CLN3-261ENST00000637686 CFC1BP0CG36 223 aa6.16□□□□□ -1.42
CLN3-261ENST00000637686 CFC1P0CG37 223 aa6.16□□□□□ -1.42
CLN3-261ENST00000637686 FAM168BA1KXE4 195 aa6.15□□□□□ -1.42
CLN3-261ENST00000637686 M0R378 163 aa6.15□□□□□ -1.42
CLN3-261ENST00000637686 COL5A1-AS1Q5SY13 56 aa6.15□□□□□ -1.42
CLN3-261ENST00000637686 RAB37Q96AX2 223 aa6.15□□□□□ -1.42
CLN3-261ENST00000637686 TMEM126AQ9H061 195 aa6.15□□□□□ -1.42
CLN3-261ENST00000637686 NHP2Q9NX24 153 aaKnown RBP6.15□□□□□ -1.42
CLN3-261ENST00000637686 PRO1854Q9UHT4 67 aa6.15□□□□□ -1.42
CLN3-261ENST00000637686 PHF5AQ7RTV0 110 aaKnown RBP6.14□□□□□ -1.43
CLN3-261ENST00000637686 NKAPP1Q8N9T2 125 aa6.14□□□□□ -1.43
CLN3-261ENST00000637686 IGLV6-57P01721 117 aa6.13□□□□□ -1.43
CLN3-261ENST00000637686 SERTAD4-AS1Q5TG53 156 aa6.13□□□□□ -1.43
CLN3-261ENST00000637686 FAM19A5Q7Z5A7 132 aaPredicted RBP6.13□□□□□ -1.43
CLN3-261ENST00000637686 LINC00337Q8N6G1 96 aa6.13□□□□□ -1.43
CLN3-261ENST00000637686 Q8NDZ9 215 aa6.13□□□□□ -1.43
CLN3-261ENST00000637686 FLG2Q5D862 2391 aaPredicted RBP6.13□□□□□ -1.43
CLN3-261ENST00000637686 PRR3P79522 188 aaKnown RBP6.12□□□□□ -1.43
CLN3-261ENST00000637686 BATFQ16520 125 aa6.12□□□□□ -1.43
CLN3-261ENST00000637686 MRPL55Q7Z7F7 128 aaKnown RBP6.12□□□□□ -1.43
CLN3-261ENST00000637686 KRTAP7-1Q8IUC3 87 aa6.12□□□□□ -1.43
CLN3-261ENST00000637686 C22orf24Q9Y442 160 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms