RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 AKR1D1P51857 326 aa11.85□□□□□ -0.51
CLN3-260ENST00000637578 KRTAP7-1Q8IUC3 87 aa11.85□□□□□ -0.51
CLN3-260ENST00000637578 LINC01600Q96MT4 127 aa11.85□□□□□ -0.51
CLN3-260ENST00000637578 PSORS1C2Q9UIG4 136 aa11.85□□□□□ -0.51
CLN3-260ENST00000637578 HMCN2Q8NDA2 5059 aa11.85□□□□□ -0.51
CLN3-260ENST00000637578 PFN2P35080 140 aa11.84□□□□□ -0.51
CLN3-260ENST00000637578 TNXBP22105 4242 aa11.84□□□□□ -0.51
CLN3-260ENST00000637578 MYMXA0A1B0GTQ4 84 aa11.84□□□□□ -0.51
CLN3-260ENST00000637578 C9orf129Q5T035 196 aaKnown RBP11.84□□□□□ -0.51
CLN3-260ENST00000637578 XAGE1AQ9HD64 81 aa11.84□□□□□ -0.51
CLN3-260ENST00000637578 IGKV2D-26A0A0A0MRZ7 120 aa11.83□□□□□ -0.52
CLN3-260ENST00000637578 HERV-K104P63124 156 aa11.83□□□□□ -0.52
CLN3-260ENST00000637578 NMUP48645 174 aa11.82□□□□□ -0.52
CLN3-260ENST00000637578 SCGB1D1O95968 90 aa11.81□□□□□ -0.52
CLN3-260ENST00000637578 COX17Q14061 63 aa11.81□□□□□ -0.52
CLN3-260ENST00000637578 ANKRD39Q53RE8 183 aa11.81□□□□□ -0.52
CLN3-260ENST00000637578 KRTAP11-1Q8IUC1 163 aa11.8□□□□□ -0.52
CLN3-260ENST00000637578 A0A0U1RRA0 63 aa11.79□□□□□ -0.52
CLN3-260ENST00000637578 MEIG1Q5JSS6 88 aa11.79□□□□□ -0.52
CLN3-260ENST00000637578 FAM19A5Q7Z5A7 132 aaPredicted RBP11.79□□□□□ -0.52
CLN3-260ENST00000637578 SMIM13P0DJ93 91 aa11.79□□□□□ -0.52
CLN3-260ENST00000637578 LINC00158P58513 81 aa11.79□□□□□ -0.52
CLN3-260ENST00000637578 REG3GQ6UW15 175 aa11.79□□□□□ -0.52
CLN3-260ENST00000637578 TTTY13Q9BZ97 58 aa11.79□□□□□ -0.52
CLN3-260ENST00000637578 C1orf137Q5JT78 98 aa11.77□□□□□ -0.53
CLN3-260ENST00000637578 SND1-IT1Q9HBX3 110 aa11.77□□□□□ -0.53
CLN3-260ENST00000637578 KRTAP10-8P60410 259 aa11.76□□□□□ -0.53
CLN3-260ENST00000637578 LINC00587B1AMM8 73 aa11.75□□□□□ -0.53
CLN3-260ENST00000637578 M0QXV9 152 aa11.75□□□□□ -0.53
CLN3-260ENST00000637578 A0A0J9YXY3 114 aa11.75□□□□□ -0.53
CLN3-260ENST00000637578 ZNF815PA8K554 130 aa11.75□□□□□ -0.53
CLN3-260ENST00000637578 IGLV7-43P04211 117 aa11.75□□□□□ -0.53
CLN3-260ENST00000637578 HSBP1L1C9JCN9 74 aa11.74□□□□□ -0.53
CLN3-260ENST00000637578 MIR7-3HGQ8N6C7 128 aa11.74□□□□□ -0.53
CLN3-260ENST00000637578 PLA2G2DQ9UNK4 145 aa11.74□□□□□ -0.53
CLN3-260ENST00000637578 JOSD1Q15040 202 aaPredicted RBP11.73□□□□□ -0.53
CLN3-260ENST00000637578 PCP2Q8IVA1 136 aa11.72□□□□□ -0.53
CLN3-260ENST00000637578 DAND5Q8N907 189 aa11.71□□□□□ -0.53
CLN3-260ENST00000637578 C22orf24Q9Y442 160 aa11.7□□□□□ -0.54
CLN3-260ENST00000637578 UBE2BP63146 152 aa11.69□□□□□ -0.54
CLN3-260ENST00000637578 PYY3Q5JQD4 70 aa11.68□□□□□ -0.54
CLN3-260ENST00000637578 ADAMTSL4-AS1Q5T5F5 129 aa11.68□□□□□ -0.54
CLN3-260ENST00000637578 Q8NDZ9 215 aa11.68□□□□□ -0.54
CLN3-260ENST00000637578 DIRC1Q969H9 104 aa11.68□□□□□ -0.54
CLN3-260ENST00000637578 TP73-AS1Q9UF72 201 aa11.68□□□□□ -0.54
CLN3-260ENST00000637578 LITAFQ99732 161 aa11.67□□□□□ -0.54
CLN3-260ENST00000637578 TIMM17BO60830 172 aa11.67□□□□□ -0.54
CLN3-260ENST00000637578 VPREB1P12018 145 aa11.67□□□□□ -0.54
CLN3-260ENST00000637578 SCGB1D4Q6XE38 83 aa11.67□□□□□ -0.54
CLN3-260ENST00000637578 IGLV5-37A0A075B6J1 123 aa11.66□□□□□ -0.54
CLN3-260ENST00000637578 H0Y9J4 135 aa11.65□□□□□ -0.54
CLN3-260ENST00000637578 LBHQ53QV2 105 aaPredicted RBP11.65□□□□□ -0.54
CLN3-260ENST00000637578 BOD1L2Q8IYS8 172 aa11.65□□□□□ -0.54
CLN3-260ENST00000637578 NKAPP1Q8N9T2 125 aa11.65□□□□□ -0.54
CLN3-260ENST00000637578 MRPL55Q7Z7F7 128 aaKnown RBP11.64□□□□□ -0.55
CLN3-260ENST00000637578 PAM16Q9Y3D7 125 aa11.64□□□□□ -0.55
CLN3-260ENST00000637578 RPL24P83731 157 aaKnown RBP11.63□□□□□ -0.55
CLN3-260ENST00000637578 VAMP8Q9BV40 100 aa11.63□□□□□ -0.55
CLN3-260ENST00000637578 NPC2P61916 151 aa11.62□□□□□ -0.55
CLN3-260ENST00000637578 LOC107984156A0A0G2JMH3 177 aa11.62□□□□□ -0.55
CLN3-260ENST00000637578 GAGE10A6NGK3 116 aa11.62□□□□□ -0.55
CLN3-260ENST00000637578 EIF4EBP3O60516 100 aaPredicted RBP11.62□□□□□ -0.55
CLN3-260ENST00000637578 SPATA45Q537H7 98 aa11.62□□□□□ -0.55
CLN3-260ENST00000637578 SOSTDC1Q6X4U4 206 aa11.62□□□□□ -0.55
CLN3-260ENST00000637578 ARL17AQ8IVW1 177 aa11.62□□□□□ -0.55
CLN3-260ENST00000637578 LINC00167Q96N53 147 aa11.61□□□□□ -0.55
CLN3-260ENST00000637578 MIEN1Q9BRT3 115 aa11.61□□□□□ -0.55
CLN3-260ENST00000637578 KRTAP1-4P0C5Y4 121 aa11.6□□□□□ -0.55
CLN3-260ENST00000637578 TMEM238C9JI98 176 aa11.59□□□□□ -0.55
CLN3-260ENST00000637578 COX8AP10176 69 aa11.59□□□□□ -0.55
CLN3-260ENST00000637578 LINC00308Q8TCZ7 52 aa11.59□□□□□ -0.55
CLN3-260ENST00000637578 RPL37AP8A6NKH3 93 aa11.58□□□□□ -0.55
CLN3-260ENST00000637578 ZNF861PO60384 105 aa11.58□□□□□ -0.55
CLN3-260ENST00000637578 C14orf144Q96I85 54 aa11.58□□□□□ -0.56
CLN3-260ENST00000637578 SPANXDQ9BXN6 97 aa11.58□□□□□ -0.56
CLN3-260ENST00000637578 SPANXCQ9NY87 97 aa11.58□□□□□ -0.56
CLN3-260ENST00000637578 UBR4Q5T4S7 5183 aa11.57□□□□□ -0.56
CLN3-260ENST00000637578 NCR3O14931 201 aa11.57□□□□□ -0.56
CLN3-260ENST00000637578 PRR26Q8N8Z3 221 aa11.57□□□□□ -0.56
CLN3-260ENST00000637578 M0R378 163 aa11.56□□□□□ -0.56
CLN3-260ENST00000637578 IGLV1-50A0A075B6I6 118 aa11.54□□□□□ -0.56
CLN3-260ENST00000637578 IGKV2-28A0A075B6P5 120 aa11.54□□□□□ -0.56
CLN3-260ENST00000637578 DLEU1O43261 78 aa11.54□□□□□ -0.56
CLN3-260ENST00000637578 IGKV2D-28P01615 120 aa11.54□□□□□ -0.56
CLN3-260ENST00000637578 BCE1O60756 84 aa11.54□□□□□ -0.56
CLN3-260ENST00000637578 NDUFC2O95298 119 aa11.54□□□□□ -0.56
CLN3-260ENST00000637578 Q6ZVH6 145 aa11.53□□□□□ -0.56
CLN3-260ENST00000637578 SPANXB1Q9NS25 103 aaPredicted RBP11.53□□□□□ -0.56
CLN3-260ENST00000637578 IFITM1P13164 125 aa11.51□□□□□ -0.57
CLN3-260ENST00000637578 SLC25A34Q6PIV7 304 aa11.51□□□□□ -0.57
CLN3-260ENST00000637578 TRBV10-2A0A0K0K1G8 114 aa11.5□□□□□ -0.57
CLN3-260ENST00000637578 RPL28P46779 137 aaKnown RBP11.5□□□□□ -0.57
CLN3-260ENST00000637578 MUSTN1Q8IVN3 82 aa11.5□□□□□ -0.57
CLN3-260ENST00000637578 TRBV10-3A0A0K0K1G6 114 aa11.49□□□□□ -0.57
CLN3-260ENST00000637578 LOC105371267A0A1B0GV96 52 aa11.49□□□□□ -0.57
CLN3-260ENST00000637578 COPS9Q8WXC6 57 aa11.49□□□□□ -0.57
CLN3-260ENST00000637578 S100A12P80511 92 aa11.48□□□□□ -0.57
CLN3-260ENST00000637578 KRTAP13-1Q8IUC0 172 aa11.48□□□□□ -0.57
CLN3-260ENST00000637578 PPDPFQ9H3Y8 114 aa11.48□□□□□ -0.57
CLN3-260ENST00000637578 LRP2P98164 4655 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms